Publications

Displaying 501 - 600 of 732
  • Räsänen, O., Seshadri, S., Karadayi, J., Riebling, E., Bunce, J., Cristia, A., Metze, F., Casillas, M., Rosemberg, C., Bergelson, E., & Soderstrom, M. (2019). Automatic word count estimation from daylong child-centered recordings in various language environments using language-independent syllabification of speech. Speech Communication, 113, 63-80. doi:10.1016/j.specom.2019.08.005.

    Abstract

    Automatic word count estimation (WCE) from audio recordings can be used to quantify the amount of verbal communication in a recording environment. One key application of WCE is to measure language input heard by infants and toddlers in their natural environments, as captured by daylong recordings from microphones worn by the infants. Although WCE is nearly trivial for high-quality signals in high-resource languages, daylong recordings are substantially more challenging due to the unconstrained acoustic environments and the presence of near- and far-field speech. Moreover, many use cases of interest involve languages for which reliable ASR systems or even well-defined lexicons are not available. A good WCE system should also perform similarly for low- and high-resource languages in order to enable unbiased comparisons across different cultures and environments. Unfortunately, the current state-of-the-art solution, the LENA system, is based on proprietary software and has only been optimized for American English, limiting its applicability. In this paper, we build on existing work on WCE and present the steps we have taken towards a freely available system for WCE that can be adapted to different languages or dialects with a limited amount of orthographically transcribed speech data. Our system is based on language-independent syllabification of speech, followed by a language-dependent mapping from syllable counts (and a number of other acoustic features) to the corresponding word count estimates. We evaluate our system on samples from daylong infant recordings from six different corpora consisting of several languages and socioeconomic environments, all manually annotated with the same protocol to allow direct comparison. We compare a number of alternative techniques for the two key components in our system: speech activity detection and automatic syllabification of speech. As a result, we show that our system can reach relatively consistent WCE accuracy across multiple corpora and languages (with some limitations). In addition, the system outperforms LENA on three of the four corpora consisting of different varieties of English. We also demonstrate how an automatic neural network-based syllabifier, when trained on multiple languages, generalizes well to novel languages beyond the training data, outperforming two previously proposed unsupervised syllabifiers as a feature extractor for WCE.
  • Ravignani, A., Bowling, D. L., & Fitch, W. T. (2014). Chorusing, synchrony, and the evolutionary functions of rhythm. Frontiers in Psychology, 5: 1118. doi:10.3389/fpsyg.2014.01118.

    Abstract

    A central goal of biomusicology is to understand the biological basis of human musicality. One approach to this problem has been to compare core components of human musicality (relative pitch perception, entrainment, etc.) with similar capacities in other animal species. Here we extend and clarify this comparative approach with respect to rhythm. First, whereas most comparisons between human music and animal acoustic behavior have focused on spectral properties (melody and harmony), we argue for the central importance of temporal properties, and propose that this domain is ripe for further comparative research. Second, whereas most rhythm research in non-human animals has examined animal timing in isolation, we consider how chorusing dynamics can shape individual timing, as in human music and dance, arguing that group behavior is key to understanding the adaptive functions of rhythm. To illustrate the interdependence between individual and chorusing dynamics, we present a computational model of chorusing agents relating individual call timing with synchronous group behavior. Third, we distinguish and clarify mechanistic and functional explanations of rhythmic phenomena, often conflated in the literature, arguing that this distinction is key for understanding the evolution of musicality. Fourth, we expand biomusicological discussions beyond the species typically considered, providing an overview of chorusing and rhythmic behavior across a broad range of taxa (orthopterans, fireflies, frogs, birds, and primates). Finally, we propose an “Evolving Signal Timing” hypothesis, suggesting that similarities between timing abilities in biological species will be based on comparable chorusing behaviors. We conclude that the comparative study of chorusing species can provide important insights into the adaptive function(s) of rhythmic behavior in our “proto-musical” primate ancestors, and thus inform our understanding of the biology and evolution of rhythm in human music and language.
  • Ravignani, A. (2014). Chronometry for the chorusing herd: Hamilton's legacy on context-dependent acoustic signalling—a comment on Herbers (2013). Biology Letters, 10(1): 20131018. doi:10.1098/rsbl.2013.1018.
  • Ravignani, A. (2019). [Review of the book Animal beauty: On the evolution of bological aesthetics by C. Nüsslein-Volhard]. Animal Behaviour, 155, 171-172. doi:10.1016/j.anbehav.2019.07.005.
  • Ravignani, A. (2019). [Review of the book The origins of musicality ed. by H. Honing]. Perception, 48(1), 102-105. doi:10.1177/0301006618817430.
  • Ravignani, A. (2019). Humans and other musical animals [Review of the book The evolving animal orchestra: In search of what makes us musical by Henkjan Honing]. Current Biology, 29(8), R271-R273. doi:10.1016/j.cub.2019.03.013.
  • Ravignani, A., & de Reus, K. (2019). Modelling animal interactive rhythms in communication. Evolutionary Bioinformatics, 15, 1-14. doi:10.1177/1176934318823558.

    Abstract

    Time is one crucial dimension conveying information in animal communication. Evolution has shaped animals’ nervous systems to produce signals with temporal properties fitting their socio-ecological niches. Many quantitative models of mechanisms underlying rhythmic behaviour exist, spanning insects, crustaceans, birds, amphibians, and mammals. However, these computational and mathematical models are often presented in isolation. Here, we provide an overview of the main mathematical models employed in the study of animal rhythmic communication among conspecifics. After presenting basic definitions and mathematical formalisms, we discuss each individual model. These computational models are then compared using simulated data to uncover similarities and key differences in the underlying mechanisms found across species. Our review of the empirical literature is admittedly limited. We stress the need of using comparative computer simulations – both before and after animal experiments – to better understand animal timing in interaction. We hope this article will serve as a potential first step towards a common computational framework to describe temporal interactions in animals, including humans.

    Additional information

    Supplemental material files
  • Ravignani, A., Verga, L., & Greenfield, M. D. (2019). Interactive rhythms across species: The evolutionary biology of animal chorusing and turn-taking. Annals of the New York Academy of Sciences, 1453(1), 12-21. doi:10.1111/nyas.14230.

    Abstract

    The study of human language is progressively moving toward comparative and interactive frameworks, extending the concept of turn‐taking to animal communication. While such an endeavor will help us understand the interactive origins of language, any theoretical account for cross‐species turn‐taking should consider three key points. First, animal turn‐taking must incorporate biological studies on animal chorusing, namely how different species coordinate their signals over time. Second, while concepts employed in human communication and turn‐taking, such as intentionality, are still debated in animal behavior, lower level mechanisms with clear neurobiological bases can explain much of animal interactive behavior. Third, social behavior, interactivity, and cooperation can be orthogonal, and the alternation of animal signals need not be cooperative. Considering turn‐taking a subset of chorusing in the rhythmic dimension may avoid overinterpretation and enhance the comparability of future empirical work.
  • Ravignani, A. (2019). Everything you always wanted to know about sexual selection in 129 pages [Review of the book Sexual selection: A very short introduction by M. Zuk and L. W. Simmons]. Journal of Mammalogy, 100(6), 2004-2005. doi:10.1093/jmammal/gyz168.
  • Ravignani, A., & Gamba, M. (2019). Evolving musicality [Review of the book The evolving animal orchestra: In search of what makes us musical by Henkjan Honing]. Trends in Ecology and Evolution, 34(7), 583-584. doi:10.1016/j.tree.2019.04.016.
  • Ravignani, A., Kello, C. T., de Reus, K., Kotz, S. A., Dalla Bella, S., Mendez-Arostegui, M., Rapado-Tamarit, B., Rubio-Garcia, A., & de Boer, B. (2019). Ontogeny of vocal rhythms in harbor seal pups: An exploratory study. Current Zoology, 65(1), 107-120. doi:10.1093/cz/zoy055.

    Abstract

    Puppyhood is a very active social and vocal period in a harbor seal's life Phoca vitulina. An important feature of vocalizations is their temporal and rhythmic structure, and understanding vocal timing and rhythms in harbor seals is critical to a cross-species hypothesis in evolutionary neuroscience that links vocal learning, rhythm perception, and synchronization. This study utilized analytical techniques that may best capture rhythmic structure in pup vocalizations with the goal of examining whether (1) harbor seal pups show rhythmic structure in their calls and (2) rhythms evolve over time. Calls of 3 wild-born seal pups were recorded daily over the course of 1-3 weeks; 3 temporal features were analyzed using 3 complementary techniques. We identified temporal and rhythmic structure in pup calls across different time windows. The calls of harbor seal pups exhibit some degree of temporal and rhythmic organization, which evolves over puppyhood and resembles that of other species' interactive communication. We suggest next steps for investigating call structure in harbor seal pups and propose comparative hypotheses to test in other pinniped species.
  • Ravignani, A., Filippi, P., & Fitch, W. T. (2019). Perceptual tuning influences rule generalization: Testing humans with monkey-tailored stimuli. i-Perception, 10(2), 1-5. doi:10.1177/2041669519846135.

    Abstract

    Comparative research investigating how nonhuman animals generalize patterns of auditory stimuli often uses sequences of human speech syllables and reports limited generalization abilities in animals. Here, we reverse this logic, testing humans with stimulus sequences tailored to squirrel monkeys. When test stimuli are familiar (human voices), humans succeed in two types of generalization. However, when the same structural rule is instantiated over unfamiliar but perceivable sounds within squirrel monkeys’ optimal hearing frequency range, human participants master only one type of generalization. These findings have methodological implications for the design of comparative experiments, which should be fair towards all tested species’ proclivities and limitations.

    Additional information

    Supplemental material files
  • Ravignani, A. (2019). Singing seals imitate human speech. Journal of Experimental Biology, 222: jeb208447. doi:10.1242/jeb.208447.
  • Ravignani, A. (2019). Rhythm and synchrony in animal movement and communication. Current Zoology, 65(1), 77-81. doi:10.1093/cz/zoy087.

    Abstract

    Animal communication and motoric behavior develop over time. Often, this temporal dimension has communicative relevance and is organized according to structural patterns. In other words, time is a crucial dimension for rhythm and synchrony in animal movement and communication. Rhythm is defined as temporal structure at a second-millisecond time scale (Kotz et al. 2018). Synchrony is defined as precise co-occurrence of 2 behaviors in time (Ravignani 2017).

    Rhythm, synchrony, and other forms of temporal interaction are taking center stage in animal behavior and communication. Several critical questions include, among others: what species show which rhythmic predispositions? How does a species’ sensitivity for, or proclivity towards, rhythm arise? What are the species-specific functions of rhythm and synchrony, and are there functional trends across species? How did similar or different rhythmic behaviors evolved in different species? This Special Column aims at collecting and contrasting research from different species, perceptual modalities, and empirical methods. The focus is on timing, rhythm and synchrony in the second-millisecond range.

    Three main approaches are commonly adopted to study animal rhythms, with a focus on: 1) spontaneous individual rhythm production, 2) group rhythms, or 3) synchronization experiments. I concisely introduce them below (see also Kotz et al. 2018; Ravignani et al. 2018).
  • Ravignani, A., Dalla Bella, S., Falk, S., Kello, C. T., Noriega, F., & Kotz, S. A. (2019). Rhythm in speech and animal vocalizations: A cross‐species perspective. Annals of the New York Academy of Sciences, 1453(1), 79-98. doi:10.1111/nyas.14166.

    Abstract

    Why does human speech have rhythm? As we cannot travel back in time to witness how speech developed its rhythmic properties and why humans have the cognitive skills to process them, we rely on alternative methods to find out. One powerful tool is the comparative approach: studying the presence or absence of cognitive/behavioral traits in other species to determine which traits are shared between species and which are recent human inventions. Vocalizations of many species exhibit temporal structure, but little is known about how these rhythmic structures evolved, are perceived and produced, their biological and developmental bases, and communicative functions. We review the literature on rhythm in speech and animal vocalizations as a first step toward understanding similarities and differences across species. We extend this review to quantitative techniques that are useful for computing rhythmic structure in acoustic sequences and hence facilitate cross‐species research. We report links between vocal perception and motor coordination and the differentiation of rhythm based on hierarchical temporal structure. While still far from a complete cross‐species perspective of speech rhythm, our review puts some pieces of the puzzle together.
  • Ravignani, A. (2019). Seeking shared ground in space. Science, 366(6466), 696. doi:10.1126/science.aay6955.
  • Ravignani, A. (2019). Timing of antisynchronous calling: A case study in a harbor seal pup (Phoca vitulina). Journal of Comparative Psychology, 133(2), 272-277. doi:10.1037/com0000160.

