Publications

Displaying 1401 - 1500 of 1553
  • Van Leeuwen, T. M., Den Ouden, H. E. M., & Hagoort, P. (2011). Effective connectivity determines the nature of subjective experience in grapheme-color synesthesia. Journal of Neuroscience, 31, 9879-9884. doi:10.1523/JNEUROSCI.0569-11.2011.

    Abstract

    Synesthesia provides an elegant model to investigate neural mechanisms underlying individual differences in subjective experience in humans. In grapheme–color synesthesia, written letters induce color sensations, accompanied by activation of color area V4. Competing hypotheses suggest that enhanced V4 activity during synesthesia is either induced by direct bottom-up cross-activation from grapheme processing areas within the fusiform gyrus, or indirectly via higher-order parietal areas. Synesthetes differ in the way synesthetic color is perceived: “projector” synesthetes experience color externally colocalized with a presented grapheme, whereas “associators” report an internally evoked association. Using dynamic causal modeling for fMRI, we show that V4 cross-activation during synesthesia was induced via a bottom-up pathway (within fusiform gyrus) in projector synesthetes, but via a top-down pathway (via parietal lobe) in associators. These findings show how altered coupling within the same network of active regions leads to differences in subjective experience. Our findings reconcile the two most influential cross-activation accounts of synesthesia.
  • Van de Geer, J. P., & Levelt, W. J. M. (1963). Detection of visual patterns disturbed by noise: An exploratory study. Quarterly Journal of Experimental Psychology, 15, 192-204. doi:10.1080/17470216308416324.

    Abstract

    An introductory study of the perception of stochastically specified events is reported. The initial problem was to determine whether the perceiver can split visual input data of this kind into random and determined components. The inability of subjects to do so with the stimulus material used (a filmlike sequence of dot patterns), led to the more general question of how subjects code this kind of visual material. To meet the difficulty of defining the subjects' responses, two experiments were designed. In both, patterns were presented as a rapid sequence of dots on a screen. The patterns were more or less disturbed by “noise,” i.e. the dots did not appear exactly at their proper places. In the first experiment the response was a rating on a semantic scale, in the second an identification from among a set of alternative patterns. The results of these experiments give some insight in the coding systems adopted by the subjects. First, noise appears to be detrimental to pattern recognition, especially to patterns with little spread. Second, this shows connections with the factors obtained from analysis of the semantic ratings, e.g. easily disturbed patterns show a large drop in the semantic regularity factor, when only a little noise is added.
  • Van Valin Jr., R. D. (1987). Aspects of the interaction of syntax and pragmatics: Discourse coreference mechanisms and the typology of grammatical systems. In M. Bertuccelli Papi, & J. Verschueren (Eds.), The pragmatic perspective: Selected papers from the 1985 International Pragmatics Conference (pp. 513-531). Amsterdam: Benjamins.
  • Van Leeuwen, T. (2011). How one can see what is not there: Neural mechanisms of grapheme-colour synasthesia. PhD Thesis, Radboud University Nijmegen, Nijmegen.

    Abstract

    People with grapheme-colour synaesthesia experience colour for letters of the alphabet or digits; A can be red and B can be green. How can it be, that people automatically see a colour where only black letters are printed on the paper? With brain scans (fMRI) I showed that (black) letters activate the colour area of the brain (V4) and also a brain area that is important for combining different types of information (SPL). We found that the location where synaesthetes subjectively experience their colours is related to the order in which these brain areas become active. Some synaesthetes see their colour ‘projected onto the letter’, similar to real colour experiences, and in this case colour area V4 becomes active first. If the colours appear like a strong association without a fixed location in space, SPL becomes active first, similar to what happens for normal memories. In a last experiment we showed that in synaesthetes, attention is captured by real colour very strongly, stronger than for control participants. Perhaps this attention effect of colour can explain how letters and colours become coupled in synaesthetes.
  • Van de Meerendonk, N., Indefrey, P., Chwilla, D. J., & Kolk, H. H. (2011). Monitoring in language perception: Electrophysiological and hemodynamic responses to spelling violations. Neuroimage, 54, 2350-2363. doi:10.1016/j.neuroimage.2010.10.022.

    Abstract

    The monitoring theory of language perception proposes that competing representations that are caused by strong expectancy violations can trigger a conflict which elicits reprocessing of the input to check for possible processing errors. This monitoring process is thought to be reflected by the P600 component in the EEG. The present study further investigated this monitoring process by comparing syntactic and spelling violations in an EEG and an fMRI experiment. To assess the effect of conflict strength, misspellings were embedded in sentences that were weakly or strongly predictive of a critical word. In support of the monitoring theory, syntactic and spelling violations elicited similarly distributed P600 effects. Furthermore, the P600 effect was larger to misspellings in the strongly compared to the weakly predictive sentences. The fMRI results showed that both syntactic and spelling violations increased activation in the left inferior frontal gyrus (lIFG), while only the misspellings activated additional areas. Conflict strength did not affect the hemodynamic response to spelling violations. These results extend the idea that the lIFG is involved in implementing cognitive control in the presence of representational conflicts in general to the processing of errors in language perception.
  • Van Gijn, R. (2011). Multi-verb constructions in Yurakaré. In A. Y. Aikhenvald, & P. C. Muysken (Eds.), Multi-verb constructions: A view from the Americas (pp. 255-282). Leiden: Brill.
  • Van Wijk, C., & Kempen, G. (1981). Het effect van sociale klasse en gesprekssituatie op het gebruik van connectieven in mondeling en schriftelijk taalgebruik. Tijdschrift voor Taalbeheersing, 3, 203-209.

    Abstract

    Van den Broeck (1977, 1980) heeft een pragmatische interpretatie voorgesteld voor de verschillende wijzen waarop leden van hogere en lagere sociaal-economische klassen hun taaluitingen syntaktisch struktureren. Ter ondersteuning hiervan presenteerde hij gegevens m.b.t. gemiddelde zinscomplexiteit bij sprekers uit twee sociaal- conomische klassen in formele en informele gesprekssituaties. Het in dit artikel gerapporteerde onderzoek slaagt er niet in van den Broeck's uitkomsten te repliceren. Waarschijnlijk berusten ze op een contaminatie van gesprekssituatie met taalkeuze (standaardtaal vs. lokaal dialekt). Mede op basis van de nieuwe gegevens wordt i.p.v. de pragmatische interpretatie een vaardigheidsinterpretatie voorgesteld. T.g.v. vooropleiding en beroep beschikken leden van verschillende sociaal- economische klassen over uiteenlopende vaardigheidsniveaus in verhalend (narrative) en verklarend (expository) taalgebruik. Dit uit zich in het gebruik van connectieven: funktiewoorden die logischsemantische relaties tussen proposities uitdrukken.
  • Van Gijn, R., & Gipper, S. (2009). Irrealis in Yurakaré and other languages: On the cross-linguistic consistency of an elusive category. In L. Hogeweg, H. De Hoop, & A. Malchukov (Eds.), Cross-linguistic semantics of tense, aspect, and modality (pp. 155-178). Amsterdam: Benjamins.

    Abstract

    The linguistic category of irrealis does not show stable semantics across languages. This makes it difficult to formulate general statements about this category, and it has led some researchers to reject irrealis as a cross-linguistically valid category. In this paper we look at the semantics of the irrealis category of Yurakaré, an unclassified language spoken in central Bolivia, and compare it to irrealis semantics of a number of other languages. Languages differ with respect to the subcategories they subsume under the heading of irrealis. The variable subcategories are future tense, imperatives, negatives, and habitual aspect. We argue that the cross-linguistic variation is not random, and can be stated in terms of an implicational scale.
  • Van der Linden, M. (2011). Experience-based cortical plasticity in object category representation. PhD Thesis, Radboud University Nijmegen, Nijmegen.

    Abstract

    Marieke van der Linden investigated the neural mechanisms underlying category formation in the human brain. The research in her thesis provides novel insights in how the brain learns, stores, and uses category knowledge, enabling humans to become skilled in categorization. The studies reveal the neural mechanisms through which perceptual as well as conceptual category knowledge is created and shaped by experience. The results clearly show that neuronal sensitivity to object features is affected by categorization training. These findings fill in a missing link between electrophysiological recordings from monkey cortex demonstrating learning-induced sharpening of neuronal selectivity and brain imaging data showing category-specific representations in the human brain. Moreover, she showed that it is specifically the features of an object that are relevant for its categorization that induce selectivity in neuronal populations. Category-learning requires collaboration between many different brain areas. Together these can be seen as the neural correlates of the key points of categorization: discrimination and generalization. The occipitotemporal cortex represents those characteristic features of objects that define its category. The narrowly shape-tuned properties of this area enable fine-grained discrimination of perceptually similar objects. In addition, the superior temporal sulcus forms associations between members or properties (i.e. sound and shape) of a category. This allows the generalization of perceptually different but conceptually similar objects. Last but not least is the prefrontal cortex which is involved in coding behaviourally-relevant category information and thus enables the explicit retrieval of category membership.
  • Van Geenhoven, V. (1998). On the Argument Structure of some Noun Incorporating Verbs in West Greenlandic. In M. Butt, & W. Geuder (Eds.), The Projection of Arguments - Lexical and Compositional Factors (pp. 225-263). Stanford, CA, USA: CSLI Publications.
  • Van de Ven, M., & Gussenhoven, C. (2011). On the timing of the final rise in Dutch falling-rising intonation contours. Journal of Phonetics, 39, 225-236. doi:10.1016/j.wocn.2011.01.006.

    Abstract

    A corpus of Dutch falling-rising intonation contours with early nuclear accent was elicited from nine speakers with a view to establishing the extent to which the low F0 target immediately preceding the final rise, was attracted by a post-nuclear stressed syllable (PNS) in either of the last two words or by Second Occurrence Contrastive Focus (SOCF) on either of these words. We found a small effect of foot type, which we interpret as due to a rhythmic 'trochaic enhancement' effect. The results show that neither PNS nor SOCF influences the location of the low F0 target, which appears consistently to be timed with reference to the utterance end. It is speculated that there are two ways in which postnuclear tones can be timed. The first is by means of a phonological association with a post-nuclear stressed syllable, as in Athenian Greek and Roermond Dutch. The second is by a fixed distance from the utterance end or from the target of an adjacent tone. Accordingly, two phonological mechanisms are defended, association and edge alignment, such that all tones edge-align, but only some associate. Specifically, no evidence was found for a third situation that can be envisaged, in which a post-nuclear tone is gradiently attracted to a post-nuclear stress.

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  • Van Valin Jr., R. D. (2009). Privileged syntactic arguments, pivots and controllers. In L. Guerrero, S. Ibáñez, & V. A. Belloro (Eds.), Studies in role and reference grammar (pp. 45-68). Mexico: Universidad Nacional Autónoma de México.
  • Van Gijn, R. (2011). Pronominal affixes, the best of both worlds: The case of Yurakaré. Transactions of the Philological Society, 109(1), 41-58. doi:10.1111/j.1467-968X.2011.01249.x.