    Abstract

    Alternative mathematical models predict differences in how animals adjust the timing of their calls. Differences can be measured as the effect of the timing of a conspecific call on the rate and period of calling of a focal animal, and the lag between the two. Here, I test these alternative hypotheses by tapping into harbor seals’ (Phoca vitulina) mechanisms for spontaneous timing. Both socioecology and vocal behavior of harbor seals make them an interesting model species to study call rhythm and timing. Here, a wild-born seal pup was tested in controlled laboratory conditions. Based on previous recordings of her vocalizations and those of others, I designed playback experiments adapted to that specific animal. The call onsets of the animal were measured as a function of tempo, rhythmic regularity, and spectral properties of the playbacks. The pup adapted the timing of her calls in response to conspecifics’ calls. Rather than responding at a fixed time delay, the pup adjusted her calls’ onset to occur at a fraction of the playback tempo, showing a relative-phase antisynchrony. Experimental results were confirmed via computational modeling. This case study lends preliminary support to a classic mathematical model of animal behavior—Hamilton’s selfish herd—in the acoustic domain.
  • Ravignani, A. (2019). Understanding mammals, hands-on [Review of the book Mammalogy techniques lab manual by J. M. Ryan]. Journal of Mammalogy, 100(5), 1695-1696. doi:10.1093/jmammal/gyz132.
  • Ravignani, A., Martins, M., & Fitch, W. T. (2014). Vocal learning, prosody, and basal ganglia: Don't underestimate their complexity. Behavioral and Brain Sciences, 37(6), 570-571. doi:10.1017/S0140525X13004184.

    Abstract

    In response to: Brain mechanisms of acoustic communication in humans and nonhuman primates: An evolutionary perspective

    Abstract:
    Ackermann et al.'s arguments in the target article need sharpening and rethinking at both mechanistic and evolutionary levels. First, the authors' evolutionary arguments are inconsistent with recent evidence concerning nonhuman animal rhythmic abilities. Second, prosodic intonation conveys much more complex linguistic information than mere emotional expression. Finally, human adults' basal ganglia have a considerably wider role in speech modulation than Ackermann et al. surmise.
  • Raviv, L., Meyer, A. S., & Lev-Ari, S. (2019). Larger communities create more systematic languages. Proceedings of the Royal Society B: Biological Sciences, 286(1907): 20191262. doi:10.1098/rspb.2019.1262.

    Abstract

    Understanding worldwide patterns of language diversity has long been a goal for evolutionary scientists, linguists and philosophers. Research over the past decade has suggested that linguistic diversity may result from differences in the social environments in which languages evolve. Specifically, recent work found that languages spoken in larger communities typically have more systematic grammatical structures. However, in the real world, community size is confounded with other social factors such as network structure and the number of second languages learners in the community, and it is often assumed that linguistic simplification is driven by these factors instead. Here, we show that in contrast to previous assumptions, community size has a unique and important influence on linguistic structure. We experimentally examine the live formation of new languages created in the laboratory by small and larger groups, and find that larger groups of interacting participants develop more systematic languages over time, and do so faster and more consistently than small groups. Small groups also vary more in their linguistic behaviours, suggesting that small communities are more vulnerable to drift. These results show that community size predicts patterns of language diversity, and suggest that an increase in community size might have contributed to language evolution.
  • Raviv, L., Meyer, A. S., & Lev-Ari, S. (2019). Compositional structure can emerge without generational transmission. Cognition, 182, 151-164. doi:10.1016/j.cognition.2018.09.010.

    Abstract

    Experimental work in the field of language evolution has shown that novel signal systems become more structured over time. In a recent paper, Kirby, Tamariz, Cornish, and Smith (2015) argued that compositional languages can emerge only when languages are transmitted across multiple generations. In the current paper, we show that compositional languages can emerge in a closed community within a single generation. We conducted a communication experiment in which we tested the emergence of linguistic structure in different micro-societies of four participants, who interacted in alternating dyads using an artificial language to refer to novel meanings. Importantly, the communication included two real-world aspects of language acquisition and use, which introduce compressibility pressures: (a) multiple interaction partners and (b) an expanding meaning space. Our results show that languages become significantly more structured over time, with participants converging on shared, stable, and compositional lexicons. These findings indicate that new learners are not necessary for the formation of linguistic structure within a community, and have implications for related fields such as developing sign languages and creoles.
  • Reber, S. A., Šlipogor, V., Oh, J., Ravignani, A., Hoeschele, M., Bugnyar, T., & Fitch, W. T. (2019). Common marmosets are sensitive to simple dependencies at variable distances in an artificial grammar. Evolution and Human Behavior, 40(2), 214-221. doi:10.1016/j.evolhumbehav.2018.11.006.

    Abstract

    Recognizing that two elements within a sequence of variable length depend on each other is a key ability in understanding the structure of language and music. Perception of such interdependencies has previously been documented in chimpanzees in the visual domain and in human infants and common squirrel monkeys with auditory playback experiments, but it remains unclear whether it typifies primates in general. Here, we investigated the ability of common marmosets (Callithrix jacchus) to recognize and respond to such dependencies. We tested subjects in a familiarization-discrimination playback experiment using stimuli composed of pure tones that either conformed or did not conform to a grammatical rule. After familiarization to sequences with dependencies, marmosets spontaneously discriminated between sequences containing and lacking dependencies (‘consistent’ and ‘inconsistent’, respectively), independent of stimulus length. Marmosets looked more often to the sound source when hearing sequences consistent with the familiarization stimuli, as previously found in human infants. Crucially, looks were coded automatically by computer software, avoiding human bias. Our results support the hypothesis that the ability to perceive dependencies at variable distances was already present in the common ancestor of all anthropoid primates (Simiiformes).
  • Redmann, A., FitzPatrick, I., & Indefrey, P. (2019). The time course of colour congruency effects in picture naming. Acta Psychologica, 196, 96-108. doi:10.1016/j.actpsy.2019.04.005.

    Abstract

    In our interactions with people and objects in the world around us, as well as in communicating our thoughts, we
    rely on the use of conceptual knowledge stored in long-term memory. From a frame-theoretic point of view, a
    concept is represented by a central node and recursive attribute-value structures further specifying the concept.
    The present study explores whether and how the activation of an attribute within a frame might influence access
    to the concept's name in language production, focussing on the colour attribute. Colour has been shown to
    contribute to object recognition, naming, and memory retrieval, and there is evidence that colour plays a different
    role in naming objects that have a typical colour (high colour-diagnostic objects such as tomatoes) than in
    naming objects without a typical colour (low colour-diagnostic objects such as bicycles). We report two behavioural
    experiments designed to reveal potential effects of the activation of an object's typical colour on naming
    the object in a picture-word interference paradigm. This paradigm was used to investigate whether naming is
    facilitated when typical colours are presented alongside the to-be-named picture (e.g., the word “red” superimposed
    on the picture of a tomato), compared to atypical colours (such as “brown”), unrelated adjectives (such
    as “fast”), or random letter strings. To further explore the time course of these potential effects, the words were
    presented at different time points relative to the to-be-named picture (Exp. 1: −400 ms, Exp. 2: −200 ms, 0 ms,
    and+200 ms). By including both high and low colour-diagnostic objects, it was possible to explore whether the
    activation of a colour differentially affects naming of objects that have a strong association with a typical colour.
    The results showed that (pre-)activation of the appropriate colour attribute facilitated naming compared to an
    inappropriate colour. This was only the case for objects closely connected with a typical colour. Consequences of
    these findings for frame-theoretic accounts of conceptual representation are discussed.
  • Redmann, A., FitzPatrick, I., Hellwig, F. M., & Indefrey, P. (2014). The use of conceptual components in language production: an ERP study. Frontiers in Psychology, 5: 363. doi:10.3389/fpsyg.2014.00363.

    Abstract

    According to frame-theory, concepts can be represented as structured frames that contain conceptual attributes (e.g., "color") and their values (e.g., "red"). A particular color value can be seen as a core conceptual component for (high color-diagnostic; HCD) objects (e.g., bananas) which are strongly associated with a typical color, but less so for (low color-diagnostic; LCD) objects (e.g., bicycles) that exist in many different colors. To investigate whether the availability of a core conceptual component (color) affects lexical access in language production, we conducted two experiments on the naming of visually presented HCD and LCD objects. Experiment 1 showed that, when naming latencies were matched for colored HCD and LCD objects, achromatic HCD objects were named more slowly than achromatic LCD objects. In Experiment 2 we recorded ERPs while participants performed a picture-naming task, in which achromatic target pictures were either preceded by an appropriately colored box (primed condition) or a black and white checkerboard (unprimed condition). We focused on the P2 component, which has been shown to reflect difficulty of lexical access in language production. Results showed that HCD resulted in slower object-naming and a more pronounced P2. Priming also yielded a more positive P2 but did not result in an RT difference. ERP waveforms on the P1, P2 and N300 components showed a priming by color-diagnosticity interaction, the effect of color priming being stronger for HCD objects than for LCD objects. The effect of color-diagnosticity on the P2 component suggests that the slower naming of achromatic HCD objects is (at least in part) due to more difficult lexical retrieval. Hence, the color attribute seems to affect lexical retrieval in HCD words. The interaction between priming and color-diagnosticity indicates that priming with a feature hinders lexical access, especially if the feature is a core feature of the target object.
  • De Resende, N. C. A., Mota, M. B., & Seuren, P. A. M. (2019). The processing of grammatical gender agreement in Brazilian Portuguese: ERP evidence in favor of a single route. Journal of Psycholinguistic Research, 48(1), 181-198. doi:10.1007/s10936-018-9598-z.

    Abstract

    The present study used event-related potentials to investigate whether the processing of grammatical gender agreement involving gender regular and irregular forms recruit the same or distinct neurocognitive mechanisms and whether different grammatical gender agreement conditions elicit the same or diverse ERP signals. Native speakers of Brazilian Portuguese read sentences containing congruent and incongruent grammatical gender agreement between a determiner and a regular or an irregular form (condition 1) and between a regular or an irregular form and an adjective (condition 2). However, in condition 2, trials with incongruent regular forms elicited more positive ongoing waveforms than trial with incongruent irregular forms. We found a biphasic LAN/P600 effect for gender agreement violation involving regular and irregular forms in both conditions. Our findings suggest that gender agreement between determiner and nouns recruits the same neurocognitive mechanisms regardless of the nouns’ form and that, depending on the grammatical class of the words involved in gender agreement, differences in ERP signals can emerge
  • Rissman, L., & Majid, A. (2019). Thematic roles: Core knowledge or linguistic construct? Psychonomic Bulletin & Review, 26(6), 1850-1869. doi:10.3758/s13423-019-01634-5.

    Abstract

    The status of thematic roles such as Agent and Patient in cognitive science is highly controversial: To some they are universal components of core knowledge, to others they are scholarly fictions without psychological reality. We address this debate by posing two critical questions: to what extent do humans represent events in terms of abstract role categories, and to what extent are these categories shaped by universal cognitive biases? We review a range of literature that contributes answers to these questions: psycholinguistic and event cognition experiments with adults, children, and infants; typological studies grounded in cross-linguistic data; and studies of emerging sign languages. We pose these questions for a variety of roles and find that the answers depend on the role. For Agents and Patients, there is strong evidence for abstract role categories and a universal bias to distinguish the two roles. For Goals and Recipients, we find clear evidence for abstraction but mixed evidence as to whether there is a bias to encode Goals and Recipients as part of one or two distinct categories. Finally, we discuss the Instrumental role and do not find clear evidence for either abstraction or universal biases to structure instrumental categories.
  • Roberts, S. G., Dediu, D., & Moisik, S. R. (2014). How to speak Neanderthal. New Scientist, 222(2969), 40-41. doi:10.1016/S0262-4079(14)60970-2.
  • Rodd, J., Bosker, H. R., Ten Bosch, L., & Ernestus, M. (2019). Deriving the onset and offset times of planning units from acoustic and articulatory measurements. The Journal of the Acoustical Society of America, 145(2), EL161-EL167. doi:10.1121/1.5089456.

    Abstract

    Many psycholinguistic models of speech sequence planning make claims about the onset and offset times of planning units, such as words, syllables, and phonemes. These predictions typically go untested, however, since psycholinguists have assumed that the temporal dynamics of the speech signal is a poor index of the temporal dynamics of the underlying speech planning process. This article argues that this problem is tractable, and presents and validates two simple metrics that derive planning unit onset and offset times from the acoustic signal and articulatographic data.
  • Rodenas-Cuadrado, P., Ho, J., & Vernes, S. C. (2014). Shining a light on CNTNAP2: Complex functions to complex disorders. European Journal of Human Genetics, 22(2), 171-178. doi:10.1038/ejhg.2013.100.

    Abstract

    The genetic basis of complex neurological disorders involving language are poorly understood, partly due to the multiple additive genetic risk factors that are thought to be responsible. Furthermore, these conditions are often syndromic in that they have a range of endophenotypes that may be associated with the disorder and that may be present in different combinations in patients. However, the emergence of individual genes implicated across multiple disorders has suggested that they might share similar underlying genetic mechanisms. The CNTNAP2 gene is an excellent example of this, as it has recently been implicated in a broad range of phenotypes including autism spectrum disorder (ASD), schizophrenia, intellectual disability, dyslexia and language impairment. This review considers the evidence implicating CNTNAP2 in these conditions, the genetic risk factors and mutations that have been identified in patient and population studies and how these relate to patient phenotypes. The role of CNTNAP2 is examined in the context of larger neurogenetic networks during development and disorder, given what is known regarding the regulation and function of this gene. Understanding the role of CNTNAP2 in diverse neurological disorders will further our understanding of how combinations of individual genetic risk factors can contribute to complex conditions
  • Roelofs, A., Meyer, A. S., & Levelt, W. J. M. (1998). A case for the lemma/lexeme distinction in models of speaking: Comment on Caramazza and Miozzo (1997). Cognition, 69(2), 219-230. doi:10.1016/S0010-0277(98)00056-0.

    Abstract

    In a recent series of papers, Caramazza and Miozzo [Caramazza, A., 1997. How many levels of processing are there in lexical access? Cognitive Neuropsychology 14, 177-208; Caramazza, A., Miozzo, M., 1997. The relation between syntactic and phonological knowledge in lexical access: evidence from the 'tip-of-the-tongue' phenomenon. Cognition 64, 309-343; Miozzo, M., Caramazza, A., 1997. On knowing the auxiliary of a verb that cannot be named: evidence for the independence of grammatical and phonological aspects of lexical knowledge. Journal of Cognitive Neuropsychology 9, 160-166] argued against the lemma/lexeme distinction made in many models of lexical access in speaking, including our network model [Roelofs, A., 1992. A spreading-activation theory of lemma retrieval in speaking. Cognition 42, 107-142; Levelt, W.J.M., Roelofs, A., Meyer, A.S., 1998. A theory of lexical access in speech production. Behavioral and Brain Sciences, (in press)]. Their case was based on the observations that grammatical class deficits of brain-damaged patients and semantic errors may be restricted to either spoken or written forms and that the grammatical gender of a word and information about its form can be independently available in tip-of-the-tongue stales (TOTs). In this paper, we argue that though our model is about speaking, not taking position on writing, extensions to writing are possible that are compatible with the evidence from aphasia and speech errors. Furthermore, our model does not predict a dependency between gender and form retrieval in TOTs. Finally, we argue that Caramazza and Miozzo have not accounted for important parts of the evidence motivating the lemma/lexeme distinction, such as word frequency effects in homophone production, the strict ordering of gender and pho neme access in LRP data, and the chronometric and speech error evidence for the production of complex morphology.
  • Roelofs, A., & Meyer, A. S. (1998). Metrical structure in planning the production of spoken words. Journal of Experimental Psychology: Learning, Memory, and Cognition, 24, 922-939. doi:10.1037/0278-7393.24.4.922.

    Abstract

    According to most models of speech production, the planning of spoken words involves the independent retrieval of segments and metrical frames followed by segment-to-frame association. In some models, the metrical frame includes a specification of the number and ordering of consonants and vowels, but in the word-form encoding by activation and verification (WEAVER) model (A. Roelofs, 1997), the frame specifies only the stress pattern across syllables. In 6 implicit priming experiments, on each trial, participants produced 1 word out of a small set as quickly as possible. In homogeneous sets, the response words shared word-initial segments, whereas in heterogeneous sets, they did not. Priming effects from shared segments depended on all response words having the same number of syllables and stress pattern, but not on their having the same number of consonants and vowels. No priming occurred when the response words had only the same metrical frame but shared no segments. Computer simulations demonstrated that WEAVER accounts for the findings.
  • Roelofs, A. (1998). Rightward incrementality in encoding simple phrasal forms in speech production. Journal of Experimental Psychology: Learning, Memory, and Cognition, 24, 904-921. doi:10.1037/0278-7393.24.4.904.

    Abstract

    This article reports 7 experiments investigating whether utterances are planned in a parallel or rightward incremental fashion during language production. The experiments examined the role of linear order, length, frequency, and repetition in producing Dutch verb–particle combinations. On each trial, participants produced 1 utterance out of a set of 3 as quickly as possible. The responses shared part of their form or not. For particle-initial infinitives, facilitation was obtained when the responses shared the particle but not when they shared the verb. For verb-initial imperatives, however, facilitation was obtained for the verbs but not for the particles. The facilitation increased with length, decreased with frequency, and was independent of repetition. A simple rightward incremental model accounts quantitatively for the results.
  • Rojas-Berscia, L. M. (2014). Towards an ontological theory of language: Radical minimalism, memetic linguistics and linguistic engineering, prolegomena. Ianua: Revista Philologica Romanica, 14(2), 69-81.

    Abstract

    In contrast to what has happened in other sciences, the establishment of what is the study object of linguistics as an autonomous discipline has not been resolved yet. Ranging from external explanations of language as a system (Saussure 1916), the existence of a mental innate language capacity or UG (Chomsky 1965, 1981, 1995), the cognitive complexity of the mental language capacity and the acquisition of languages in use (Langacker 1987, 1991, 2008; Croft & Cruse 2004; Evans & Levinson 2009) most, if not all, theoretical approaches have provided explanations that somehow isolated our discipline from developments in other major sciences, such as physics and evolutionary biology. In the present article I will present some of the basic issues regarding the current debate in the discipline, in order to identify some problems regarding the modern assumptions on language. Furthermore, a new proposal on how to approach linguistic phenomena will be given, regarding what I call «the main three» basic problems our discipline has to face ulteriorly. Finally, some preliminary ideas on a new paradigm of Linguistics which tries to answer these three basic problems will be presented, mainly based in the recently-born formal theory called Radical Minimalism (Krivochen 2011a, 2011b) and what I dub Memetic Linguistics and Linguistic Engineering
  • Roorda, D., Kalkman, G., Naaijer, M., & Van Cranenburgh, A. (2014). LAF-Fabric: A data analysis tool for linguistic annotation framework with an application to the Hebrew Bible. Computational linguistics in the Netherlands, 4, 105-120.

    Abstract

    The Linguistic Annotation Framework (LAF) provides a general, extensible stand-o markup system for corpora. This paper discusses LAF-Fabric, a new tool to analyse LAF resources in general with an extension to process the Hebrew Bible in particular. We rst walk through the history of the Hebrew Bible as text database in decennium-wide steps. Then we describe how LAF-Fabric may serve as an analysis tool for this corpus. Finally, we describe three analytic projects/work ows that benet from the new LAF representation: 1) the study of linguistic variation: extract cooccurrence data of common nouns between the books of the Bible (Martijn Naaijer); 2) the study of the grammar of Hebrew poetry in the Psalms: extract clause typology (Gino Kalkman); 3) construction of a parser of classical Hebrew by Data Oriented Parsing: generate tree structures from the database (Andreas van Cranenburgh).
  • Rösler, D., & Skiba, R. (1988). Möglichkeiten für den Einsatz einer Lehrmaterial-Datenbank in der Lehrerfortbildung. Deutsch lernen, 14(1), 24-31.
  • Roswandowitz, C., Mathias, S. R., Hintz, F., Kreitewolf, J., Schelinski, S., & von Kriegstein, K. (2014). Two cases of selective developmental voice-recognition impairments. Current Biology, 24(19), 2348-2353. doi:10.1016/j.cub.2014.08.048.

    Abstract

    Recognizing other individuals is an essential skill in humans and in other species [1, 2 and 3]. Over the last decade, it has become increasingly clear that person-identity recognition abilities are highly variable. Roughly 2% of the population has developmental prosopagnosia, a congenital deficit in recognizing others by their faces [4]. It is currently unclear whether developmental phonagnosia, a deficit in recognizing others by their voices [5], is equally prevalent, or even whether it actually exists. Here, we aimed to identify cases of developmental phonagnosia. We collected more than 1,000 data sets from self-selected German individuals by using a web-based screening test that was designed to assess their voice-recognition abilities. We then examined potentially phonagnosic individuals by using a comprehensive laboratory test battery. We found two novel cases of phonagnosia: AS, a 32-year-old female, and SP, a 32-year-old male; both are otherwise healthy academics, have normal hearing, and show no pathological abnormalities in brain structure. The two cases have comparable patterns of impairments: both performed at least 2 SDs below the level of matched controls on tests that required learning new voices, judging the familiarity of famous voices, and discriminating pitch differences between voices. In both cases, only voice-identity processing per se was affected: face recognition, speech intelligibility, emotion recognition, and musical ability were all comparable to controls. The findings confirm the existence of developmental phonagnosia as a modality-specific impairment and allow a first rough prevalence estimate.

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  • Rowbotham, S., Wardy, A. J., Lloyd, D. M., Wearden, A., & Holler, J. (2014). Increased pain intensity is associated with greater verbal communication difficulty and increased production of speech and co-speech gestures. PLoS One, 9(10): e110779. doi:10.1371/journal.pone.0110779.

    Abstract

    Effective pain communication is essential if adequate treatment and support are to be provided. Pain communication is often multimodal, with sufferers utilising speech, nonverbal behaviours (such as facial expressions), and co-speech gestures (bodily movements, primarily of the hands and arms that accompany speech and can convey semantic information) to communicate their experience. Research suggests that the production of nonverbal pain behaviours is positively associated with pain intensity, but it is not known whether this is also the case for speech and co-speech gestures. The present study explored whether increased pain intensity is associated with greater speech and gesture production during face-to-face communication about acute, experimental pain. Participants (N = 26) were exposed to experimentally elicited pressure pain to the fingernail bed at high and low intensities and took part in video-recorded semi-structured interviews. Despite rating more intense pain as more difficult to communicate (t(25) = 2.21, p = .037), participants produced significantly longer verbal pain descriptions and more co-speech gestures in the high intensity pain condition (Words: t(25) = 3.57, p = .001; Gestures: t(25) = 3.66, p = .001). This suggests that spoken and gestural communication about pain is enhanced when pain is more intense. Thus, in addition to conveying detailed semantic information about pain, speech and co-speech gestures may provide a cue to pain intensity, with implications for the treatment and support received by pain sufferers. Future work should consider whether these findings are applicable within the context of clinical interactions about pain.
  • Rowbotham, S., Holler, J., Lloyd, D., & Wearden, A. (2014). Handling pain: The semantic interplay of speech and co-speech hand gestures in the description of pain sensations. Speech Communication, 57, 244-256. doi:10.1016/j.specom.2013.04.002.

    Abstract

    Pain is a private and subjective experience about which effective communication is vital, particularly in medical settings. Speakers often represent information about pain sensation in both speech and co-speech hand gestures simultaneously, but it is not known whether gestures merely replicate spoken information or complement it in some way. We examined the representational contribution
    of gestures in a range of consecutive analyses. Firstly, we found that 78% of speech units containing pain sensation were accompanied by gestures, with 53% of these gestures representing pain sensation. Secondly, in 43% of these instances, gestures represented pain sensation information that was not contained in speech, contributing additional, complementary information to the pain sensation message.
    Finally, when applying a specificity analysis, we found that in contrast with research in different domains of talk, gestures did not make the pain sensation information in speech more specific. Rather, they complemented the verbal pain message by representing different
    aspects of pain sensation, contributing to a fuller representation of pain sensation than speech alone. These findings highlight the importance of gestures in communicating about pain sensation and suggest that this modality provides additional information to supplement and clarify the often ambiguous verbal pain message

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  • Rowland, C. F., & Pine, J. M. (2000). Subject-auxiliary inversion errors and wh-question acquisition: what children do know? Journal of Child Language, 27(1), 157-181.

    Abstract

    The present paper reports an analysis of correct wh-question production and subject–auxiliary inversion errors in one child's early wh-question data (age 2; 3.4 to 4; 10.23). It is argued that two current movement rule accounts (DeVilliers, 1991; Valian, Lasser & Mandelbaum, 1992) cannot explain the patterning of early wh-questions. However, the data can be explained in terms of the child's knowledge of particular lexically-specific wh-word+auxiliary combinations, and the pattern of inversion and uninversion predicted from the relative frequencies of these combinations in the mother's speech. The results support the claim that correctly inverted wh-questions can be produced without access to a subject–auxiliary inversion rule and are consistent with the constructivist claim that a distributional learning mechanism that learns and reproduces lexically-specific formulae heard in the input can explain much of the early multi-word speech data. The implications of these results for movement rule-based and constructivist theories of grammatical development are discussed.
  • Rubio-Fernández, P. (2019). Memory and inferential processes in false-belief tasks: An investigation of the unexpected-contents paradigm. Journal of Experimental Child Psychology, 177, 297-312. doi:10.1016/j.jecp.2018.08.011.