    Abstract

    I thank the speakers of Yurakaré who have taught me their language for sharing their knowledge with me. I would furthermore like to thank Grev Corbett, Michael Cysouw, and an anonymous reviewer for commenting on earlier drafts of this paper. All remaining errors are mine. The research reported in this paper was made possible by grants from Prof. Pieter Muysken’s Spinoza project Lexicon & Syntax, the University of Surrey, the DoBeS foundation, and the Netherlands Organization for Scientific Research, for which I am grateful. Pronominal affixes in polysynthetic languages have an ambiguous status in the sense that they have characteristics normally associated with free pronouns as well as characteristics associated with agreement markers. This situation arises because pronominal affixes represent intermediate stages in a diachronic development from independent pronouns to agreement markers. Because this diachronic change is not abrupt, pronominal affixes can show different characteristics from language to language. By presenting an in-depth discussion of the pronominal affixes of Yurakaré, an unclassified language from Bolivia, I argue that these so-called intermediate stages as typically attested in polysynthetic languages actually represent economical systems that combine advantages of agreement markers and of free pronouns. In terms of diachronic development, such ‘intermediate’ systems, being functionally well-adapted, appear to be rather stable, and it can even be reinforced by subsequent diachronic developments.
  • Van Putten, S. (2009). Talking about motion in Avatime. Master Thesis, Leiden University.
  • Van Valin Jr., R. D. (1998). The acquisition of WH-questions and the mechanisms of language acquisition. In M. Tomasello (Ed.), The new psychology of language: Cognitive and functional approaches to language structure (pp. 221-249). Mahwah, New Jersey: Erlbaum.
  • Van de Geer, J. P., Levelt, W. J. M., & Plomp, R. (1962). The connotation of musical consonance. Acta Psychologica, 20, 308-319.

    Abstract

    As a preliminary to further research on musical consonance an explanatory investigation was made on the different modes of judgment of musical intervals. This was done by way of a semantic differential. Subjects rated 23 intervals against 10 scales. In a factor analysis three factors appeared: pitch, evaluation and fusion. The relation between these factors and some physical characteristics has been investigated. The scale consonant-dissonant showed to be purely evaluative (in opposition to Stumpf's theory). This evaluative connotation is not in accordance with the musicological meaning of consonance. Suggestions to account for this difference have been given.
  • Van Tiel, B., Deliens, G., Geelhand, P., Murillo Oosterwijk, A., & Kissine, M. (2021). Strategic deception in adults with autism spectrum disorder. Journal of Autism and Developmental Disorders, 51, 255-266. doi:10.1007/s10803-020-04525-0.

    Abstract

    Autism Spectrum Disorder (ASD) is often associated with impaired perspective-taking skills. Deception is an important indicator of perspective-taking, and therefore may be thought to pose difficulties to people with ASD (e.g., Baron-Cohen in J Child Psychol Psychiatry 3:1141–1155, 1992). To test this hypothesis, we asked participants with and without ASD to play a computerised deception game. We found that participants with ASD were equally likely—and in complex cases of deception even more likely—to deceive and detect deception, and learned deception at a faster rate. However, participants with ASD initially deceived less frequently, and were slower at detecting deception. These results suggest that people with ASD readily engage in deception but may do so through conscious and effortful reasoning about other people’s perspectiv
  • Van Gijn, R. (2011). Subjects and objects: A semantic account of Yurakaré argument structure. International Journal of American Linguistics, 77, 595-621. doi:10.1086/662158.

    Abstract

    Yurakaré (unclassified, central Bolivia) marks core arguments on the verb by means of pronominal affixes. Subjects are suffixed, objects are prefixed. There are six types of head-marked objects in Yurakaré, each with its own morphosyntactic and semantic properties. Distributional patterns suggest that the six objects can be divided into two larger groups reminiscent of the typologically recognized direct vs. indirect object distinction. This paper looks at the interaction of this complex system of participant marking and verbal semantics. By investigating the participant-marking patterns of nine verb classes (four representing a gradual decrease of patienthood of the P participant, five a gradual decrease of agentivity of the A participant), I come to the conclusion that grammatical roles in Yurakaré can be defined semantically, and case frames are to a high degree determined by verbal semantics.
  • Van Gijn, R., Haude, K., & Muysken, P. (Eds.). (2011). Subordination in native South American languages. Amsterdam: Benjamins.

    Abstract

    In terms of its linguistic and cultural make-up, the continent of South America provides linguists and anthropologists with a complex puzzle of language diversity. The continent teems with small language families and isolates, and even languages spoken in adjacent areas can be typologically vastly different from each other. This volume intends to provide a taste of the linguistic diversity found in South America within the area of clause subordination. The potential variety in the strategies that languages can use to encode subordinate events is enormous, yet there are clearly dominant patterns to be discerned: switch reference marking, clause chaining, nominalization, and verb serialization. The book also contributes to the continuing debate on the nature of syntactic complexity, as evidenced in subordination.
  • Van Gijn, R., Haude, K., & Muysken, P. (2011). Subordination in South America: An overview. In R. Van Gijn, K. Haude, & P. Muysken (Eds.), Subordination in native South-American languages (pp. 1-24). Amsterdam: Benjamins.
  • Van Paridon, J., & Thompson, B. (2021). subs2vec: Word embeddings from subtitles in 55 languages. Behavior Research Methods, 53(2), 629-655. doi:10.3758/s13428-020-01406-3.

    Abstract

    This paper introduces a novel collection of word embeddings, numerical representations of lexical semantics, in 55 languages, trained on a large corpus of pseudo-conversational speech transcriptions from television shows and movies. The embeddings were trained on the OpenSubtitles corpus using the fastText implementation of the skipgram algorithm. Performance comparable with (and in some cases exceeding) embeddings trained on non-conversational (Wikipedia) text is reported on standard benchmark evaluation datasets. A novel evaluation method of particular relevance to psycholinguists is also introduced: prediction of experimental lexical norms in multiple languages. The models, as well as code for reproducing the models and all analyses reported in this paper (implemented as a user-friendly Python package), are freely available at: https://github.com/jvparidon/subs2vec.

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  • Van Leeuwen, E. J. C., Zimmerman, E., & Davila Ross, M. (2011). Responding to inequities: Gorillas try to maintain their competitive advantage during play fights. Biology Letters, 7(1), 39-42. doi:10.1098/rsbl.2010.0482.

    Abstract

    Humans respond to unfair situations in various ways. Experimental research has revealed that non-human species also respond to unequal situ- ations in the form of inequity aversions when they have the disadvantage. The current study focused on play fights in gorillas to explore for the first time, to our knowledge, if/how non-human species respond to inequities in natural social settings. Hitting causes a naturally occurring inequity among individuals and here it was specifically assessed how the hitters and their partners engaged in play chases that followed the hitting. The results of this work showed that the hitters significantly more often moved first to run away immediately after the encounter than their partners. These findings provide evidence that non-human species respond to inequities by trying to maintain their competitive advantages. We conclude that non-human pri- mates, like humans, may show different responses to inequities and that they may modify them depending on if they have the advantage or the disadvantage.
  • Van Valin Jr., R. D. (2009). Role and reference grammar. In F. Brisard, J.-O. Östman, & J. Verschueren (Eds.), Grammar, meaning, and pragmatics (pp. 239-249). Amsterdam: Benjamins.
  • Van Gijn, R. (2011). Semantic and grammatical integration in Yurakaré subordination. In R. Van Gijn, K. Haude, & P. Muysken (Eds.), Subordination in native South-American languages (pp. 169-192). Amsterdam: Benjamins.

    Abstract

    Yurakaré (unclassified, central Bolivia) has five subordination strategies (on the basis of a morphosyntactic definition). In this paper I argue that the use of these different strategies is conditioned by the degree of conceptual synthesis of the two events, relating to temporal integration and participant integration. The most integrated events are characterized by shared time reference; morphosyntactically they are serial verb constructions, with syntactically fused predicates. The other constructions are characterized by less grammatical integration, which correlates either with a low degree of temporal integration of the dependent predicate and the main predicate, or with participant discontinuity.
  • Van de Ven, M., Tucker, B. V., & Ernestus, M. (2011). Semantic context effects in the comprehension of reduced pronunciation variants. Memory & Cognition, 39, 1301-1316. doi:10.3758/s13421-011-0103-2.

    Abstract

    Listeners require context to understand the highly reduced words that occur in casual speech. The present study reports four auditory lexical decision experiments in which the role of semantic context in the comprehension of reduced versus unreduced speech was investigated. Experiments 1 and 2 showed semantic priming for combinations of unreduced, but not reduced, primes and low-frequency targets. In Experiment 3, we crossed the reduction of the prime with the reduction of the target. Results showed no semantic priming from reduced primes, regardless of the reduction of the targets. Finally, Experiment 4 showed that reduced and unreduced primes facilitate upcoming low-frequency related words equally if the interstimulus interval is extended. These results suggest that semantically related words need more time to be recognized after reduced primes, but once reduced primes have been fully (semantically) processed, these primes can facilitate the recognition of upcoming words as well as do unreduced primes.
  • Van de Ven, M., Tucker, B. V., & Ernestus, M. (2009). Semantic context effects in the recognition of acoustically unreduced and reduced words. In Proceedings of the 10th Annual Conference of the International Speech Communication Association (pp. 1867-1870). Causal Productions Pty Ltd.

    Abstract

    Listeners require context to understand the casual pronunciation variants of words that are typical of spontaneous speech (Ernestus et al., 2002). The present study reports two auditory lexical decision experiments, investigating listeners' use of semantic contextual information in the comprehension of unreduced and reduced words. We found a strong semantic priming effect for low frequency unreduced words, whereas there was no such effect for reduced words. Word frequency was facilitatory for all words. These results show that semantic context is relevant especially for the comprehension of unreduced words, which is unexpected given the listener driven explanation of reduction in spontaneous speech.
  • Van Valin Jr., R. D. (1987). Pragmatics, island phenomena, and linguistic competence. In A. M. Farley, P. T. Farley, & K.-E. McCullough (Eds.), CLS 22. Papers from the parasession on pragmatics and grammatical theory (pp. 223-233). Chicago Linguistic Society.
  • van Hell, J. G., & Witteman, M. J. (2009). The neurocognition of switching between languages: A review of electrophysiological studies. In L. Isurin, D. Winford, & K. de Bot (Eds.), Multidisciplinary approaches to code switching (pp. 53-84). Philadelphia: John Benjamins.