    Abstract

    This study investigated the extent to which 3- and 4-year-old children may rely on associative memory representations to pass an unexpected-contents false-belief task. In Experiment 1, 4-year-olds performed at chance in both a standard Smarties task and a modified version highlighting the secrecy of the contents of the tube. These results were interpreted as evidence that having to infer the answer to a false-belief question (without relying on memory representations) is generally difficult for preschool children. In Experiments 2a, 2b, and 2c, 3-year-olds were tested at 3-month intervals during their first year of preschool and showed better performance in a narrative version of the Smarties task (chance level) than in the standard version (below-chance level). These children performed even better in an associative version of the narrative task (above-chance level) where they could form a memory representation associating the protagonist with the expected contents of a box. The results of a true-belief control suggest that some of these children may have relied on their memory of the protagonist’s preference for the original contents of the box (rather than their understanding of what the protagonist was expecting to find inside). This suggests that when 3-year-olds passed the associative unexpected-contents task, some may have been keeping track of the protagonist’s initial preference and not only (or not necessarily) of the protagonist’s false belief. These results are interpreted in the light of current accounts of Theory of Mind development and failed replications of verbal false-belief tasks.
  • Rubio-Fernández, P. (2019). Publication standards in infancy research: Three ways to make Violation-of-Expectation studies more reliable. Infant Behavior and Development, 54, 177-188. doi:10.1016/j.infbeh.2018.09.009.

    Abstract

    The Violation-of-Expectation paradigm is a widespread paradigm in infancy research that relies on looking time as an index of surprise. This methodological review aims to increase the reliability of future VoE studies by proposing to standardize reporting practices in this literature. I review 15 VoE studies on false-belief reasoning, which used a variety of experimental parameters. An analysis of the distribution of p-values across experiments suggests an absence of p-hacking. However, there are potential concerns with the accuracy of their measures of infants’ attention, as well as with the lack of a consensus on the parameters that should be used to set up VoE studies. I propose that (i) future VoE studies ought to report not only looking times (as a measure of attention) but also looking-away times (as an equally important measure of distraction); (ii) VoE studies must offer theoretical justification for the parameters they use, and (iii) when parameters are selected through piloting, pilot data must be reported in order to understand how parameters were selected. Future VoE studies ought to maximize the accuracy of their measures of infants’ attention since the reliability of their results and the validity of their conclusions both depend on the accuracy of their measures.
  • Rubio-Fernández, P., Mollica, F., Oraa Ali, M., & Gibson, E. (2019). How do you know that? Automatic belief inferences in passing conversation. Cognition, 193: 104011. doi:10.1016/j.cognition.2019.104011.

    Abstract

    There is an ongoing debate, both in philosophy and psychology, as to whether people are able to automatically infer what others may know, or whether they can only derive belief inferences by deploying cognitive resources. Evidence from laboratory tasks, often involving false beliefs or visual-perspective taking, has suggested that belief inferences are cognitively costly, controlled processes. Here we suggest that in everyday conversation, belief reasoning is pervasive and therefore potentially automatic in some cases. To test this hypothesis, we conducted two pre-registered self-paced reading experiments (N1 = 91, N2 = 89). The results of these experiments showed that participants slowed down when a stranger commented ‘That greasy food is bad for your ulcer’ relative to conditions where a stranger commented on their own ulcer or a friend made either comment – none of which violated participants’ common-ground expectations. We conclude that Theory of Mind models need to account for belief reasoning in conversation as it is at the center of everyday social interaction
  • Rubio-Fernández, P. (2019). Overinformative Speakers Are Cooperative: Revisiting the Gricean Maxim of Quantity. Cognitive Science, 43: e12797. doi:10.1111/cogs.12797.

    Abstract

    A pragmatic account of referential communication is developed which presents an alternative to traditional Gricean accounts by focusing on cooperativeness and efficiency, rather than informativity. The results of four language-production experiments support the view that speakers can be cooperative when producing redundant adjectives, doing so more often when color modification could facilitate the listener's search for the referent in the visual display (Experiment 1a). By contrast, when the listener knew which shape was the target, speakers did not produce redundant color adjectives (Experiment 1b). English speakers used redundant color adjectives more often than Spanish speakers, suggesting that speakers are sensitive to the differential efficiency of prenominal and postnominal modification (Experiment 2). Speakers were also cooperative when using redundant size adjectives (Experiment 3). Overall, these results show how discriminability affects a speaker's choice of referential expression above and beyond considerations of informativity, supporting the view that redundant speakers can be cooperative.
  • Sadakata, M., & McQueen, J. M. (2014). Individual aptitude in Mandarin lexical tone perception predicts effectiveness of high-variability training. Frontiers in Psychology, 5: 1318. doi:10.3389/fpsyg.2014.01318.

    Abstract

    Although the high-variability training method can enhance learning of non-native speech categories, this can depend on individuals’ aptitude. The current study asked how general the effects of perceptual aptitude are by testing whether they occur with training materials spoken by native speakers and whether they depend on the nature of the to-be-learned material. Forty-five native Dutch listeners took part in a five-day training procedure in which they identified bisyllabic Mandarin pseudowords (e.g., asa) pronounced with different lexical tone combinations. The training materials were presented to different groups of listeners at three levels of variability: low (many repetitions of a limited set of words recorded by a single speaker), medium (fewer repetitions of a more variable set of words recorded by 3 speakers) and high (similar to medium but with 5 speakers). Overall, variability did not influence learning performance, but this was due to an interaction with individuals’ perceptual aptitude: increasing variability hindered improvements in performance for low-aptitude perceivers while it helped improvements in performance for high-aptitude perceivers. These results show that the previously observed interaction between individuals’ aptitude and effects of degree of variability extends to natural tokens of Mandarin speech. This interaction was not found, however, in a closely-matched study in which native Dutch listeners were trained on the Japanese geminate/singleton consonant contrast. This may indicate that the effectiveness of high-variability training depends not only on individuals’ aptitude in speech perception but also on the nature of the categories being acquired.
  • Sakarias, M., & Flecken, M. (2019). Keeping the result in sight and mind: General cognitive principles and language-specific influences in the perception and memory of resultative events. Cognitive Science, 43(1), 1-30. doi:10.1111/cogs.12708.

    Abstract

    We study how people attend to and memorize endings of events that differ in the degree to which objects in them are affected by an action: Resultative events show objects that undergo a visually salient change in state during the course of the event (peeling a potato), and non‐resultative events involve objects that undergo no, or only partial state change (stirring in a pan). We investigate general cognitive principles, and potential language‐specific influences, in verbal and nonverbal event encoding and memory, across two experiments with Dutch and Estonian participants. Estonian marks a viewer's perspective on an event's result obligatorily via grammatical case on direct object nouns: Objects undergoing a partial/full change in state in an event are marked with partitive/accusative case, respectively. Therefore, we hypothesized increased saliency of object states and event results in Estonian speakers, as compared to speakers of Dutch. Findings show (a) a general cognitive principle of attending carefully to endings of resultative events, implying cognitive saliency of object states in event processing; (b) a language‐specific boost on attention and memory of event results under verbal task demands in Estonian speakers. Results are discussed in relation to theories of event cognition, linguistic relativity, and thinking for speaking.
  • Sanchis-Trilles, G., Alabau, V., Buck, C., Carl, M., Casacuberta, F., García Martínez, M., Germann, U., González Rubio, J., Hill, R. L., Koehn, P., Leiva, L. A., Mesa-Lao, B., Ortiz Martínez, D., Saint-Amand, H., Tsoukala, C., & Vidal, E. (2014). Interactive translation prediction versus conventional post-editing in practice: a study with the CasMaCat workbench. Machine Translation, 28(3-4), 217-235. doi:10.1007/s10590-014-9157-9.

    Abstract

    We conducted a field trial in computer-assisted professional translation to compare interactive translation prediction (ITP) against conventional post-editing (PE) of machine translation (MT) output. In contrast to the conventional PE set-up, where an MT system first produces a static translation hypothesis that is then edited by a professional (hence “post-editing”), ITP constantly updates the translation hypothesis in real time in response to user edits. Our study involved nine professional translators and four reviewers working with the web-based CasMaCat workbench. Various new interactive features aiming to assist the post-editor/translator were also tested in this trial. Our results show that even with little training, ITP can be as productive as conventional PE in terms of the total time required to produce the final translation. Moreover, translation editors working with ITP require fewer key strokes to arrive at the final version of their translation.

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  • Sandberg, A., Lansner, A., Petersson, K. M., & Ekeberg, Ö. (2000). A palimpsest memory based on an incremental Bayesian learning rule. Neurocomputing, 32(33), 987-994. doi:10.1016/S0925-2312(00)00270-8.

    Abstract

    Capacity limited memory systems need to gradually forget old information in order to avoid catastrophic forgetting where all stored information is lost. This can be achieved by allowing new information to overwrite old, as in the so-called palimpsest memory. This paper describes a new such learning rule employed in an attractor neural network. The network does not exhibit catastrophic forgetting, has a capacity dependent on the learning time constant and exhibits recency e!ects in retrieval
  • Satizabal, C. L., Adams, H. H. H., Hibar, D. P., White, C. C., Knol, M. J., Stein, J. L., Scholz, M., Sargurupremraj, M., Jahanshad, N., Roshchupkin, G. V., Smith, A. V., Bis, J. C., Jian, X., Luciano, M., Hofer, E., Teumer, A., Van der Lee, S. J., Yang, J., Yanek, L. R., Lee, T. V. and 271 moreSatizabal, C. L., Adams, H. H. H., Hibar, D. P., White, C. C., Knol, M. J., Stein, J. L., Scholz, M., Sargurupremraj, M., Jahanshad, N., Roshchupkin, G. V., Smith, A. V., Bis, J. C., Jian, X., Luciano, M., Hofer, E., Teumer, A., Van der Lee, S. J., Yang, J., Yanek, L. R., Lee, T. V., Li, S., Hu, Y., Koh, J. Y., Eicher, J. D., Desrivières, S., Arias-Vasquez, A., Chauhan, G., Athanasiu, L., Renteria, M. E., Kim, S., Höhn, D., Armstrong, N. J., Chen, Q., Holmes, A. J., Den Braber, A., Kloszewska, I., Andersson, M., Espeseth, T., Grimm, O., Abramovic, L., Alhusaini, S., Milaneschi, Y., Papmeyer, M., Axelsson, T., Ehrlich, S., Roiz-Santiañez, R., Kraemer, B., Håberg, A. K., Jones, H. J., Pike, G. B., Stein, D. J., Stevens, A., Bralten, J., Vernooij, M. W., Harris, T. B., Filippi, I., Witte, A. V., Guadalupe, T., Wittfeld, K., Mosley, T. H., Becker, J. T., Doan, N. T., Hagenaars, S. P., Saba, Y., Cuellar-Partida, G., Amin, N., Hilal, S., Nho, K., Karbalai, N., Arfanakis, K., Becker, D. M., Ames, D., Goldman, A. L., Lee, P. H., Boomsma, D. I., Lovestone, S., Giddaluru, S., Le Hellard, S., Mattheisen, M., Bohlken, M. M., Kasperaviciute, D., Schmaal, L., Lawrie, S. M., Agartz, I., Walton, E., Tordesillas-Gutierrez, D., Davies, G. E., Shin, J., Ipser, J. C., Vinke, L. N., Hoogman, M., Jia, T., Burkhardt, R., Klein, M., Crivello, F., Janowitz, D., Carmichael, O., Haukvik, U. K., Aribisala, B. S., Schmidt, H., Strike, L. T., Cheng, C.-Y., Risacher, S. L., Pütz, B., Fleischman, D. A., Assareh, A. A., Mattay, V. S., Buckner, R. L., Mecocci, P., Dale, A. M., Cichon, S., Boks, M. P., Matarin, M., Penninx, B. W. J. H., Calhoun, V. D., Chakravarty, M. M., Marquand, A., Macare, C., Masouleh, S. K., Oosterlaan, J., Amouyel, P., Hegenscheid, K., Rotter, J. I., Schork, A. J., Liewald, D. C. M., De Zubicaray, G. I., Wong, T. Y., Shen, L., Sämann, P. G., Brodaty, H., Roffman, J. L., De Geus, E. J. C., Tsolaki, M., Erk, S., Van Eijk, K. R., Cavalleri, G. L., Van der Wee, N. J. A., McIntosh, A. M., Gollub, R. L., Bulayeva, K. B., Bernard, M., Richards, J. S., Himali, J. J., Loeffler, M., Rommelse, N., Hoffmann, W., Westlye, L. T., Valdés Hernández, M. C., Hansell, N. K., Van Erp, T. G. M., Wolf, C., Kwok, J. B. J., Vellas, B., Heinz, A., Olde Loohuis, L. M., Delanty, N., Ho, B.-C., Ching, C. R. K., Shumskaya, E., Singh, B., Hofman, A., Van der Meer, D., Homuth, G., Psaty, B. M., Bastin, M., Montgomery, G. W., Foroud, T. M., Reppermund, S., Hottenga, J.-J., Simmons, A., Meyer-Lindenberg, A., Cahn, W., Whelan, C. D., Van Donkelaar, M. M. J., Yang, Q., Hosten, N., Green, R. C., Thalamuthu, A., Mohnke, S., Hulshoff Pol, H. E., Lin, H., Jack Jr., C. R., Schofield, P. R., Mühleisen, T. W., Maillard, P., Potkin, S. G., Wen, W., Fletcher, E., Toga, A. W., Gruber, O., Huentelman, M., Smith, G. D., Launer, L. J., Nyberg, L., Jönsson, E. G., Crespo-Facorro, B., Koen, N., Greve, D., Uitterlinden, A. G., Weinberger, D. R., Steen, V. M., Fedko, I. O., Groenewold, N. A., Niessen, W. J., Toro, R., Tzourio, C., Longstreth Jr., W. T., Ikram, M. K., Smoller, J. W., Van Tol, M.-J., Sussmann, J. E., Paus, T., Lemaître, H., Schroeter, M. L., Mazoyer, B., Andreassen, O. A., Holsboer, F., Depondt, C., Veltman, D. J., Turner, J. A., Pausova, Z., Schumann, G., Van Rooij, D., Djurovic, S., Deary, I. J., McMahon, K. L., Müller-Myhsok, B., Brouwer, R. M., Soininen, H., Pandolfo, M., Wassink, T. H., Cheung, J. W., Wolfers, T., Martinot, J.-L., Zwiers, M. P., Nauck, M., Melle, I., Martin, N. G., Kanai, R., Westman, E., Kahn, R. S., Sisodiya, S. M., White, T., Saremi, A., Van Bokhoven, H., Brunner, H. G., Völzke, H., Wright, M. J., Van 't Ent, D., Nöthen, M. M., Ophoff, R. A., Buitelaar, J. K., Fernández, G., Sachdev, P. S., Rietschel, M., Van Haren, N. E. M., Fisher, S. E., Beiser, A. S., Francks, C., Saykin, A. J., Mather, K. A., Romanczuk-Seiferth, N., Hartman, C. A., DeStefano, A. L., Heslenfeld, D. J., Weiner, M. W., Walter, H., Hoekstra, P. J., Nyquist, P. A., Franke, B., Bennett, D. A., Grabe, H. J., Johnson, A. D., Chen, C., Van Duijn, C. M., Lopez, O. L., Fornage, M., Wardlaw, J. A., Schmidt, R., DeCarli, C., De Jager, P. L., Villringer, A., Debette, S., Gudnason, V., Medland, S. E., Shulman, J. M., Thompson, P. M., Seshadri, S., & Ikram, M. A. (2019). Genetic architecture of subcortical brain structures in 38,854 individuals worldwide. Nature Genetics, 51, 1624-1636. doi:10.1038/s41588-019-0511-y.

    Abstract

    Subcortical brain structures are integral to motion, consciousness, emotions and learning. We identified common genetic variation related to the volumes of the nucleus accumbens, amygdala, brainstem, caudate nucleus, globus pallidus, putamen and thalamus, using genome-wide association analyses in almost 40,000 individuals from CHARGE, ENIGMA and UK Biobank. We show that variability in subcortical volumes is heritable, and identify 48 significantly associated loci (40 novel at the time of analysis). Annotation of these loci by utilizing gene expression, methylation and neuropathological data identified 199 genes putatively implicated in neurodevelopment, synaptic signaling, axonal transport, apoptosis, inflammation/infection and susceptibility to neurological disorders. This set of genes is significantly enriched for Drosophila orthologs associated with neurodevelopmental phenotypes, suggesting evolutionarily conserved mechanisms. Our findings uncover novel biology and potential drug targets underlying brain development and disease.
  • Savoia, M., Cencioni, C., Mori, M., Atlante, S., Zaccagnini, G., Devanna, P., Di Marcotullio, L., Botta, B., Martelli, F., Zeiher, A. M., Pontecorvi, A., Farsetti, A., Spallotta, F., & Gaetano, C. (2019). P300/CBP-associated factor regulates transcription and function of isocitrate dehydrogenase 2 during muscle differentiation. The FASEB Journal, 33(3), 4107-4123. doi:10.1096/fj.201800788R.

    Abstract

    The epigenetic enzyme p300/CBP-associated factor (PCAF) belongs to the GCN5-related N-acetyltransferase (GNAT) family together with GCN5. Although its transcriptional and post-translational function is well characterized, little is known about its properties as regulator of cell metabolism. Here, we report the mitochondrial localization of PCAF conferred by an 85 aa mitochondrial targeting sequence (MTS) at the N-terminal region of the protein. In mitochondria, one of the PCAF targets is the isocitrate dehydrogenase 2 (IDH2) acetylated at lysine 180. This PCAF-regulated post-translational modification might reduce IDH2 affinity for isocitrate as a result of a conformational shift involving predictively the tyrosine at position 179. Site-directed mutagenesis and functional studies indicate that PCAF regulates IDH2, acting at dual level during myoblast differentiation: at a transcriptional level together with MyoD, and at a post-translational level by direct modification of lysine acetylation in mitochondria. The latter event determines a decrease in IDH2 function with negative consequences on muscle fiber formation in C2C12 cells. Indeed, a MTS-deprived PCAF does not localize into mitochondria, remains enriched into the nucleus, and contributes to a significant increase of muscle-specific gene expression enhancing muscle differentiation. The role of PCAF in mitochondria is a novel finding shedding light on metabolic processes relevant to early muscle precursor differentiation.—Savoia, M., Cencioni, C., Mori, M., Atlante, S., Zaccagnini, G., Devanna, P., Di Marcotullio, L., Botta, B., Martelli, F., Zeiher, A. M., Pontecorvi, A., Farsetti, A., Spallotta, F., Gaetano, C. P300/CBP-associated factor regulates transcription and function of isocitrate dehydrogenase 2 during muscle differentiation.

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  • Schertz, J., & Ernestus, M. (2014). Variability in the pronunciation of non-native English the: Effects of frequency and disfluencies. Corpus Linguistics and Linguistic Theory, 10, 329-345. doi:10.1515/cllt-2014-0024.

    Abstract

    This study examines how lexical frequency and planning problems can predict phonetic variability in the function word ‘the’ in conversational speech produced by non-native speakers of English. We examined 3180 tokens of ‘the’ drawn from English conversations between native speakers of Czech or Norwegian. Using regression models, we investigated the effect of following word frequency and disfluencies on three phonetic parameters: vowel duration, vowel quality, and consonant quality. Overall, the non-native speakers showed variation that is very similar to the variation displayed by native speakers of English. Like native speakers, Czech speakers showed an effect of frequency on vowel durations, which were shorter in more frequent word sequences. Both groups of speakers showed an effect of frequency on consonant quality: the substitution of another consonant for /ð/ occurred more often in the context of more frequent words. The speakers in this study also showed a native-like allophonic distinction in vowel quality, in which /ði/ occurs more often before vowels and /ðə/ before consonants. Vowel durations were longer in the presence of following disfluencies, again mirroring patterns in native speakers, and the consonant quality was more likely to be the target /ð/ before disfluencies, as opposed to a different consonant. The fact that non-native speakers show native-like sensitivity to lexical frequency and disfluencies suggests that these effects are consequences of a general, non-language-specific production mechanism governing language planning. On the other hand, the non-native speakers in this study did not show native-like patterns of vowel quality in the presence of disfluencies, suggesting that the pattern attested in native speakers of English may result from language-specific processes separate from the general production mechanisms
  • Schijven, D., Geuze, E., Vinkers, C. H., Pulit, S. L., Schür, R. R., Malgaz, M., Bekema, E., Medic, J., van der Kust, K. E., Veldink, J. H., Boks, M. P., Vermetten, E., & Luykx, J. J. (2019). Multivariate genome-wide analysis of stress-related quantitative phenotypes. European Neuropsychopharmacology, 29(12), 1354-1364. doi:10.1016/j.euroneuro.2019.09.012.

    Abstract

    Exposure to traumatic stress increases the odds of developing a broad range of psychiatric conditions. Genetic studies targeting multiple stress-related quantitative phenotypes may shed light on mechanisms underlying vulnerability to psychopathology in the aftermath of stressful events. We applied a multivariate genome-wide association study (GWAS) to a unique military cohort (N = 583) in which we measured biochemical and behavioral phenotypes. The availability of pre- and post-deployment measurements allowed to capture changes in these phenotypes in response to stress. For genome-wide significant loci, we performed functional annotation, phenome-wide analysis and quasi-replication in PTSD case-control GWASs. We discovered one genetic variant reaching genome-wide significant association, surviving permutation and sensitivity analyses (rs10100651, p = 9.9 × 10−9). Functional annotation prioritized the genes INTS8 and TP53INP1. A phenome-wide scan revealed a significant association of these same genes with sleeping problems, hypertension and subjective well-being. Finally, a targeted lookup revealed nominally significant association of rs10100651 in a PTSD case-control GWAS in the UK Biobank (p = 0.02). We provide comprehensive evidence from multiple resources hinting at a role of the highlighted genetic variant in the human stress response, marking the power of multivariate genome-wide analysis of quantitative measures in stress research. Future genetic and functional studies can target this locus to further assess its effects on stress mediation and its possible role in psychopathology or resilience.

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  • Schijven, D., Sousa, V. C., Roelofs, J., Olivier, B., & Olivier, J. D. A. (2014). Serotonin 1A receptors and sexual behavior in a genetic model of depression. Pharmacology, Biochemistry and Behavior, 121, 82-87. doi:10.1016/j.pbb.2013.12.012.

    Abstract

    The Flinder Sensitive Line (FSL) is a rat strain that displays distinct behavioral and neurochemical features of major depression. Chronic selective serotonin reuptake inhibitors (SSRIs) are able to reverse these symptoms in FSL rats. It is well known that several abnormalities in the serotonergic system have been found in FSL rats, including increased 5-HT brain tissue levels and reduced 5-HT synthesis. SSRIs are known to exert (part of) their effects by desensitization of the 5-HT1A receptor and FSL rats appear to have lower 5-HT1A receptor densities compared with Flinder Resistant Line (FRL) rats. We therefore studied the sensitivity of this receptor on the sexual behavior performance in both FRL and FSL rats. First, basal sexual performance was studied after saline treatment followed by treatment of two different doses of the 5-HT1A receptor agonist ±8-OH-DPAT. Finally we measured the effect of a 5-HT1A receptor antagonist to check for specificity of the 5-HT1A receptor activation. Our results show that FSL rats have higher ejaculation frequencies compared with FRL rats which do not fit with a more depressive-like phenotype. Moreover FRL rats are more sensitive to effects of ±8-OH-DPAT upon EL and IF than FSL rats. The blunted response of FSL rats to the effects of ±8-OH-DPAT may be due to lower densities of 5-HT1A receptors.
  • Schiller, N. O. (1998). The effect of visually masked syllable primes on the naming latencies of words and pictures. Journal of Memory and Language, 39, 484-507. doi:10.1006/jmla.1998.2577.

    Abstract

    To investigate the role of the syllable in Dutch speech production, five experiments were carried out to examine the effect of visually masked syllable primes on the naming latencies for written words and pictures. Targets had clear syllable boundaries and began with a CV syllable (e.g., ka.no) or a CVC syllable (e.g., kak.tus), or had ambiguous syllable boundaries and began with a CV[C] syllable (e.g., ka[pp]er). In the syllable match condition, bisyllabic Dutch nouns or verbs were preceded by primes that were identical to the target’s first syllable. In the syllable mismatch condition, the prime was either shorter or longer than the target’s first syllable. A neutral condition was also included. None of the experiments showed a syllable priming effect. Instead, all related primes facilitated the naming of the targets. It is concluded that the syllable does not play a role in the process of phonological encoding in Dutch. Because the amount of facilitation increased with increasing overlap between prime and target, the priming effect is accounted for by a segmental overlap hypothesis.
  • Schoffelen, J.-M., Oostenveld, R., Lam, N. H. L., Udden, J., Hulten, A., & Hagoort, P. (2019). A 204-subject multimodal neuroimaging dataset to study language processing. Scientific Data, 6(1): 17. doi:10.1038/s41597-019-0020-y.