    Abstract

    The seemingly effortless switching between languages and the merging of two languages into a coherent utterance is a hallmark of bilingual language processing, and reveals the flexibility of human speech and skilled cognitive control. That skill appears to be available not only to speakers when they produce language-switched utterances, but also to listeners and readers when presented with mixed language information. In this chapter, we review electrophysiological studies in which Event-Related Potentials (ERPs) are derived from recordings of brain activity to examine the neurocognitive aspects of comprehending and producing mixed language. Topics we discuss include the time course of brain activity associated with language switching between single stimuli and language switching of words embedded in a meaningful sentence context. The majority of ERP studies report that switching between languages incurs neurocognitive costs, but –more interestingly- ERP patterns differ as a function of L2 proficiency and the amount of daily experience with language switching, the direction of switching (switching into L2 is typically associated with higher switching costs than switching into L1), the type of language switching task, and the predictability of the language switch. Finally, we outline some future directions for this relatively new approach to the study of language switching.
  • Van Gijn, R. (2009). The phonology of mixed languages. Journal of Pidgin and Creole Languages, 24(1), 91-117. doi:10.1075/jpcl.24.1.04gij.

    Abstract

    Mixed languages are said to be the result of a process of intertwining (e.g. Bakker & Muysken 1995, Bakker 1997), a regular process in which the grammar of one language is combined with the lexicon of another. However, the outcome of this process differs from language pair to language pair. As far as morphosyntax is concerned, people have discussed these different outcomes and the reasons for them extensively, e.g. Bakker 1997 for Michif, Mous 2003 for Ma’a, Muysken 1997a for Media Lengua and 1997b for Callahuaya. The issue of phonology, however, has not generated a large debate. This paper compares the phonological systems of the mixed languages Media Lengua, Callahuaya, Mednyj Aleut, and Michif. It will be argued that the outcome of the process of intertwining, as far as phonology is concerned, is at least partly determined by the extent to which unmixed phonological domains exist.
  • Van Berkum, J. J. A. (2011). Zonder gevoel geen taal [Inaugural lecture].

    Abstract

    Onderzoek naar taal en communicatie heeft zich in het verleden veel te veel gericht op taal als systeem om berichten te coderen, een soort TCP/IP (netwerkprotocol voor communicatie tussen computers). Dat moet maar eens veranderen, stelt prof. dr. Jos van Berkum, hoogleraar Discourse, Cognitie en Communicatie, in zijn oratie die hij op 30 september zal houden aan de Universiteit Utrecht. Hij pleit voor meer onderzoek naar de sterke verwevenheid van taal en gevoel.
  • Van Geert, E., Ding, R., & Wagemans, J. (2024). A cross-cultural comparison of aesthetic preferences for neatly organized compositions: Native Chinese- versus Native Dutch-speaking samples. Empirical Studies of the Arts. Advance online publication. doi:10.1177/02762374241245917.

    Abstract

    Do aesthetic preferences for images of neatly organized compositions (e.g., images collected on blogs like Things Organized Neatly©) generalize across cultures? In an earlier study, focusing on stimulus and personal properties related to order and complexity, Western participants indicated their preference for one of two simultaneously presented images (100 pairs). In the current study, we compared the data of the native Dutch-speaking participants from this earlier sample (N = 356) to newly collected data from a native Chinese-speaking sample (N = 220). Overall, aesthetic preferences were quite similar across cultures. When relating preferences for each sample to ratings of order, complexity, soothingness, and fascination collected from a Western, mainly Dutch-speaking sample, the results hint at a cross-culturally consistent preference for images that Western participants rate as more ordered, but a cross-culturally diverse relation between preferences and complexity.
  • Van der Werff, J., Ravignani, A., & Jadoul, Y. (2024). thebeat: A Python package for working with rhythms and other temporal sequences. Behavior Research Methods, 56, 3725-3736. doi:10.3758/s13428-023-02334-8.

    Abstract

    thebeat is a Python package for working with temporal sequences and rhythms in the behavioral and cognitive sciences, as well as in bioacoustics. It provides functionality for creating experimental stimuli, and for visualizing and analyzing temporal data. Sequences, sounds, and experimental trials can be generated using single lines of code. thebeat contains functions for calculating common rhythmic measures, such as interval ratios, and for producing plots, such as circular histograms. thebeat saves researchers time when creating experiments, and provides the first steps in collecting widely accepted methods for use in timing research. thebeat is an open-source, on-going, and collaborative project, and can be extended for use in specialized subfields. thebeat integrates easily with the existing Python ecosystem, allowing one to combine our tested code with custom-made scripts. The package was specifically designed to be useful for both skilled and novice programmers. thebeat provides a foundation for working with temporal sequences onto which additional functionality can be built. This combination of specificity and plasticity should facilitate research in multiple research contexts and fields of study.
  • van der Burght, C. L., & Meyer, A. S. (2024). Interindividual variation in weighting prosodic and semantic cues during sentence comprehension – a partial replication of Van der Burght et al. (2021). In Y. Chen, A. Chen, & A. Arvaniti (Eds.), Proceedings of Speech Prosody 2024 (pp. 792-796). doi:10.21437/SpeechProsody.2024-160.

    Abstract

    Contrastive pitch accents can mark sentence elements occupying parallel roles. In “Mary kissed John, not Peter”, a pitch accent on Mary or John cues the implied syntactic role of Peter. Van der Burght, Friederici, Goucha, and Hartwigsen (2021) showed that listeners can build expectations concerning syntactic and semantic properties of upcoming words, derived from pitch accent information they heard previously. To further explore these expectations, we attempted a partial replication of the original German study in Dutch. In the experimental sentences “Yesterday, the police officer arrested the thief, not the inspector/murderer”, a pitch accent on subject or object cued the subject/object role of the ellipsis clause. Contrasting elements were additionally cued by the thematic role typicality of the nouns. Participants listened to sentences in which the ellipsis clause was omitted and selected the most plausible sentence-final noun (presented visually) via button press. Replicating the original study results, listeners based their sentence-final preference on the pitch accent information available in the sentence. However, as in the original study, individual differences between listeners were found, with some following prosodic information and others relying on a structural bias. The results complement the literature on ellipsis resolution and on interindividual variability in cue weighting.
  • Vandeberg, L., Guadalupe, T., & Zwaan, R. A. (2011). How verbs can activate things: Cross-language activation across word classes. Acta Psychologica, 138, 68-73. doi:10.1016/j.actpsy.2011.05.007.

    Abstract

    The present study explored whether language-nonselective access in bilinguals occurs across word classes in a sentence context. Dutch–English bilinguals were auditorily presented with English (L2) sentences while looking at a visual world. The sentences contained interlingual homophones from distinct lexical categories (e.g., the English verb spoke, which overlaps phonologically with the Dutch noun for ghost, spook). Eye movement recordings showed that depictions of referents of the Dutch (L1) nouns attracted more visual attention than unrelated distractor pictures in sentences containing homophones. This finding shows that native language objects are activated during second language verb processing despite the structural information provided by the sentence context. Research highlights We show that native language words are activated during second language sentence processing. We tested this in a visual world setting on homophones with a different word class across languages. Fixations show that processing second language verbs activated native language nouns.
  • Vapnarsky, V., & Le Guen, O. (2011). The guardians of space: Understanding ecological and historical relations of the contemporary Yucatec Mayas to their landscape. In C. Isendahl, & B. Liljefors Persson (Eds.), Ecology, Power, and Religion in Maya Landscapes: Proceedings of the 11th European Maya Conference. Acta Mesoamericano. vol. 23. Markt Schwaben: Saurwein.
  • Varola*, M., Verga*, L., Sroka, M., Villanueva, S., Charrier, I., & Ravignani, A. (2021). Can harbor seals (Phoca vitulina) discriminate familiar conspecific calls after long periods of separation? PeerJ, 9: e12431. doi:10.7717/peerj.12431.

    Abstract

    * - indicates joint first authorship -
    The ability to discriminate between familiar and unfamiliar calls may play a key role in pinnipeds’ communication and survival, as in the case of mother-pup interactions. Vocal discrimination abilities have been suggested to be more developed in pinniped species with the highest selective pressure such as the otariids; yet, in some group-living phocids, such as harbor seals (Phoca vitulina), mothers are also able to recognize their pup’s voice. Conspecifics’ vocal recognition in pups has never been investigated; however, the repeated interaction occurring between pups within the breeding season suggests that long-term vocal discrimination may occur. Here we explored this hypothesis by presenting three rehabilitated seal pups with playbacks of vocalizations from unfamiliar or familiar pups. It is uncommon for seals to come into rehabilitation for a second time in their lifespan, and this study took advantage of these rare cases. A simple visual inspection of the data plots seemed to show more reactions, and of longer duration, in response to familiar as compared to unfamiliar playbacks in two out of three pups. However, statistical analyses revealed no significant difference between the experimental conditions. We also found no significant asymmetry in orientation (left vs. right) towards familiar and unfamiliar sounds. While statistics do not support the hypothesis of an established ability to discriminate familiar vocalizations from unfamiliar ones in harbor seal pups, further investigations with a larger sample size are needed to confirm or refute this hypothesis.

    Additional information

    dataset
  • Vartiainen, J., Aggujaro, S., Lehtonen, M., Hulten, A., Laine, M., & Salmelin, R. (2009). Neural dynamics of reading morphologically complex words. NeuroImage, 47, 2064-2072. doi:10.1016/j.neuroimage.2009.06.002.

    Abstract

    Despite considerable research interest, it is still an open issue as to how morphologically complex words such as “car+s” are represented and processed in the brain. We studied the neural correlates of the processing of inflected nouns in the morphologically rich Finnish language. Previous behavioral studies in Finnish have yielded a robust inflectional processing cost, i.e., inflected words are harder to recognize than otherwise matched morphologically simple words. Theoretically this effect could stem either from decomposition of inflected words into a stem and a suffix at input level and/or from subsequent recombination at the semantic–syntactic level to arrive at an interpretation of the word. To shed light on this issue, we used magnetoencephalography to reveal the time course and localization of neural effects of morphological structure and frequency of written words. Ten subjects silently read high- and low-frequency Finnish words in inflected and monomorphemic form. Morphological complexity was accompanied by stronger and longerlasting activation of the left superior temporal cortex from 200 ms onwards. Earlier effects of morphology were not found, supporting the view that the well-established behavioral processing cost for inflected words stems from the semantic–syntactic level rather than from early decomposition. Since the effect of morphology was detected throughout the range of word frequencies employed, the majority of inflected Finnish words appears to be represented in decomposed form and only very high-frequency inflected words may acquire full-form representations.
  • Vega-Mendoza, M., Pickering, M. J., & Nieuwland, M. S. (2021). Concurrent use of animacy and event-knowledge during comprehension: Evidence from event-related potentials. Neuropsychologia, 152: 107724. doi:10.1016/j.neuropsychologia.2020.107724.