    Abstract

    This dataset, colloquially known as the Mother Of Unification Studies (MOUS) dataset, contains multimodal neuroimaging data that has been acquired from 204 healthy human subjects. The neuroimaging protocol consisted of magnetic resonance imaging (MRI) to derive information at high spatial resolution about brain anatomy and structural connections, and functional data during task, and at rest. In addition, magnetoencephalography (MEG) was used to obtain high temporal resolution electrophysiological measurements during task, and at rest. All subjects performed a language task, during which they processed linguistic utterances that either consisted of normal or scrambled sentences. Half of the subjects were reading the stimuli, the other half listened to the stimuli. The resting state measurements consisted of 5 minutes eyes-open for the MEG and 7 minutes eyes-closed for fMRI. The neuroimaging data, as well as the information about the experimental events are shared according to the Brain Imaging Data Structure (BIDS) format. This unprecedented neuroimaging language data collection allows for the investigation of various aspects of the neurobiological correlates of language.
  • Schoot, L., Menenti, L., Hagoort, P., & Segaert, K. (2014). A little more conversation - The influence of communicative context on syntactic priming in brain and behavior. Frontiers in Psychology, 5: 208. doi:10.3389/fpsyg.2014.00208.

    Abstract

    We report on an fMRI syntactic priming experiment in which we measure brain activity for participants who communicate with another participant outside the scanner. We investigated whether syntactic processing during overt language production and comprehension is influenced by having a (shared) goal to communicate. Although theory suggests this is true, the nature of this influence remains unclear. Two hypotheses are tested: i. syntactic priming effects (fMRI and RT) are stronger for participants in the communicative context than for participants doing the same experiment in a non-communicative context, and ii. syntactic priming magnitude (RT) is correlated with the syntactic priming magnitude of the speaker’s communicative partner. Results showed that across conditions, participants were faster to produce sentences with repeated syntax, relative to novel syntax. This behavioral result converged with the fMRI data: we found repetition suppression effects in the left insula extending into left inferior frontal gyrus (BA 47/45), left middle temporal gyrus (BA 21), left inferior parietal cortex (BA 40), left precentral gyrus (BA 6), bilateral precuneus (BA 7), bilateral supplementary motor cortex (BA 32/8) and right insula (BA 47). We did not find support for the first hypothesis: having a communicative intention does not increase the magnitude of syntactic priming effects (either in the brain or in behavior) per se. We did find support for the second hypothesis: if speaker A is strongly/weakly primed by speaker B, then speaker B is primed by speaker A to a similar extent. We conclude that syntactic processing is influenced by being in a communicative context, and that the nature of this influence is bi-directional: speakers are influenced by each other.
  • Schoot, L., Hagoort, P., & Segaert, K. (2019). Stronger syntactic alignment in the presence of an interlocutor. Frontiers in Psychology, 10: 685. doi:10.3389/fpsyg.2019.00685.

    Abstract

    Speakers are influenced by the linguistic context: hearing one syntactic alternative leads to an increased chance that the speaker will repeat this structure in the subsequent utterance (i.e., syntactic priming, or structural persistence). Top-down influences, such as whether a conversation partner (or, interlocutor) is present, may modulate the degree to which syntactic priming occurs. In the current study, we indeed show that the magnitude of syntactic alignment increases when speakers are interacting with an interlocutor as opposed to doing the experiment alone. The structural persistence effect for passive sentences is stronger in the presence of an interlocutor than when no interlocutor is present (i.e., when the participant is primed by a recording). We did not find evidence, however, that a speaker’s syntactic priming magnitude is influenced by the degree of their conversation partner’s priming magnitude. Together, these results support a mediated account of syntactic priming, in which syntactic choices are not only affected by preceding linguistic input, but also by top-down influences, such as the speakers’ communicative intent.
  • Schreiweis, C., Bornschein, U., Burguière, E., Kerimoglu, C., Schreiter, S., Dannemann, M., Goyal, S., Rea, E., French, C. A., Puliyadi, R., Groszer, M., Fisher, S. E., Mundry, R., Winter, C., Hevers, W., Pääbo, S., Enard, W., & Graybiel, A. M. (2014). Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance. Proceedings of the National Academy of Sciences of the United States of America, 111, 14253-14258. doi:10.1073/pnas.1414542111.

    Abstract

    The acquisition of language and speech is uniquely human, but how genetic changes might have adapted the nervous system to this capacity is not well understood. Two human-specific amino acid substitutions in the transcription factor forkhead box P2 (FOXP2) are outstanding mechanistic candidates, as they could have been positively selected during human evolution and as FOXP2 is the sole gene to date firmly linked to speech and language development. When these two substitutions are introduced into the endogenous Foxp2 gene of mice (Foxp2hum), cortico-basal ganglia circuits are specifically affected. Here we demonstrate marked effects of this humanization of Foxp2 on learning and striatal neuroplasticity. Foxp2hum/hum mice learn stimulus–response associations faster than their WT littermates in situations in which declarative (i.e., place-based) and procedural (i.e., response-based) forms of learning could compete during transitions toward proceduralization of action sequences. Striatal districts known to be differently related to these two modes of learning are affected differently in the Foxp2hum/hum mice, as judged by measures of dopamine levels, gene expression patterns, and synaptic plasticity, including an NMDA receptor-dependent form of long-term depression. These findings raise the possibility that the humanized Foxp2 phenotype reflects a different tuning of corticostriatal systems involved in declarative and procedural learning, a capacity potentially contributing to adapting the human brain for speech and language acquisition.

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  • Schubotz, L., Ozyurek, A., & Holler, J. (2019). Age-related differences in multimodal recipient design: Younger, but not older adults, adapt speech and co-speech gestures to common ground. Language, Cognition and Neuroscience, 34(2), 254-271. doi:10.1080/23273798.2018.1527377.

    Abstract

    Speakers can adapt their speech and co-speech gestures based on knowledge shared with an addressee (common ground-based recipient design). Here, we investigate whether these adaptations are modulated by the speaker’s age and cognitive abilities. Younger and older participants narrated six short comic stories to a same-aged addressee. Half of each story was known to both participants, the other half only to the speaker. The two age groups did not differ in terms of the number of words and narrative events mentioned per narration, or in terms of gesture frequency, gesture rate, or percentage of events expressed multimodally. However, only the younger participants reduced the amount of verbal and gestural information when narrating mutually known as opposed to novel story content. Age-related differences in cognitive abilities did not predict these differences in common ground-based recipient design. The older participants’ communicative behaviour may therefore also reflect differences in social or pragmatic goals.

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    plcp_a_1527377_sm4510.pdf
  • Schuhmann, T., Kemmerer, S. K., Duecker, F., De Graaf, T. A., Ten Oever, S., Weerd, P. D., & Sack, A. T. (2019). Left parietal tACS at alpha frequency induces a shift of visuospatial attention. PLoS One, 14(11): e0217729. doi:10.1371/journal.pone.0217729.

    Abstract

    Background

    Voluntary shifts of visuospatial attention are associated with a lateralization of parieto-occipital alpha power (7-13Hz), i.e. higher power in the hemisphere ipsilateral and lower power contralateral to the locus of attention. Recent noninvasive neuromodulation studies demonstrated that alpha power can be experimentally increased using transcranial alternating current stimulation (tACS).
    Objective/Hypothesis

    We hypothesized that tACS at alpha frequency over the left parietal cortex induces shifts of attention to the left hemifield. However, spatial attention shifts not only occur voluntarily (endogenous/ top-down), but also stimulus-driven (exogenous/ bottom-up). To study the task-specificity of the potential effects of tACS on attentional processes, we administered three conceptually different spatial attention tasks.
    Methods

    36 healthy volunteers were recruited from an academic environment. In two separate sessions, we applied either high-density tACS at 10Hz, or sham tACS, for 35–40 minutes to their left parietal cortex. We systematically compared performance on endogenous attention, exogenous attention, and stimulus detection tasks.
    Results

    In the endogenous attention task, a greater leftward bias in reaction times was induced during left parietal 10Hz tACS as compared to sham. There were no stimulation effects in either the exogenous attention or the stimulus detection task.
    Conclusion

    The study demonstrates that high-density tACS at 10Hz can be used to modulate visuospatial attention performance. The tACS effect is task-specific, indicating that not all forms of attention are equally susceptible to the stimulation.

    Additional information

    relevant data
  • Schür, R. R., Schijven, D., Boks, M. P., Rutten, B. P., Stein, M. B., Veldink, J. H., Joëls, M., Geuze, E., Vermetten, E., Luykx, J. J., & Vinkers, C. H. (2019). The effect of genetic vulnerability and military deployment on the development of post-traumatic stress disorder and depressive symptoms. European Neuropsychopharmacology, 29(3), 405-415. doi:10.1016/j.euroneuro.2018.12.009.

    Abstract

    Exposure to trauma strongly increases the risk to develop stress-related psychopathology, such as post-traumatic stress disorder (PTSD) or major depressive disorder (MDD). In addition, liability to develop these moderately heritable disorders is partly determined by common genetic variance, which is starting to be uncovered by genome-wide association studies (GWASs). However, it is currently unknown to what extent genetic vulnerability and trauma interact. We investigated whether genetic risk based on summary statistics of large GWASs for PTSD and MDD predisposed individuals to report an increase in MDD and PTSD symptoms in a prospective military cohort (N = 516) at five time points after deployment to Afghanistan: one month, six months and one, two and five years. Linear regression was used to analyze the contribution of polygenic risk scores (PRSs, at multiple p-value thresholds) and their interaction with deployment-related trauma to the development of PTSD- and depression-related symptoms. We found no main effects of PRSs nor evidence for interactions with trauma on the development of PTSD or depressive symptoms at any of the time points in the five years after military deployment. Our results based on a unique long-term follow-up of a deployed military cohort suggest limited validity of current PTSD and MDD polygenic risk scores, albeit in the presence of minimal severe psychopathology in the target cohort. Even though the predictive value of PRSs will likely benefit from larger sample sizes in discovery and target datasets, progress will probably also depend on (endo)phenotype refinement that in turn will reduce etiological heterogeneity.
  • Scurry, A. N., Vercillo, T., Nicholson, A., Webster, M., & Jiang, F. (2019). Aging impairs temporal sensitivity, but not perceptual synchrony, across modalities. Multisensory Research, 32(8), 671-692. doi:10.1163/22134808-20191343.

    Abstract

    Encoding the temporal properties of external signals that comprise multimodal events is a major factor guiding everyday experience. However, during the natural aging process, impairments to sensory processing can profoundly affect multimodal temporal perception. Various mechanisms can contribute to temporal perception, and thus it is imperative to understand how each can be affected by age. In the current study, using three different temporal order judgement tasks (unisensory, multisensory, and sensorimotor), we investigated the effects of age on two separate temporal processes: synchronization and integration of multiple signals. These two processes rely on different aspects of temporal information, either the temporal alignment of processed signals or the integration/segregation of signals arising from different modalities, respectively. Results showed that the ability to integrate/segregate multiple signals decreased with age regardless of the task, and that the magnitude of such impairment correlated across tasks, suggesting a widespread mechanism affected by age. In contrast, perceptual synchrony remained stable with age, revealing a distinct intact mechanism. Overall, results from this study suggest that aging has differential effects on temporal processing, and general impairments with aging may impact global temporal sensitivity while context-dependent processes remain unaffected.

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  • Segaert, K., Weber, K., Cladder-Micus, M., & Hagoort, P. (2014). The influence of verb-bound syntactic preferences on the processing of syntactic structures. Journal of Experimental Psychology: Learning, Memory, and Cognition, 40(5), 1448-1460. doi:10.1037/a0036796.

    Abstract

    Speakers sometimes repeat syntactic structures across sentences, a phenomenon called syntactic priming. We investigated the influence of verb-bound syntactic preferences on syntactic priming effects in response choices and response latencies for German ditransitive sentences. In the response choices we found inverse preference effects: There were stronger syntactic priming effects for primes in the less preferred structure, given the syntactic preference of the prime verb. In the response latencies we found positive preference effects: There were stronger syntactic priming effects for primes in the more preferred structure, given the syntactic preference of the prime verb. These findings provide further support for the idea that syntactic processing is lexically guided.
  • Senft, G. (1998). Body and mind in the Trobriand Islands. Ethos, 26, 73-104. doi:10.1525/eth.1998.26.1.73.

    Abstract

    This article discusses how the Trobriand Islanders speak about body and mind. It addresses the following questions: do the linguistic datafit into theories about lexical universals of body-part terminology? Can we make inferences about the Trobrianders' conceptualization of psychological and physical states on the basis of these data? If a Trobriand Islander sees these idioms as external manifestations of inner states, then can we interpret them as a kind of ethnopsychological theory about the body and its role for emotions, knowledge, thought, memory, and so on? Can these idioms be understood as representation of Trobriand ethnopsychological theory?
  • Senft, G. (1988). A grammar of Manam by Frantisek Lichtenberk [Book review]. Language and linguistics in Melanesia, 18, 169-173.
  • Senft, G. (1995). Crime and custom auf den Trobriand-Inseln: Der Fall Tokurasi. Anthropos, 90, 17-25.
  • Senft, G. (1994). Ein Vorschlag, wie man standardisiert Daten zum Thema 'Sprache, Kognition und Konzepte des Raumes' in verschiedenen Kulturen erheben kann. Linguistische Berichte, 154, 413-429.
  • Senft, G. (1998). [Review of the book Anthropological linguistics: An introduction by William A. Foley]. Linguistics, 36, 995-1001.
  • Senft, G. (1988). [Review of the book Functional syntax: Anaphora, discourse and empathy by Susumu Kuno]. Journal of Pragmatics, 12, 396-399. doi:10.1016/0378-2166(88)90040-9.
  • Senft, G. (1994). [Review of the book Language, culture and society: An introduction by Zdenek Salzmann]. Man, 29, 756-757.
  • Senft, G. (2000). [Review of the book Language, identity, and marginality in Indonesia: The changing nature of ritual speech on the island of Sumba by Joel C. Kuipers]. Linguistics, 38, 435-441. doi:10.1515/ling.38.2.435.
  • Senft, G. (1994). Grammaticalisation of body-part terms in Kilivila. Language and Linguistics in Melanesia, 25, 98-99.
  • Senft, G. (1995). Notes from the field: Ain't misbehavin'? Trobriand pragmatics and the field researcher's opportunity to put his (or her) foot in it. Oceanic Linguistics, 34, 211-226.
  • Senft, G. (1994). Spatial reference in Kilivila: The Tinkertoy Matching Games - A case study. Language and Linguistics in Melanesia, 25, 55-93.
  • Senft, G. (1995). Sprache, Kognition und Konzepte des Raums in verschiedenen Kulturen. Kognitionswissenschaft, 4, 166-170.
  • Senft, G. (1994). These 'Procrustean' feelings: Some of my problems in describing Kilivila. Semaian, 11, 86-105.
  • Seuren, P. A. M. (2000). Bewustzijn en taal. Splijtstof, 28(4), 111-123.
  • Seuren, P. A. M. (1994). [Review of the Dictionary of St. Lucian Creole, part 1: Kweyol- English', part 2: English-Kweyol compiled by Jones E. Mondesir and ed. by Lawrence D. Carrington]. Linguistics, 32(1), 157-158. doi:10.1515/ling.1991.29.4.719.
  • Seuren, P. A. M. (1998). [Review of the book Adverbial subordination; A typology and history of adverbial subordinators based on European languages by Bernd Kortmann]. Cognitive Linguistics, 9(3), 317-319. doi:10.1515/cogl.1998.9.3.315.
  • Seuren, P. A. M. (1988). [Review of the book Pidgin and Creole linguistics by P. Mühlhäusler]. Studies in Language, 12(2), 504-513.
  • Seuren, P. A. M. (1998). [Review of the book The Dutch pendulum: Linguistics in the Netherlands 1740-1900 by Jan Noordegraaf]. Bulletin of the Henry Sweet Society, 31, 46-50.
  • Seuren, P. A. M. (1988). [Review of the Collins Cobuild English Language Dictionary (Collins Birmingham University International Language Database)]. Journal of Semantics, 6, 169-174. doi:10.1093/jos/6.1.169.
  • Seuren, P. A. M., & Jaspers, D. (2014). Logico-cognitive structure in the lexicon. Language, 90(3), 607-643. doi:10.1353/lan.2014.0058.

    Abstract

    This study is a prolegomenon to a formal theory of the natural growth of conceptual and lexical fields. Negation, in the various forms in which it occurs in language, is found to be a powerful indicator. Other than in standard logic, natural language negation selects its complement within universes of discourse that are, for practical and functional reasons, restricted in various ways and to different degrees. It is hypothesized that a system of cognitive principles drives recursive processes of universe restriction, which in turn affects logical relations within the restricted universes. This approach provides a new perspective in which to view the well-known clashes between standard logic and natural logical intuitions. Lexicalization in language, especially the morphological incorporation of negation, is limited to highly restricted universes, which explains, for example, why a dog can be said not to be a Catholic, but also not to be a non-Catholic. Cognition is taken to restrict the universe of discourse to contrary pairs, splitting up one or both of the contraries into further subuniverses as a result of further cognitive activity. It is shown how a logically sound square of opposition , expanded to a hexagon (Jacoby 1950, 1960, Sesmat 1951, Blanché 1952, 1953, 1966), is generated by a hierarchy of universe restrictions, defining the notion ‘natural’ for logical systems. The logical hexagon contains two additional vertices, one for ‘some but not all’ (the Y-type) and one for ‘either all or none’ (the U-type), and incorporates both the classic square and the Hamiltonian triangle of contraries . Some is thus considered semantically ambiguous, representing two distinct quantifiers. The pragmaticist claim that the language system contains only the standard logical ‘some perhaps all’ and that the ‘some but not all’ meaning is pragmatically derived from the use of the system is rejected. Four principles are proposed according to which negation selects a complement from the subuniverses at hand. On the basis of these principles and of the logico-cognitive system proposed, the well-known nonlexicalization not only of *nall and *nand but also of many other nonlogical cases found throughout the lexicons of languages is analyzed and explained
  • Seuren, P. A. M. (1995). Notes on the history and the syntax of Mauritian Creole. Linguistics, 33, 531-577. doi:10.1515/ling.1995.33.3.531.
  • Seuren, P. A. M. (1998). Obituary. Herman Christiaan Wekker 1943–1997. Journal of Pidgin and Creole Languages, 13(1), 159-162.
  • Seuren, P. A. M. (1988). Presupposition and negation. Journal of Semantics, 6(3/4), 175-226. doi:10.1093/jos/6.1.175.

    Abstract

    This paper is an attempt to show that given the available observations on the behaviour of negation and presuppositions there is no simpler explanation than to assume that natural language has two distinct negation operators, the minimal negation which preserves presuppositions and the radical negation which does not. The three-valued logic emerging from this distinction, and especially its model-theory, are discussed in detail. It is, however, stressed that the logic itself is only epiphenomenal on the structures and processes involved in the interpretation of sentences. Horn (1985) brings new observations to bear, related with metalinguistic uses of negation, and proposes a “pragmatic” ambiguity in negation to the effect that in descriptive (or “straight”) use negation is the classical bivalent operator, whereas in metalinguistic use it is non-truthfunctional but only pragmatic. Van der Sandt (to appear) accepts Horn's observations but proposes a different solution: he proposes an ambiguity in the argument clause of the negation operator (which, for him, too, is classical and bivalent), according to whether the negation takes only the strictly asserted proposition or covers also the presuppositions, the (scalar) implicatures and other implications (in particular of style and register) of the sentence expressing that proposition. These theories are discussed at some length. The three-valued analysis is defended on the basis of partly new observations, which do not seem to fit either Horn's or Van der Sandt's solution. It is then placed in the context of incremental discourse semantics, where both negations are seen to do the job of keeping increments out of the discourse domain, though each does so in its own specific way. The metalinguistic character of the radical negation is accounted for in terms of the incremental apparatus. The metalinguistic use of negation in denials of implicatures or implications of style and register is regarded as a particular form of minimal negation, where the negation denies not the proposition itself but the appropriateness of the use of an expression in it. This appropriateness negation is truth-functional and not pragmatic, but it applies to a particular, independently motivated, analysis of the argument clause. The ambiguity of negation in natural language is different from the ordinary type of ambiguity found in the lexicon. Normally, lexical ambiguities are idiosyncratic, highly contingent, and unpredictable from language to language. In the case of negation, however, the two meanings are closely related, both truth-conditionally and incrementally. Moreover, the mechanism of discourse incrementation automatically selects the right meaning. These properties are taken to provide a sufficient basis for discarding the, otherwise valid, objection that negation is unlikely to be ambiguous because no known language makes a lexical distinction between the two readings.
  • Seuren, P. A. M. (2000). Presupposition, negation and trivalence. Journal of Linguistics, 36(2), 261-297.
  • Seuren, P. A. M. (2014). The cognitive ontogenesis of predicate logid. Notre Dame Journal of Formal Logic, 55, 499-532. doi:10.1215/00294527-2798718.

    Abstract

    Since Aristotle and the Stoa, there has been a clash, worsened by modern predicate logic, between logically defined operator meanings and natural intuitions. Pragmatics has tried to neutralize the clash by an appeal to the Gricean conversational maxims. The present study argues that the pragmatic attempt has been unsuccessful. The “softness” of the Gricean explanation fails to do justice to the robustness of the intuitions concerned, leaving the relation between the principles evoked and the observed facts opaque. Moreover, there are cases where the Gricean maxims fail to apply. A more adequate solution consists in the devising of a sound natural logic, part of the innate cognitive equipment of mankind. This account has proved successful in conjunction with a postulated cognitive mechanism in virtue of which the universe of discourse (Un) is stepwise and recursively restricted, so that the negation selects different complements according to the degree of restrictedness of Un. This mechanism explains not only the discrepancies between natural logical intuitions and known logical systems; it also accounts for certain systematic lexicalization gaps in the languages of the world. Finally, it is shown how stepwise restriction of Un produces the ontogenesis of natural predicate logic, while at the same time resolving the intuitive clashes with established logical systems that the Gricean maxims sought to explain
  • Seuren, P. A. M. (1994). Soaps and serials. Journal of Pidgin and Creole Languages, 9(1), 131-149. doi:10.1075/jpcl.9.1.18seu.
  • Seyfeddinipur, M., Ameka, F., Bolton, L., Blumtritt, J., Carpenter, B., Cruz, H., Drude, S., Epps, P. L., Ferreira, V., Galucio, A. V., Hellwig, B., Hinte, O., Holton, G., Jung, D., Buddeberg, I. K., Krifka, M., Kung, S., Monroig, M., Neba, A. N., Nordhoff, S. and 10 moreSeyfeddinipur, M., Ameka, F., Bolton, L., Blumtritt, J., Carpenter, B., Cruz, H., Drude, S., Epps, P. L., Ferreira, V., Galucio, A. V., Hellwig, B., Hinte, O., Holton, G., Jung, D., Buddeberg, I. K., Krifka, M., Kung, S., Monroig, M., Neba, A. N., Nordhoff, S., Pakendorf, B., Von Prince, K., Rau, F., Rice, K., Riessler, M., Szoelloesi Brenig, V., Thieberger, N., Trilsbeek, P., Van der Voort, H., & Woodbury, T. (2019). Public access to research data in language documentation: Challenges and possible strategies. Language Documentation and Conservation, 13, 545-563. Retrieved from http://hdl.handle.net/10125/24901.

    Abstract

    The Open Access Movement promotes free and unfettered access to research publications and, increasingly, to the primary data which underly those publications. As the field of documentary linguistics seeks to record and preserve culturally and linguistically relevant materials, the question of how openly accessible these materials should be becomes increasingly important. This paper aims to guide researchers and other stakeholders in finding an appropriate balance between accessibility and confidentiality of data, addressing community questions and legal, institutional, and intellectual issues that pose challenges to accessible data.
  • Seymour, R. A., Rippon, G., Goordin-Williams, G., Schoffelen, J.-M., & Kessler, K. (2019). Dysregulated oscillatory connectivity in thevisual system in autism spectrum disorder. Brain, 142(10), 3294-3305. doi:10.1093/brain/awz214.

    Abstract

    Autism spectrum disorder is increasingly associated with atypical perceptual and sensory symptoms. Here we explore the hypothesis
    that aberrant sensory processing in autism spectrum disorder could be linked to atypical intra- (local) and interregional (global)
    brain connectivity. To elucidate oscillatory dynamics and connectivity in the visual domain we used magnetoencephalography and
    a simple visual grating paradigm with a group of 18 adolescent autistic participants and 18 typically developing control subjects.
    Both groups showed similar increases in gamma (40–80 Hz) and decreases in alpha (8–13 Hz) frequency power in occipital cortex.
    However, systematic group differences emerged when analysing intra- and interregional connectivity in detail. First, directed
    connectivity was estimated using non-parametric Granger causality between visual areas V1 and V4. Feedforward V1-to-V4
    connectivity, mediated by gamma oscillations, was equivalent between autism spectrum disorder and control groups, but importantly,
    feedback V4-to-V1 connectivity, mediated by alpha (8–13 Hz) oscillations, was significantly reduced in the autism spectrum
    disorder group. This reduction was positively correlated with autistic quotient scores, consistent with an atypical visual hierarchy
    in autism, characterized by reduced top-down modulation of visual input via alpha-band oscillations. Second, at the local level in
    V1, coupling of alpha-phase to gamma amplitude (alpha-gamma phase amplitude coupling) was reduced in the autism spectrum
    disorder group. This implies dysregulated local visual processing, with gamma oscillations decoupled from patterns of wider alphaband
    phase synchrony (i.e. reduced phase amplitude coupling), possibly due to an excitation-inhibition imbalance. More generally,
    these results are in agreement with predictive coding accounts of neurotypical perception and indicate that visual processes in
    autism are less modulated by contextual feedback information.
  • Sha, Z., Wager, T. D., Mechelli, A., & He, Y. (2019). Common Dysfunction of Large-Scale Neurocognitive Networks Across Psychiatric Disorders. Biological Psychiatry, 85(5), 379-388. doi:10.1016/j.biopsych.2018.11.011.