    Abstract

    In two ERP experiments, we investigated whether readers prioritize animacy over real-world event-knowledge during sentence comprehension. We used the paradigm of Paczynski and Kuperberg (2012), who argued that animacy is prioritized based on the observations that the ‘related anomaly effect’ (reduced N400s for context-related anomalous words compared to unrelated words) does not occur for animacy violations, and that animacy violations but not relatedness violations elicit P600 effects. Participants read passive sentences with plausible agents (e.g., The prescription for the mental disorder was written by the psychiatrist) or implausible agents that varied in animacy and semantic relatedness (schizophrenic/guard/pill/fence). In Experiment 1 (with a plausibility judgment task), plausible sentences elicited smaller N400s relative to all types of implausible sentences. Crucially, animate words elicited smaller N400s than inanimate words, and related words elicited smaller N400s than unrelated words, but Bayesian analysis revealed substantial evidence against an interaction between animacy and relatedness. Moreover, at the P600 time-window, we observed more positive ERPs for animate than inanimate words and for related than unrelated words at anterior regions. In Experiment 2 (without judgment task), we observed an N400 effect with animacy violations, but no other effects. Taken together, the results of our experiments fail to support a prioritized role of animacy information over real-world event-knowledge, but they support an interactive, constraint-based view on incremental semantic processing.
  • Verdonschot, R. G., Han, J.-I., & Kinoshita, S. (2021). The proximate unit in Korean speech production: Phoneme or syllable? Quarterly Journal of Experimental Psychology, 74, 187-198. doi:10.1177/1747021820950239.

    Abstract

    We investigated the “proximate unit” in Korean, that is, the initial phonological unit selected in speech production by Korean speakers. Previous studies have shown mixed evidence indicating either a phoneme-sized or a syllable-sized unit. We conducted two experiments in which participants named pictures while ignoring superimposed non-words. In English, for this task, when the picture (e.g., dog) and distractor phonology (e.g., dark) initially overlap, typically the picture target is named faster. We used a range of conditions (in Korean) varying from onset overlap to syllabic overlap, and the results indicated an important role for the syllable, but not the phoneme. We suggest that the basic unit used in phonological encoding in Korean is different from Germanic languages such as English and Dutch and also from Japanese and possibly also Chinese. Models dealing with the architecture of language production can use these results when providing a framework suitable for all languages in the world, including Korean.
  • Verdonschot, R. G., La Heij, W., Paolieri, D., Zhang, Q., & Schiller, N. O. (2011). Homophonic context effects when naming Japanese kanji: Evidence for processing costs. Quarterly Journal of Experimental Psychology, 64(9), 1836-1849. doi:10.1080/17470218.2011.585241.

    Abstract

    The current study investigated the effects of phonologically related context pictures on the naming latencies of target words in Japanese and Chinese. Reading bare words in alphabetic languages has been shown to be rather immune to effects of context stimuli, even when these stimuli are presented in advance of the target word (e. g., Glaser & Dungelhoff, 1984; Roelofs, 2003). However, recently, semantic context effects of distractor pictures on the naming latencies of Japanese kanji (but not Chinese hanzi) words have been observed (Verdonschot, La Heij, & Schiller, 2010). In the present study, we further investigated this issue using phonologically related (i.e., homophonic) context pictures when naming target words in either Chinese or Japanese. We found that pronouncing bare nouns in Japanese is sensitive to phonologically related context pictures, whereas this is not the case in Chinese. The difference between these two languages is attributed to processing costs caused by multiple pronunciations for Japanese kanji.
  • Verdonschot, R. G., Kiyama, S., Tamaoka, K., Kinoshita, S., La Heij, W., & Schiller, N. O. (2011). The functional unit of Japanese word naming: Evidence from masked priming. Journal of Experimental Psychology: Learning, Memory, and Cognition, 37(6), 1458-1473. doi:10.1037/a0024491.

    Abstract

    Theories of language production generally describe the segment as the basic unit in phonological encoding (e.g., Dell, 1988; Levelt, Roelofs, & Meyer, 1999). However, there is also evidence that such a unit might be language specific. Chen, Chen, and Dell (2002), for instance, found no effect of single segments when using a preparation paradigm. To shed more light on the functional unit of phonological encoding in Japanese, a language often described as being mora based, we report the results of 4 experiments using word reading tasks and masked priming. Experiment 1 demonstrated using Japanese kana script that primes, which overlapped in the whole mora with target words, sped up word reading latencies but not when just the onset overlapped. Experiments 2 and 3 investigated a possible role of script by using combinations of romaji (Romanized Japanese) and hiragana; again, facilitation effects were found only when the whole mora and not the onset segment overlapped. Experiment 4 distinguished mora priming from syllable priming and revealed that the mora priming effects obtained in the first 3 experiments are also obtained when a mora is part of a syllable. Again, no priming effect was found for single segments. Our findings suggest that the mora and not the segment (phoneme) is the basic functional phonological unit in Japanese language production planning.
  • Verdonschot, R. G. (2011). Word processing in languages using non-alphabetic scripts: The cases of Japanese and Chinese. PhD Thesis, Leiden University, Leiden, The Netherlands.

    Abstract

    This thesis investigates the processing of words written in Japanese kanji and Chinese hànzì, i.e. logographic scripts. Special attention is given to the fact that the majority of Japanese kanji have multiple pronunciations (generally depending on the combination a kanji forms with other characters). First, using masked priming, it is established that upon presentation of a Japanese kanji multiple pronunciations are activated. In subsequent experiments using word naming with context pictures it is concluded that both Chinese hànzì and Japanese kanji are read out loud via a direct route from orthography to phonology. However, only Japanese kanji become susceptible to semantic or phonological context effects as a result of a cost due to the processing of multiple pronunciations. Finally, zooming in on the size of the articulatory planning unit in Japanese it is concluded that the mora as a phonological unit best complies with the observed data pattern and not the phoneme or the syllable
  • Verdonschot, R. G., Van der Wal, J., Lewis, A. G., Knudsen, B., Von Grebmer zu Wolfsthurn, S., Schiller, N. O., & Hagoort, P. (2024). Information structure in Makhuwa: Electrophysiological evidence for a universal processing account. Proceedings of the National Academy of Sciences of the United States of America, 121(30): e2315438121. doi:10.1073/pnas.2315438121.

    Abstract

    There is evidence from both behavior and brain activity that the way information is structured, through the use of focus, can up-regulate processing of focused constituents, likely to give prominence to the relevant aspects of the input. This is hypothesized to be universal, regardless of the different ways in which languages encode focus. In order to test this universalist hypothesis, we need to go beyond the more familiar linguistic strategies for marking focus, such as by means of intonation or specific syntactic structures (e.g., it-clefts). Therefore, in this study, we examine Makhuwa-Enahara, a Bantu language spoken in northern Mozambique, which uniquely marks focus through verbal conjugation. The participants were presented with sentences that consisted of either a semantically anomalous constituent or a semantically nonanomalous constituent. Moreover, focus on this particular constituent could be either present or absent. We observed a consistent pattern: Focused information generated a more negative N400 response than the same information in nonfocus position. This demonstrates that regardless of how focus is marked, its consequence seems to result in an upregulation of processing of information that is in focus.

    Additional information

    supplementary materials
  • Verga, L., & Ravignani, A. (2021). Strange seal sounds: Claps, slaps, and multimodal pinniped rhythms. Frontiers in Ecology and Evolution, 9: 644497. doi:10.3389/fevo.2021.644497.
  • Verga, L., Schwartze, M., Stapert, S., Winkens, I., & Kotz, S. A. (2021). Dysfunctional timing in traumatic brain injury patients: Co-occurrence of cognitive, motor, and perceptual deficits. Frontiers in Psychology, 12: 731898. doi:10.3389/fpsyg.2021.731898.

    Abstract

    Timing is an essential part of human cognition and of everyday life activities, such as walking or holding a conversation. Previous studies showed that traumatic brain injury (TBI) often affects cognitive functions such as processing speed and time-sensitive abilities, causing long-term sequelae as well as daily impairments. However, the existing evidence on timing capacities in TBI is mostly limited to perception and the processing of isolated intervals. It is therefore open whether the observed deficits extend to motor timing and to continuous dynamic tasks that more closely match daily life activities. The current study set out to answer these questions by assessing audio motor timing abilities and their relationship with cognitive functioning in a group of TBI patients (n=15) and healthy matched controls. We employed a comprehensive set of tasks aiming at testing timing abilities across perception and production and from single intervals to continuous auditory sequences. In line with previous research, we report functional impairments in TBI patients concerning cognitive processing speed and perceptual timing. Critically, these deficits extended to motor timing: The ability to adjust to tempo changes in an auditory pacing sequence was impaired in TBI patients, and this motor timing deficit covaried with measures of processing speed. These findings confirm previous evidence on perceptual and cognitive timing deficits resulting from TBI and provide first evidence for comparable deficits in motor behavior. This suggests basic co-occurring perceptual and motor timing impairments that may factor into a wide range of daily activities. Our results thus place TBI into the wider range of pathologies with well-documented timing deficits (such as Parkinson’s disease) and encourage the search for novel timing-based therapeutic interventions (e.g., employing dynamic and/or musical stimuli) with high transfer potential to everyday life activities.

    Additional information

    supplementary material
  • Verhagen, J., & Schimke, S. (2009). Differences or fundamental differences? Zeitschrift für Sprachwissenschaft, 28(1), 97-106. doi:10.1515/ZFSW.2009.011.
  • Verhagen, J. (2009). Finiteness in Dutch as a second language. PhD Thesis, VU University, Amsterdam.
  • Verhagen, J. (2009). Light verbs and the acquisition of finiteness and negation in Dutch as a second language. In C. Dimroth, & P. Jordens (Eds.), Functional categories in learner language (pp. 203-234). Berlin: Mouton de Gruyter.
  • Verhagen, J. (2009). Temporal adverbials, negation and finiteness in Dutch as a second language: A scope-based account. IRAL, 47(2), 209-237. doi:10.1515/iral.2009.009.

    Abstract

    This study investigates the acquisition of post-verbal (temporal) adverbials and post-verbal negation in L2 Dutch. It is based on previous findings for L2 French that post-verbal negation poses less of a problem for L2 learners than post-verbal adverbial placement (Hawkins, Towell, Bazergui, Second Language Research 9: 189-233, 1993; Herschensohn, Minimally raising the verb issue: 325-336, Cascadilla Press, 1998). The current data show that, at first sight, Moroccan and Turkish learners of Dutch also have fewer problems with post-verbal negation than with post-verbal adverbials. However, when a distinction is made between different types of adverbials, it seems that this holds for adverbials of position such as 'today' but not for adverbials of contrast such as 'again'. To account for this difference, it is argued that different types of adverbial occupy different positions in the L2 data for reasons of scope marking. Moreover, the placement of adverbials such as 'again' interacts with the acquisition of finiteness marking (resulting in post-verbal placement), while there is no such interaction between adverbials such as 'today' and finiteness marking.
  • Verhagen, J. (2011). Verb placement in second language acquisition: Experimental evidence for the different behavior of auxiliary and lexical verbs. Applied Psycholinguistics, 32, 821 -858. doi:10.1017/S0142716411000087.