    Abstract

    Background Cognitive dysfunction is one of the most prominent characteristics of psychiatric disorders. At present, the neural correlates of cognitive dysfunction across psychiatric disorders are poorly understood. The aim of this study was to investigate functional connectivity and structural perturbations across psychiatric diagnoses in three neurocognitive networks of interest, including the default-mode (DMN), the frontoparietal (FPN) and the salience network (SN). Methods We performed meta-analyses of resting-state functional MRI (R-fMRI) whole-brain seed-based functional connectivity in 8,298 patients (involving 8 disorders) and 8,165 healthy controls and a voxel-based morphometry analysis of structural MRI data in 14,027 patients (involving 8 disorders) and healthy 14,504 controls. To aid the interpretation of the results, we examined neurocognitive function in 776 healthy participants from the Human Connectome Project. Results We found that the three neurocognitive networks of interest were characterized by shared alterations of functional connectivity architecture across psychiatric disorders. More specifically, hypoconnectivity was expressed between the DMN and ventral SN and between the SN and FPN, whereas hyperconnectivity was evident between the DMN and FPN and between the DMN and dorsal SN. This pattern of network alterations was associated with gray matter reductions in patients, and was localized in regions that subserve general cognitive performance. Conclusions This study is the first to provide meta-analytic evidence of common alterations of functional connectivity within and between neurocognitive networks. The findings suggest a shared mechanism of network interactions that may associate with the generalized cognitive deficits observed in psychiatric disorders.

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  • Sha, L., Wu, X., Yao, Y., Wen, B., Feng, J., Sha, Z., Wang, X., Xing, X., Dou, W., Jin, L., Li, W., Wang, N., Shen, Y., Wang, J., Wu, L., & Xu, Q. (2014). Notch Signaling Activation Promotes Seizure Activity in Temporal Lobe Epilepsy. Molecular Neurobiology, 49(2), 633-644.

    Abstract

    Notch signaling in the nervous system is often regarded as a developmental pathway. However, recent studies have suggested that Notch is associated with neuronal discharges. Here, focusing on temporal lobe epilepsy, we found that Notch signaling was activated in the kainic acid (KA)-induced epilepsy model and in human epileptogenic tissues. Using an acute model of seizures, we showed that DAPT, an inhibitor of Notch, inhibited ictal activity. In contrast, pretreatment with exogenous Jagged1 to elevate Notch signaling before KA application had proconvulsant effects. In vivo, we demonstrated that the impacts of activated Notch signaling on seizures can in part be attributed to the regulatory role of Notch signaling on excitatory synaptic activity in CA1 pyramidal neurons. In vitro, we found that DAPT treatment impaired synaptic vesicle endocytosis in cultured hippocampal neurons. Taken together, our findings suggest a correlation between aberrant Notch signaling and epileptic seizures. Notch signaling is up-regulated in response to seizure activity, and its activation further promotes neuronal excitation of CA1 pyramidal neurons in acute seizures.
  • Shao, Z., Van Paridon, J., Poletiek, F. H., & Meyer, A. S. (2019). Effects of phrase and word frequencies in noun phrase production. Journal of Experimental Psychology: Learning, Memory, and Cognition, 45(1), 147-165. doi:10.1037/xlm0000570.

    Abstract

    There is mounting evidence that the ease of producing and understanding language depends not only on the frequencies of individual words but also on the frequencies of word combinations. However, in two picture description experiments, Janssen and Barber (2012) found that French and Spanish speakers' speech onset latencies for short phrases depended exclusively on the frequencies of the phrases but not on the frequencies of the individual words. They suggested that speakers retrieved phrase-sized units from the mental lexicon. In the present study, we examined whether the time required to plan complex noun phrases in Dutch would likewise depend only on phrase frequencies. Participants described line drawings in phrases such as rode schoen [red shoe] (Experiments 1 and 2) or de rode schoen [the red shoe] (Experiment 3). Replicating Janssen and Barber's findings, utterance onset latencies depended on the frequencies of the phrases but, deviating from their findings, also depended on the frequencies of the adjectives in adjective-noun phrases and the frequencies of the nouns in determiner-adjective-noun phrases. We conclude that individual word frequencies and phrase frequencies both affect the time needed to produce noun phrases and discuss how these findings may be captured in models of the mental lexicon and of phrase production
  • Shao, Z., Roelofs, A., Acheson, D. J., & Meyer, A. S. (2014). Electrophysiological evidence that inhibition supports lexical selection in picture naming. Brain Research, 1586, 130-142. doi:10.1016/j.brainres.2014.07.009.

    Abstract

    We investigated the neural basis of inhibitory control during lexical selection. Participants overtly named pictures while response times (RTs) and event-related brain potentials (ERPs) were recorded. The difficulty of lexical selection was manipulated by using object and action pictures with high name agreement (few response candidates) versus low name agreement (many response candidates). To assess the involvement of inhibition, we conducted delta plot analyses of naming RTs and examined the N2 component of the ERP. We found longer mean naming RTs and a larger N2 amplitude in the low relative to the high name agreement condition. For action naming we found a negative correlation between the slopes of the slowest delta segment and the difference in N2 amplitude between the low and high name agreement conditions. The converging behavioral and electrophysiological evidence suggests that selective inhibition is engaged to reduce competition during lexical selection in picture naming.
  • Shao, Z., Roelofs, A., & Meyer, A. S. (2014). Predicting naming latencies for action pictures: Dutch norms. Behavior Research Methods, 46, 274-283. doi:10.3758/s13428-013-0358-6.

    Abstract

    The present study provides Dutch norms for age of acquisition, familiarity, imageability, image agreement, visual complexity, word frequency, and word length (in syllables) for 124 line drawings of actions. Ratings were obtained from 117 Dutch participants. Word frequency was determined on the basis of the SUBTLEX-NL corpus (Keuleers, Brysbaert, & New, Behavior Research Methods, 42, 643–650, 2010). For 104 of the pictures, naming latencies and name agreement were determined in a separate naming experiment with 74 native speakers of Dutch. The Dutch norms closely corresponded to the norms for British English. Multiple regression analysis showed that age of acquisition, imageability, image agreement, visual complexity, and name agreement were significant predictors of naming latencies, whereas word frequency and word length were not. Combined with the results of a principal-component analysis, these findings suggest that variables influencing the processes of conceptual preparation and lexical selection affect latencies more strongly than do variables influencing word-form encoding.

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  • Shao, Z., Janse, E., Visser, K., & Meyer, A. S. (2014). What do verbal fluency tasks measure? Predictors of verbal fluency performance in older adults. Frontiers in Psychology, 5: 772. doi:10.3389/fpsyg.2014.00772.

    Abstract

    This study examined the contributions of verbal ability and executive control to verbal fluency performance in older adults (n=82). Verbal fluency was assessed in letter and category fluency tasks, and performance on these tasks was related to indicators of vocabulary size, lexical access speed, updating, and inhibition ability. In regression analyses the number of words produced in both fluency tasks was predicted by updating ability, and the speed of the first response was predicted by vocabulary size and, for category fluency only, lexical access speed. These results highlight the hybrid character of both fluency tasks, which may limit their usefulness for research and clinical purposes.
  • Sharoh, D., Van Mourik, T., Bains, L. J., Segaert, K., Weber, K., Hagoort, P., & Norris, D. (2019). Laminar specific fMRI reveals directed interactions in distributed networks during language processing. Proceedings of the National Academy of Sciences of the United States of America, 116(42), 21185-21190. doi:10.1073/pnas.1907858116.

    Abstract

    Interactions between top-down and bottom-up information streams are integral to brain function but challenging to measure noninvasively. Laminar resolution, functional MRI (lfMRI) is sensitive to depth-dependent properties of the blood oxygen level-dependent (BOLD) response, which can be potentially related to top-down and bottom-up signal contributions. In this work, we used lfMRI to dissociate the top-down and bottom-up signal contributions to the left occipitotemporal sulcus (LOTS) during word reading. We further demonstrate that laminar resolution measurements could be used to identify condition-specific distributed networks on the basis of whole-brain connectivity patterns specific to the depth-dependent BOLD signal. The networks corresponded to top-down and bottom-up signal pathways targeting the LOTS during word reading. We show that reading increased the top-down BOLD signal observed in the deep layers of the LOTS and that this signal uniquely related to the BOLD response in other language-critical regions. These results demonstrate that lfMRI can reveal important patterns of activation that are obscured at standard resolution. In addition to differences in activation strength as a function of depth, we also show meaningful differences in the interaction between signals originating from different depths both within a region and with the rest of the brain. We thus show that lfMRI allows the noninvasive measurement of directed interaction between brain regions and is capable of resolving different connectivity patterns at submillimeter resolution, something previously considered to be exclusively in the domain of invasive recordings.
  • Shayan, S., Ozturk, O., Bowerman, M., & Majid, A. (2014). Spatial metaphor in language can promote the development of cross-modal mappings in children. Developmental Science, 17(4), 636-643. doi:10.1111/desc.12157.

    Abstract

    Pitch is often described metaphorically: for example, Farsi and Turkish speakers use a ‘thickness’ metaphor (low sounds are ‘thick’ and high sounds are ‘thin’), while German and English speakers use a height metaphor (‘low’, ‘high’). This study examines how child and adult speakers of Farsi, Turkish, and German map pitch and thickness using a cross-modal association task. All groups, except for German children, performed significantly better than chance. German-speaking adults’ success suggests the pitch-to-thickness association can be learned by experience. But the fact that German children were at chance indicates that this learning takes time. Intriguingly, Farsi and Turkish children's performance suggests that learning cross-modal associations can be boosted through experience with consistent metaphorical mappings in the input language
  • Shipley, J. M., Birdsall, S., Clark, J., Crew, J., Gill, S., Linehan, M., Gnarra, J., Fisher, S. E., Craig, I. W., & Cooper, C. S. (1995). Mapping the X chromosome breakpoint in two papillary renal cell carcinoma cell lines with a t(X;1)(p11.2;q21.2) and the first report of a female case. Cytogenetic and genome research, 71(3), 280-284. doi:DOI: 10.1159/000134127.

    Abstract

    A t(X;1)(p11.2;q21.2) has been reported in cases of papillary renal cell tumors arising in males. In this study two cell lines derived from this tumor type have been used to indicate the breakpoint region on the X chromosome. Both cell lines have the translocation in addition to other rearrangements and one is derived from the first female case to be reported with the t(X;1)(p11.2;q21.2). Fluorescence in situ hybridization (FISH) has been used to position YACs belonging to contigs in the Xp11.2 region relative to the breakpoint. When considered together with detailed mapping information from the Xp11.2 region the position of the breakpoint in both cell lines was suggested as follows: Xpter-->Xp11.23-OATL1-GATA1-WAS-TFE3-SY P-t(X;1)-DXS255-CLCN5-DXS146-OATL2- Xp11.22-->Xcen. The breakpoint was determined to lie in an uncloned region between SYP and a YAC called FTDM/1 which extends 1 Mb distal to DXS255. These results are contrary to the conclusion from previous FISH studies that the breakpoint was near the OATL2 locus, but are consistent with, and considerably refine, the position that had been established by molecular analysis.
  • Shkaravska, O., & Van Eekelen, M. (2014). Univariate polynomial solutions of algebraic difference equations. Journal of Symbolic Computation, 60, 15-28. doi:10.1016/j.jsc.2013.10.010.

    Abstract

    Contrary to linear difference equations, there is no general theory of difference equations of the form G(P(x−τ1),…,P(x−τs))+G0(x)=0, with τi∈K, G(x1,…,xs)∈K[x1,…,xs] of total degree D⩾2 and G0(x)∈K[x], where K is a field of characteristic zero. This article is concerned with the following problem: given τi, G and G0, find an upper bound on the degree d of a polynomial solution P(x), if it exists. In the presented approach the problem is reduced to constructing a univariate polynomial for which d is a root. The authors formulate a sufficient condition under which such a polynomial exists. Using this condition, they give an effective bound on d, for instance, for all difference equations of the form G(P(x−a),P(x−a−1),P(x−a−2))+G0(x)=0 with quadratic G, and all difference equations of the form G(P(x),P(x−τ))+G0(x)=0 with G having an arbitrary degree.

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