    Abstract

    This study investigates the acquisition of verb placement by Moroccan and Turkish second language (L2) learners of Dutch. Elicited production data corroborate earlier findings from L2 German that learners who do not produce auxiliaries do not raise lexical verbs over negation, whereas learners who produce auxiliaries do. Data from elicited imitation and sentence matching support this pattern and show that learners can have grammatical knowledge of auxiliary placement before they can produce auxiliaries. With lexical verbs, they do not show such knowledge. These results present further evidence for the different behavior of auxiliary and lexical verbs in early stages of L2 acquisition.
  • Verhoef, T., & Ravignani, A. (2021). Melodic universals emerge or are sustained through cultural evolution. Frontiers in Psychology, 12: 668300. doi:10.3389/fpsyg.2021.668300.

    Abstract

    To understand why music is structured the way it is, we need an explanation that accounts for both the universality and variability found in musical traditions. Here we test whether statistical universals that have been identified for melodic structures in music can emerge as a result of cultural adaptation to human biases through iterated learning. We use data from an experiment in which artificial whistled systems, where sounds were produced with a slide whistle, were learned by human participants and transmitted multiple times from person to person. These sets of whistled signals needed to be memorized and recalled and the reproductions of one participant were used as the input set for the next. We tested for the emergence of seven different melodic features, such as discrete pitches, motivic patterns, or phrase repetition, and found some evidence for the presence of most of these statistical universals. We interpret this as promising evidence that, similarly to rhythmic universals, iterated learning experiments can also unearth melodic statistical universals. More, ideally cross-cultural, experiments are nonetheless needed. Simulating the cultural transmission of artificial proto-musical systems can help unravel the origins of universal tendencies in musical structures.
  • Verhoef, E., Grove, J., Shapland, C. Y., Demontis, D., Burgess, S., Rai, D., Børglum, A. D., & St Pourcain, B. (2021). Discordant associations of educational attainment with ASD and ADHD implicate a polygenic form of pleiotropy. Nature Communications, 12: 6534. doi:10.1038/s41467-021-26755-1.

    Abstract

    Autism Spectrum Disorder (ASD) and Attention-Deficit/Hyperactivity Disorder (ADHD) are complex co-occurring neurodevelopmental conditions. Their genetic architectures reveal striking similarities but also differences, including strong, discordant polygenic associations with educational attainment (EA). To study genetic mechanisms that present as ASD-related positive and ADHD-related negative genetic correlations with EA, we carry out multivariable regression analyses using genome-wide summary statistics (N = 10,610–766,345). Our results show that EA-related genetic variation is shared across ASD and ADHD architectures, involving identical marker alleles. However, the polygenic association profile with EA, across shared marker alleles, is discordant for ASD versus ADHD risk, indicating independent effects. At the single-variant level, our results suggest either biological pleiotropy or co-localisation of different risk variants, implicating MIR19A/19B microRNA mechanisms. At the polygenic level, they point to a polygenic form of pleiotropy that contributes to the detectable genome-wide correlation between ASD and ADHD and is consistent with effect cancellation across EA-related regions.

    Additional information

    supplementary information
  • Verhoef, E., Shapland, C. Y., Fisher, S. E., Dale, P. S., & St Pourcain, B. (2021). The developmental origins of genetic factors influencing language and literacy: Associations with early-childhood vocabulary. Journal of Child Psychology and Psychiatry, 62(6), 728-738. doi:10.1111/jcpp.13327.

    Abstract

    Background

    The heritability of language and literacy skills increases from early‐childhood to adolescence. The underlying mechanisms are little understood and may involve (a) the amplification of genetic influences contributing to early language abilities, and/or (b) the emergence of novel genetic factors (innovation). Here, we investigate the developmental origins of genetic factors influencing mid‐childhood/early‐adolescent language and literacy. We evaluate evidence for the amplification of early‐childhood genetic factors for vocabulary, in addition to genetic innovation processes.
    Methods

    Expressive and receptive vocabulary scores at 38 months, thirteen language‐ and literacy‐related abilities and nonverbal cognition (7–13 years) were assessed in unrelated children from the Avon Longitudinal Study of Parents and Children (ALSPAC, Nindividuals ≤ 6,092). We investigated the multivariate genetic architecture underlying early‐childhood expressive and receptive vocabulary, and each of 14 mid‐childhood/early‐adolescent language, literacy or cognitive skills with trivariate structural equation (Cholesky) models as captured by genome‐wide genetic relationship matrices. The individual path coefficients of the resulting structural models were finally meta‐analysed to evaluate evidence for overarching patterns.
    Results

    We observed little support for the emergence of novel genetic sources for language, literacy or cognitive abilities during mid‐childhood or early adolescence. Instead, genetic factors of early‐childhood vocabulary, especially those unique to receptive skills, were amplified and represented the majority of genetic variance underlying many of these later complex skills (≤99%). The most predictive early genetic factor accounted for 29.4%(SE = 12.9%) to 45.1%(SE = 7.6%) of the phenotypic variation in verbal intelligence and literacy skills, but also for 25.7%(SE = 6.4%) in performance intelligence, while explaining only a fraction of the phenotypic variation in receptive vocabulary (3.9%(SE = 1.8%)).
    Conclusions

    Genetic factors contributing to many complex skills during mid‐childhood and early adolescence, including literacy, verbal cognition and nonverbal cognition, originate developmentally in early‐childhood and are captured by receptive vocabulary. This suggests developmental genetic stability and overarching aetiological mechanisms.

    Additional information

    supporting information
  • Verhoef, E., Shapland, C. Y., Fisher, S. E., Dale, P. S., & St Pourcain, B. (2021). The developmental genetic architecture of vocabulary skills during the first three years of life: Capturing emerging associations with later-life reading and cognition. PLoS Genetics, 17(2): e1009144. doi:10.1371/journal.pgen.1009144.

    Abstract

    Individual differences in early-life vocabulary measures are heritable and associated with subsequent reading and cognitive abilities, although the underlying mechanisms are little understood. Here, we (i) investigate the developmental genetic architecture of expressive and receptive vocabulary in early-life and (ii) assess timing of emerging genetic associations with mid-childhood verbal and non-verbal skills. We studied longitudinally assessed early-life vocabulary measures (15–38 months) and later-life verbal and non-verbal skills (7–8 years) in up to 6,524 unrelated children from the population-based Avon Longitudinal Study of Parents and Children (ALSPAC) cohort. We dissected the phenotypic variance of rank-transformed scores into genetic and residual components by fitting multivariate structural equation models to genome-wide genetic-relationship matrices. Our findings show that the genetic architecture of early-life vocabulary involves multiple distinct genetic factors. Two of these genetic factors are developmentally stable and also contribute to genetic variation in mid-childhood skills: One genetic factor emerging with expressive vocabulary at 24 months (path coefficient: 0.32(SE = 0.06)) was also related to later-life reading (path coefficient: 0.25(SE = 0.12)) and verbal intelligence (path coefficient: 0.42(SE = 0.13)), explaining up to 17.9% of the phenotypic variation. A second, independent genetic factor emerging with receptive vocabulary at 38 months (path coefficient: 0.15(SE = 0.07)), was more generally linked to verbal and non-verbal cognitive abilities in mid-childhood (reading path coefficient: 0.57(SE = 0.07); verbal intelligence path coefficient: 0.60(0.10); performance intelligence path coefficient: 0.50(SE = 0.08)), accounting for up to 36.1% of the phenotypic variation and the majority of genetic variance in these later-life traits (≥66.4%). Thus, the genetic foundations of mid-childhood reading and cognitive abilities are diverse. They involve at least two independent genetic factors that emerge at different developmental stages during early language development and may implicate differences in cognitive processes that are already detectable during toddlerhood.

    Additional information

    supporting information
  • Verhoef, E. (2021). Why do we change how we speak? Multivariate genetic analyses of language and related traits across development and disorder. PhD Thesis, Radboud University Nijmegen, Nijmegen.
  • Verhoef, E., Allegrini, A. G., Jansen, P. R., Lange, K., Wang, C. A., Morgan, A. T., Ahluwalia, T. S., Symeonides, C., EAGLE-Working Group, Eising, E., Franken, M.-C., Hypponen, E., Mansell, T., Olislagers, M., Omerovic, E., Rimfeld, K., Schlag, F., Selzam, S., Shapland, C. Y., Tiemeier, H., Whitehouse, A. J. O. Verhoef, E., Allegrini, A. G., Jansen, P. R., Lange, K., Wang, C. A., Morgan, A. T., Ahluwalia, T. S., Symeonides, C., EAGLE-Working Group, Eising, E., Franken, M.-C., Hypponen, E., Mansell, T., Olislagers, M., Omerovic, E., Rimfeld, K., Schlag, F., Selzam, S., Shapland, C. Y., Tiemeier, H., Whitehouse, A. J. O., Saffery, R., Bønnelykke, K., Reilly, S., Pennell, C. E., Wake, M., Cecil, C. A., Plomin, R., Fisher, S. E., & St Pourcain, B. (2024). Genome-wide analyses of vocabulary size in infancy and toddlerhood: Associations with Attention-Deficit/Hyperactivity Disorder and cognition-related traits. Biological Psychiatry, 95(1), 859-869. doi:10.1016/j.biopsych.2023.11.025.

    Abstract

    Background

    The number of words children produce (expressive vocabulary) and understand (receptive vocabulary) changes rapidly during early development, partially due to genetic factors. Here, we performed a meta–genome-wide association study of vocabulary acquisition and investigated polygenic overlap with literacy, cognition, developmental phenotypes, and neurodevelopmental conditions, including attention-deficit/hyperactivity disorder (ADHD).

    Methods

    We studied 37,913 parent-reported vocabulary size measures (English, Dutch, Danish) for 17,298 children of European descent. Meta-analyses were performed for early-phase expressive (infancy, 15–18 months), late-phase expressive (toddlerhood, 24–38 months), and late-phase receptive (toddlerhood, 24–38 months) vocabulary. Subsequently, we estimated single nucleotide polymorphism–based heritability (SNP-h2) and genetic correlations (rg) and modeled underlying factor structures with multivariate models.

    Results

    Early-life vocabulary size was modestly heritable (SNP-h2 = 0.08–0.24). Genetic overlap between infant expressive and toddler receptive vocabulary was negligible (rg = 0.07), although each measure was moderately related to toddler expressive vocabulary (rg = 0.69 and rg = 0.67, respectively), suggesting a multifactorial genetic architecture. Both infant and toddler expressive vocabulary were genetically linked to literacy (e.g., spelling: rg = 0.58 and rg = 0.79, respectively), underlining genetic similarity. However, a genetic association of early-life vocabulary with educational attainment and intelligence emerged only during toddlerhood (e.g., receptive vocabulary and intelligence: rg = 0.36). Increased ADHD risk was genetically associated with larger infant expressive vocabulary (rg = 0.23). Multivariate genetic models in the ALSPAC (Avon Longitudinal Study of Parents and Children) cohort confirmed this finding for ADHD symptoms (e.g., at age 13; rg = 0.54) but showed that the association effect reversed for toddler receptive vocabulary (rg = −0.74), highlighting developmental heterogeneity.

    Conclusions

    The genetic architecture of early-life vocabulary changes during development, shaping polygenic association patterns with later-life ADHD, literacy, and cognition-related traits.
  • Verkerk, A. (2009). A semantic map of secondary predication. In B. Botma, & J. Van Kampen (Eds.), Linguistics in the Netherlands 2009 (pp. 115-126).
  • Vernes, S. C., Kriengwatana, B. P., Beeck, V. C., Fischer, J., Tyack, P. L., Ten Cate, C., & Janik, V. M. (2021). The multi-dimensional nature of vocal learning. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 376: 20200236. doi:10.1098/rstb.2020.0236.

    Abstract

    How learning affects vocalizations is a key question in the study of animal
    communication and human language. Parallel efforts in birds and humans
    have taught us much about how vocal learning works on a behavioural
    and neurobiological level. Subsequent efforts have revealed a variety of
    cases among mammals in which experience also has a major influence on
    vocal repertoires. Janik and Slater (Anim. Behav. 60, 1–11. (doi:10.1006/
    anbe.2000.1410)) introduced the distinction between vocal usage and pro-
    duction learning, providing a general framework to categorize how
    different types of learning influence vocalizations. This idea was built on
    by Petkov and Jarvis (Front. Evol. Neurosci. 4, 12. (doi:10.3389/fnevo.2012.
    00012)) to emphasize a more continuous distribution between limited and
    more complex vocal production learners. Yet, with more studies providing
    empirical data, the limits of the initial frameworks become apparent.
    We build on these frameworks to refine the categorization of vocal learning
    in light of advances made since their publication and widespread agreement
    that vocal learning is not a binary trait. We propose a novel classification
    system, based on the definitions by Janik and Slater, that deconstructs
    vocal learning into key dimensions to aid in understanding the mechanisms
    involved in this complex behaviour. We consider how vocalizations can
    change without learning, and a usage learning framework that considers
    context specificity and timing. We identify dimensions of vocal production
    learning, including the copying of auditory models (convergence/
    divergence on model sounds, accuracy of copying), the degree of change
    (type and breadth of learning) and timing (when learning takes place, the
    length of time it takes and how long it is retained). We consider grey
    areas of classification and current mechanistic understanding of these beha-
    viours. Our framework identifies research needs and will help to inform
    neurobiological and evolutionary studies endeavouring to uncover the
    multi-dimensional nature of vocal learning.
    This article is part of the theme issue ‘Vocal learning in animals and
    humans’.
  • Vernes, S. C., Janik, V. M., Fitch, W. T., & Slater, P. J. B. (Eds.). (2021). Vocal learning in animals and humans [Special Issue]. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 376.
  • Vernes, S. C., Janik, V. M., Fitch, W. T., & Slater, P. J. B. (2021). Vocal learning in animals and humans. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 376: 20200234. doi:10.1098/rstb.2020.0234.
  • Vernes, S. C., MacDermot, K. D., Monaco, A. P., & Fisher, S. E. (2009). Assessing the impact of FOXP1 mutations on developmental verbal dyspraxia. European Journal of Human Genetics, 17(10), 1354-1358. doi:10.1038/ejhg.2009.43.

    Abstract

    Neurodevelopmental disorders that disturb speech and language are highly heritable. Isolation of the underlying genetic risk factors has been hampered by complexity of the phenotype and potentially large number of contributing genes. One exception is the identification of rare heterozygous mutations of the FOXP2 gene in a monogenic syndrome characterised by impaired sequencing of articulatory gestures, disrupting speech (developmental verbal dyspraxia, DVD), as well as multiple deficits in expressive and receptive language. The protein encoded by FOXP2 belongs to a divergent subgroup of forkhead-box transcription factors, with a distinctive DNA-binding domain and motifs that mediate hetero- and homodimerisation. FOXP1, the most closely related member of this subgroup, can directly interact with FOXP2 and is co-expressed in neural structures relevant to speech and language disorders. Moreover, investigations of songbird orthologues indicate that combinatorial actions of the two proteins may play important roles in vocal learning, leading to the suggestion that human FOXP1 should be considered a strong candidate for involvement in DVD. Thus, in this study, we screened the entire coding region of FOXP1 (exons and flanking intronic sequence) for nucleotide changes in a panel of probands used earlier to detect novel mutations in FOXP2. A non-synonymous coding change was identified in a single proband, yielding a proline-to-alanine change (P215A). However, this was also found in a random control sample. Analyses of non-coding SNP changes did not find any correlation with affection status. We conclude that FOXP1 mutations are unlikely to represent a major cause of DVD.

    Additional information

    ejhg200943x1.pdf
  • Vernes, S. C., Oliver, P. L., Spiteri, E., Lockstone, H. E., Puliyadi, R., Taylor, J. M., Ho, J., Mombereau, C., Brewer, A., Lowy, E., Nicod, J., Groszer, M., Baban, D., Sahgal, N., Cazier, J.-B., Ragoussis, J., Davies, K. E., Geschwind, D. H., & Fisher, S. E. (2011). Foxp2 regulates gene networks implicated in neurite outgrowth in the developing brain. PLoS Genetics, 7(7): e1002145. doi:10.1371/journal.pgen.1002145.

    Abstract

    Forkhead-box protein P2 is a transcription factor that has been associated with intriguing aspects of cognitive function in humans, non-human mammals, and song-learning birds. Heterozygous mutations of the human FOXP2 gene cause a monogenic speech and language disorder. Reduced functional dosage of the mouse version (Foxp2) causes deficient cortico-striatal synaptic plasticity and impairs motor-skill learning. Moreover, the songbird orthologue appears critically important for vocal learning. Across diverse vertebrate species, this well-conserved transcription factor is highly expressed in the developing and adult central nervous system. Very little is known about the mechanisms regulated by Foxp2 during brain development. We used an integrated functional genomics strategy to robustly define Foxp2-dependent pathways, both direct and indirect targets, in the embryonic brain. Specifically, we performed genome-wide in vivo ChIP–chip screens for Foxp2-binding and thereby identified a set of 264 high-confidence neural targets under strict, empirically derived significance thresholds. The findings, coupled to expression profiling and in situ hybridization of brain tissue from wild-type and mutant mouse embryos, strongly highlighted gene networks linked to neurite development. We followed up our genomics data with functional experiments, showing that Foxp2 impacts on neurite outgrowth in primary neurons and in neuronal cell models. Our data indicate that Foxp2 modulates neuronal network formation, by directly and indirectly regulating mRNAs involved in the development and plasticity of neuronal connections
  • Vernes, S. C., & Fisher, S. E. (2011). Functional genomic dissection of speech and language disorders. In J. D. Clelland (Ed.), Genomics, proteomics, and the nervous system (pp. 253-278). New York: Springer.

    Abstract

    Mutations of the human FOXP2 gene have been shown to cause severe difficulties in learning to make coordinated sequences of articulatory gestures that underlie speech (developmental verbal dyspraxia or DVD). Affected individuals are impaired in multiple aspects of expressive and receptive linguistic processing and ­display abnormal grey matter volume and functional activation patterns in cortical and subcortical brain regions. The protein encoded by FOXP2 belongs to a divergent subgroup of forkhead-box transcription factors, with a distinctive DNA-binding domain and motifs that mediate hetero- and homodimerization. This chapter describes the successful use of FOXP2 as a unique molecular window into neurogenetic pathways that are important for speech and language development, adopting several complementary strategies. These include direct functional investigations of FOXP2 splice variants and the effects of etiological mutations. FOXP2’s role as a transcription factor also enabled the development of functional genomic routes for dissecting neurogenetic mechanisms that may be relevant for speech and language. By identifying downstream target genes regulated by FOXP2, it was possible to identify common regulatory themes in modulating synaptic plasticity, neurodevelopment, and axon guidance. These targets represent novel entrypoints into in vivo pathways that may be disturbed in speech and language disorders. The identification of FOXP2 target genes has also led to the discovery of a shared neurogenetic pathway between clinically distinct language disorders; the rare Mendelian form of DVD and a complex and more common form of language ­disorder known as Specific Language Impairment.

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  • Vernes, S. C., & Fisher, S. E. (2009). Unravelling neurogenetic networks implicated in developmental language disorders. Biochemical Society Transactions (London), 37, 1263-1269. doi:10.1042/BST0371263.

    Abstract

    Childhood syndromes disturbing language development are common and display high degrees of heritability. In most cases, the underlying genetic architecture is likely to be complex, involving multiple chromosomal loci and substantial heterogeneity, which makes it difficult to track down the crucial genomic risk factors. Investigation of rare Mendelian phenotypes offers a complementary route for unravelling key neurogenetic pathways. The value of this approach is illustrated by the discovery that heterozygous FOXP2 (where FOX is forkhead box) mutations cause an unusual monogenic disorder, characterized by problems with articulating speech along with deficits in expressive and receptive language. FOXP2 encodes a regulatory protein, belonging to the forkhead box family of transcription factors, known to play important roles in modulating gene expression in development and disease. Functional genetics using human neuronal models suggest that the different FOXP2 isoforms generated by alternative splicing have distinct properties and may act to regulate each other's activity. Such investigations have also analysed the missense and nonsense mutations found in cases of speech and language disorder, showing that they alter intracellular localization, DNA binding and transactivation capacity of the mutated proteins. Moreover, in the brains of mutant mice, aetiological mutations have been found to disrupt the synaptic plasticity of Foxp2-expressing circuitry. Finally, although mutations of FOXP2 itself are rare, the downstream networks which it regulates in the brain appear to be broadly implicated in typical forms of language impairment. Thus, through ongoing identification of regulated targets and interacting co-factors, this gene is providing the first molecular entry points into neural mechanisms that go awry in language-related disorders
  • Versteegh, M., Ten Bosch, L., & Boves, L. (2011). Modelling novelty preference in word learning. In Proceedings of the 12th Annual Conference of the International Speech Communication Association (Interspeech 2011), Florence, Italy (pp. 761-764).

    Abstract

    This paper investigates the effects of novel words on a cognitively plausible computational model of word learning. The model is first familiarized with a set of words, achieving high recognition scores and subsequently offered novel words for training. We show that the model is able to recognize the novel words as different from the previously seen words, based on a measure of novelty that we introduce. We then propose a procedure analogous to novelty preference in infants. Results from simulations of word learning show that adding this procedure to our model speeds up training and helps the model attain higher recognition rates.
  • Verweij, H., Windhouwer, M., & Wittenburg, P. (2011). Knowledge management for small languages. In V. Luzar-Stiffler, I. Jarec, & Z. Bekic (Eds.), Proceedings of the ITI 2011 33rd Int. Conf. on Information Technology Interfaces, June 27-30, 2011, Cavtat, Croatia (pp. 213-218). Zagreb, Croatia: University Computing Centre, University of Zagreb.

    Abstract

    In this paper an overview of the knowledge components needed for extensive documentation of small languages is given. The Language Archive is striving to offer all these tools to the linguistic community. The major tools in relation to the knowledge components are described. Followed by a discussion on what is currently lacking and possible strategies to move forward.
  • De Vignemont, F., Majid, A., Jola, C., & Haggard, P. (2009). Segmenting the body into parts: Evidence from biases in tactile perception. Quarterly Journal of Experimental Psychology, 62, 500-512. doi:10.1080/17470210802000802.

    Abstract

    How do we individuate body parts? Here, we investigated the effect of body segmentation between hand and arm in tactile and visual perception. In a first experiment, we showed that two tactile stimuli felt farther away when they were applied across the wrist than when they were applied within a single body part (palm or forearm), indicating a “category boundary effect”. In the following experiments, we excluded two hypotheses, which attributed tactile segmentation to other, nontactile factors. In Experiment 2, we showed that the boundary effect does not arise from motor cues. The effect was reduced during a motor task involving flexion and extension movements of the wrist joint. Action brings body parts together into functional units, instead of pulling them apart. In Experiments 3 and 4, we showed that the effect does not arise from perceptual cues of visual discontinuities. We did not find any segmentation effect for the visual percept of the body in Experiment 3, nor for a neutral shape in Experiment 4. We suggest that the mental representation of the body is structured in categorical body parts delineated by joints, and that this categorical representation modulates tactile spatial perception.
  • Virpioja, S., Lehtonen, M., Hulten, A., Salmelin, R., & Lagus, K. (2011). Predicting reaction times in word recognition by unsupervised learning of morphology. In W. Honkela, W. Dutch, M. Girolami, & S. Kaski (Eds.), Artificial Neural Networks and Machine Learning – ICANN 2011 (pp. 275-282). Berlin: Springer.

    Abstract

    A central question in the study of the mental lexicon is how morphologically complex words are processed. We consider this question from the viewpoint of statistical models of morphology. As an indicator of the mental processing cost in the brain, we use reaction times to words in a visual lexical decision task on Finnish nouns. Statistical correlation between a model and reaction times is employed as a goodness measure of the model. In particular, we study Morfessor, an unsupervised method for learning concatenative morphology. The results for a set of inflected and monomorphemic Finnish nouns reveal that the probabilities given by Morfessor, especially the Categories-MAP version, show considerably higher correlations to the reaction times than simple word statistics such as frequency, morphological family size, or length. These correlations are also higher than when any individual test subject is viewed as a model.
  • Von Stutterheim, C., Carroll, M., & Klein, W. (2009). New perspectives in analyzing aspectual distinctions across languages. In W. Klein, & P. Li (Eds.), The expression of time (pp. 195-216). Berlin: Mouton de Gruyter.
  • Von Holzen, K., & Bergmann, C. (2021). The development of infants’ responses to mispronunciations: A meta-analysis. Developmental Psychology, 57(1), 1-18. doi:10.1037/dev0001141.

    Abstract

    As they develop into mature speakers of their native language, infants must not only learn words but also the sounds that make up those words. To do so, they must strike a balance between accepting speaker dependent variation (e.g. mood, voice, accent), but appropriately rejecting variation when it (potentially) changes a word's meaning (e.g. cat vs. hat). This meta-analysis focuses on studies investigating infants' ability to detect mispronunciations in familiar words, or mispronunciation sensitivity. Our goal was to evaluate the development of infants' phonological representations for familiar words as well as explore the role of experimental manipulations related to theoretical questions and analysis choices. The results show that although infants are sensitive to mispronunciations, they still accept these altered forms as labels for target objects. Interestingly, this ability is not modulated by age or vocabulary size, suggesting that a mature understanding of native language phonology may be present in infants from an early age, possibly before the vocabulary explosion. These results also support several theoretical assumptions made in the literature, such as sensitivity to mispronunciation size and position of the mispronunciation. We also shed light on the impact of data analysis choices that may lead to different conclusions regarding the development of infants' mispronunciation sensitivity. Our paper concludes with recommendations for improved practice in testing infants' word and sentence processing on-line.
  • De Vos, C. (2011). A signers' village in Bali, Indonesia. Minpaku Anthropology Newsletter, 33, 4-5.
  • De Vos, C. (2009). [Review of the book Language complexity as an evolving variable ed. by Geoffrey Sampson, David Gil and Peter Trudgill]. LINGUIST List, 20.4275. Retrieved from http://linguistlist.org/issues/20/20-4275.html.
  • De Vos, C., Van der Kooij, E., & Crasborn, O. (2009). Mixed signals: Combining linguistic and affective functions of eyebrows in questions in Sign Language of the Netherlands. Language and Speech, 52(2/3), 315-339. doi:10.1177/0023830909103177.

    Abstract

    The eyebrows are used as conversational signals in face-to-face spoken interaction (Ekman, 1979). In Sign Language of the Netherlands (NGT), the eyebrows are typically furrowed in content questions, and raised in polar questions (Coerts, 1992). On the other hand, these eyebrow positions are also associated with anger and surprise, respectively, in general human communication (Ekman, 1993). This overlap in the functional load of the eyebrow positions results in a potential conflict for NGT signers when combining these functions simultaneously. In order to investigate the effect of the simultaneous realization of both functions on the eyebrow position we elicited instances of both question types with neutral affect and with various affective states. The data were coded using the Facial Action Coding System (FACS: Ekman, Friesen, & Hager, 2002) for type of brow movement as well as for intensity. FACS allows for the coding of muscle groups, which are termed Action Units (AUs) and which produce facial appearance changes. The results show that linguistic and affective functions of eyebrows may influence each other in NGT. That is, in surprised polar questions and angry content question a phonetic enhancement takes place of raising and furrowing, respectively. In the items with contrasting eyebrow movements, the grammatical and affective AUs are either blended (occur simultaneously) or they are realized sequentially. Interestingly, the absence of eyebrow raising (marked by AU 1+2) in angry polar questions, and the presence of eyebrow furrowing (realized by AU 4) in surprised content questions suggests that in general AU 4 may be phonetically stronger than AU 1 and AU 2, independent of its linguistic or affective function.
  • De Vos, C. (2011). Kata Kolok color terms and the emergence of lexical signs in rural signing communities. The Senses & Society, 6(1), 68-76. doi:10.2752/174589311X12893982233795.

    Abstract

    How do new languages develop systematic ways to talk about sensory experiences, such as color? To what extent is the evolution of color terms guided by societal factors? This paper describes the color lexicon of a rural sign language called Kata Kolok which emerged approximately one century ago in a Balinese village. Kata Kolok has four color signs: black, white, red and a blue-green term. In addition, two non-conventionalized means are used to provide color descriptions: naming relevant objects, and pointing to objects in the vicinity. Comparison with Balinese culture and spoken Balinese brings to light discrepancies between the systems, suggesting that neither cultural practices nor language contact have driven the formation of color signs in Kata Kolok. The few lexicographic investigations from other rural sign languages report limitations in the domain of color. On the other hand, larger, urban signed languages have extensive systems, for example, Australian Sign Language has up to nine color terms (Woodward 1989: 149). These comparisons support the finding that, rural sign languages like Kata Kolok fail to provide the societal pressures for the lexicon to expand further.
  • Vosse, T., & Kempen, G. (2009). In defense of competition during syntactic ambiguity resolution. Journal of Psycholinguistic Research, 38(1), 1-9. doi:10.1007/s10936-008-9075-1.

    Abstract

    In a recent series of publications (Traxler et al. J Mem Lang 39:558–592, 1998; Van Gompel et al. J Mem Lang 52:284–307, 2005; see also Van Gompel et al. (In: Kennedy, et al.(eds) Reading as a perceptual process, Oxford, Elsevier pp 621–648, 2000); Van Gompel et al. J Mem Lang 45:225–258, 2001) eye tracking data are reported showing that globally ambiguous (GA) sentences are read faster than locally ambiguous (LA) counterparts. They argue that these data rule out “constraint-based” models where syntactic and conceptual processors operate concurrently and syntactic ambiguity resolution is accomplished by competition. Such models predict the opposite pattern of reading times. However, this argument against competition is valid only in conjunction with two standard assumptions in current constraint-based models of sentence comprehension: (1) that syntactic competitions (e.g., Which is the best attachment site of the incoming constituent?) are pooled together with conceptual competitions (e.g., Which attachment site entails the most plausible meaning?), and (2) that the duration of a competition is a function of the overall (pooled) quality score obtained by each competitor. We argue that it is not necessary to abandon competition as a successful basis for explaining parsing phenomena and that the above-mentioned reading time data can be accounted for by a parallel-interactive model with conceptual and syntactic processors that do not pool their quality scores together. Within the individual linguistic modules, decision-making can very well be competition-based.
  • Vosse, T., & Kempen, G. (2009). The Unification Space implemented as a localist neural net: Predictions and error-tolerance in a constraint-based parser. Cognitive Neurodynamics, 3, 331-346. doi:10.1007/s11571-009-9094-0.

    Abstract

    We introduce a novel computer implementation of the Unification-Space parser (Vosse & Kempen 2000) in the form of a localist neural network whose dynamics is based on interactive activation and inhibition. The wiring of the network is determined by Performance Grammar (Kempen & Harbusch 2003), a lexicalist formalism with feature unification as binding operation. While the network is processing input word strings incrementally, the evolving shape of parse trees is represented in the form of changing patterns of activation in nodes that code for syntactic properties of words and phrases, and for the grammatical functions they fulfill. The system is capable, at least in a qualitative and rudimentary sense, of simulating several important dynamic aspects of human syntactic parsing, including garden-path phenomena and reanalysis, effects of complexity (various types of clause embeddings), fault-tolerance in case of unification failures and unknown words, and predictive parsing (expectation-based analysis, surprisal effects). English is the target language of the parser described.
  • De Vries, M., Christiansen, M. H., & Petersson, K. M. (2011). Learning recursion: Multiple nested and crossed dependencies. Biolinguistics, 5(1/2), 010-035.

    Abstract

    Language acquisition in both natural and artificial language learning settings crucially depends on extracting information from sequence input. A shared sequence learning mechanism is thus assumed to underlie both natural and artificial language learning. A growing body of empirical evidence is consistent with this hypothesis. By means of artificial language learning experiments, we may therefore gain more insight in this shared mechanism. In this paper, we review empirical evidence from artificial language learning and computational modelling studies, as well as natural language data, and suggest that there are two key factors that help determine processing complexity in sequence learning, and thus in natural language processing. We propose that the specific ordering of non-adjacent dependencies (i.e., nested or crossed), as well as the number of non-adjacent dependencies to be resolved simultaneously (i.e., two or three) are important factors in gaining more insight into the boundaries of human sequence learning; and thus, also in natural language processing. The implications for theories of linguistic competence are discussed.
  • Vuong, L., & Martin, R. C. (2011). LIFG-based attentional control and the resolution of lexical ambiguities in sentence context. Brain and Language, 116, 22-32. doi:10.1016/j.bandl.2010.09.012.

    Abstract

    The role of attentional control in lexical ambiguity resolution was examined in two patients with damage to the left inferior frontal gyrus (LIFG) and one control patient with non-LIFG damage. Experiment 1 confirmed that the LIFG patients had attentional control deficits compared to normal controls while the non-LIFG patient was relatively unimpaired. Experiment 2 showed that all three patients did as well as normal controls in using biasing sentence context to resolve lexical ambiguities involving balanced ambiguous words, but only the LIFG patients took an abnormally long time on lexical ambiguities that resolved toward a subordinate meaning of biased ambiguous words. Taken together, the results suggest that attentional control plays an important role in the resolution of certain lexical ambiguities – those that induce strong interference from context-inappropriate meanings (i.e., dominant meanings of biased ambiguous words).
  • Vuong, L., Meyer, A. S., & Christiansen, M. H. (2011). Simultaneous online tracking of adjacent and non-adjacent dependencies in statistical learning. In L. Carlson, C. Hölscher, & T. Shipley (Eds.), Proceedings of the 33rd Annual Conference of the Cognitive Science Society (pp. 964-969). Austin, TX: Cognitive Science Society.
  • Wagner, M. A., Broersma, M., McQueen, J. M., Dhaene, S., & Lemhöfer, K. (2021). Phonetic convergence to non-native speech: Acoustic and perceptual evidence. Journal of Phonetics, 88: 101076. doi:10.1016/j.wocn.2021.101076.

    Abstract

    While the tendency of speakers to align their speech to that of others acoustic-phonetically has been widely studied among native speakers, very few studies have examined whether natives phonetically converge to non-native speakers. Here we measured native Dutch speakers’ convergence to a non-native speaker with an unfamiliar accent in a novel non-interactive task. Furthermore, we assessed the role of participants’ perceptions of the non-native accent in their tendency to converge. In addition to a perceptual measure (AXB ratings), we examined convergence on different acoustic dimensions (e.g., vowel spectra, fricative CoG, speech rate, overall f0) to determine what dimensions, if any, speakers converge to. We further combined these two types of measures to discover what dimensions weighed in raters’ judgments of convergence. The results reveal overall convergence to our non-native speaker, as indexed by both perceptual and acoustic measures. However, the ratings suggest the stronger participants rated the non-native accent to be, the less likely they were to converge. Our findings add to the growing body of evidence that natives can phonetically converge to non-native speech, even without any apparent socio-communicative motivation to do so. We argue that our results are hard to integrate with a purely social view of convergence.
  • Wagner, M., Tran, D., Togneri, R., Rose, P., Powers, D., Onslow, M., Loakes, D., Lewis, T., Kuratate, T., Kinoshita, Y., Kemp, N., Ishihara, S., Ingram, J., Hajek, J., Grayden, D., Göcke, R., Fletcher, J., Estival, D., Epps, J., Dale, R. and 11 moreWagner, M., Tran, D., Togneri, R., Rose, P., Powers, D., Onslow, M., Loakes, D., Lewis, T., Kuratate, T., Kinoshita, Y., Kemp, N., Ishihara, S., Ingram, J., Hajek, J., Grayden, D., Göcke, R., Fletcher, J., Estival, D., Epps, J., Dale, R., Cutler, A., Cox, F., Chetty, G., Cassidy, S., Butcher, A., Burnham, D., Bird, S., Best, C., Bennamoun, M., Arciuli, J., & Ambikairajah, E. (2011). The Big Australian Speech Corpus (The Big ASC). In M. Tabain, J. Fletcher, D. Grayden, J. Hajek, & A. Butcher (Eds.), Proceedings of the Thirteenth Australasian International Conference on Speech Science and Technology (pp. 166-170). Melbourne: ASSTA.
  • Wang, L. (2011). The influence of information structure on language comprehension: A neurocognitive perspective. PhD Thesis, Radboud University Nijmegen, Nijmegen.
  • Wang, L., Hagoort, P., & Yang, Y. (2009). Semantic illusion depends on information structure: ERP evidence. Brain Research, 1282, 50-56. doi:10.1016/j.brainres.2009.05.069.

    Abstract

    Next to propositional content, speakers distribute information in their utterances in such a way that listeners can make a distinction between new (focused) and given (non-focused) information. This is referred to as information structure. We measured event-related potentials (ERPs) to explore the role of information structure in semantic processing. Following different questions in wh-question-answer pairs (e.g. What kind of vegetable did Ming buy for cooking today? /Who bought the vegetables for cooking today?), the answer sentences (e.g., Ming bought eggplant/beef to cook today.) contained a critical word, which was either semantically appropriate (eggplant) or inappropriate (beef), and either focus or non-focus. The results showed a full N400 effect only when the critical words were in focus position. In non-focus position a strongly reduced N400 effect was observed, in line with the well-known semantic illusion effect. The results suggest that information structure facilitates semantic processing by devoting more resources to focused information.
  • Wang, L., Bastiaansen, M. C. M., Yang, Y., & Hagoort, P. (2011). The influence of information structure on the depth of semantic processing: How focus and pitch accent determine the size of the N400 effect. Neuropsychologia, 49, 813-820. doi:10.1016/j.neuropsychologia.2010.12.035.

    Abstract

    To highlight relevant information in dialogues, both wh-question context and pitch accent in answers can be used, such that focused information gains more attention and is processed more elaborately. To evaluate the relative influence of context and pitch accent on the depth of semantic processing, we measured Event-Related Potentials (ERPs) to auditorily presented wh-question-answer pairs. A semantically incongruent word in the answer occurred either in focus or non-focus position as determined by the context, and this word was either accented or unaccented. Semantic incongruency elicited different N400 effects in different conditions. The largest N400 effect was found when the question-marked focus was accented, while the other three conditions elicited smaller N400 effects. The results suggest that context and accentuation interact. Thus accented focused words were processed more deeply compared to conditions where focus and accentuation mismatched, or when the new information had no marking. In addition, there seems to be sex differences in the depth of semantic processing. For males, a significant N400 effect was observed only when the question-marked focus was accented, reduced N400 effects were found in the other dialogues. In contrast, females produced similar N400 effects in all the conditions. These results suggest that regardless of external cues, females tend to engage in more elaborate semantic processing compared to males.
  • Wang, X., Jahagirdar, S., Bakker, W., Lute, C., Kemp, B., Knegsel, A. v., & Saccenti, E. (2024). Discrimination of Lipogenic or Glucogenic Diet Effects in Early-Lactation Dairy Cows Using Plasma Metabolite Abundances and Ratios in Combination with Machine Learning. Metabolites, 14(4): 230. doi:10.3390/metabo14040230.

    Abstract

    During early lactation, dairy cows have a negative energy balance since their energy demands exceed their energy intake: in this study, we aimed to investigate the association between diet and plasma metabolomics profiles and how these relate to energy unbalance of course in the early-lactation stage. Holstein-Friesian cows were randomly assigned to a glucogenic (n = 15) or lipogenic (n = 15) diet in early lactation. Blood was collected in week 2 and week 4 after calving. Plasma metabolite profiles were detected using liquid chromatography–mass spectrometry (LC-MS), and a total of 39 metabolites were identified. Two plasma metabolomic profiles were available every week for each cow. Metabolite abundance and metabolite ratios were used for the analysis using the XGboost algorithm to discriminate between diet treatment and lactation week. Using metabolite ratios resulted in better discrimination performance compared with the metabolite abundances in assigning cows to a lipogenic diet or a glucogenic diet. The quality of the discrimination of performance of lipogenic diet and glucogenic diet effects improved from 0.606 to 0.753 and from 0.696 to 0.842 in week 2 and week 4 (as measured by area under the curve, AUC), when the metabolite abundance ratios were used instead of abundances. The top discriminating ratios for diet were the ratio of arginine to tyrosine and the ratio of aspartic acid to valine in week 2 and week 4, respectively. For cows fed the lipogenic diet, choline and the ratio of creatinine to tryptophan were top features to discriminate cows in week 2 vs. week 4. For cows fed the glucogenic diet, methionine and the ratio of 4-hydroxyproline to choline were top features to discriminate dietary effects in week 2 or week 4. This study shows the added value of using metabolite abundance ratios to discriminate between lipogenic and glucogenic diet and lactation weeks in early-lactation cows when using metabolomics data. The application of this research will help to accurately regulate the nutrition of lactating dairy cows and promote sustainable agricultural development.
  • Wang, M.-Y., & Yuan, Z. (2021). EEG decoding of dynamic facial expressions of emotion: Evidence from SSVEP and causal cortical network dynamics. Neuroscience, 459, 50-58. doi:10.1016/j.neuroscience.2021.01.040.

    Abstract

    The neural cognitive mechanism in processing static facial expressions (FEs) has been well documented, whereas the one underlying perceiving dynamic faces remains unclear. In this study, Fourier transformation and time–frequency analysis of Electroencephalography (EEG) data were carried out to detect the brain activation underlying dynamic or static FEs while twenty-one participants were viewing dynamic or static faces flicking at 10 Hz. In particular, steady-state visual evoked potentials (SSVEPs) were quantified through spectral power analysis of EEG recordings. Besides, Granger causality (GC) analysis (GCA) was also performed to capture the causal cortical network dynamics during dynamic or static FEs of emotion. It was discovered that the dynamic (from neural to happy (N2H) or vice versa (H2N)) FEs elicited larger SSVEPs than the static ones. Additionally, GCA demonstrated that the H2N case, in which happy FEs were being gradually changed into neutral ones, exhibited larger GC measure during the late processing stage than that from the early stage. Consequently, enhanced SSVEPs and effective brain connectivity for dynamic FEs illustrated that participants might need consume more attentional resources to process the dynamic faces, particularly for the change from happy to neutral faces. The new neural index might facilitate us to better understand the cognitive processing of dynamic and static FEs.
  • Wang, M.-Y., Korbmacher, M., Eikeland, R., Craven, A. R., & Specht, K. (2024). The intra‐individual reliability of 1H‐MRS measurement in the anterior cingulate cortex across 1 year. Human Brain Mapping, 45(1): e26531. doi:10.1002/hbm.26531.

    Abstract

    Magnetic resonance spectroscopy (MRS) is the primary method that can measure the levels of metabolites in the brain in vivo. To achieve its potential in clinical usage, the reliability of the measurement requires further articulation. Although there are many studies that investigate the reliability of gamma-aminobutyric acid (GABA), comparatively few studies have investigated the reliability of other brain metabolites, such as glutamate (Glu), N-acetyl-aspartate (NAA), creatine (Cr), phosphocreatine (PCr), or myo-inositol (mI), which all play a significant role in brain development and functions. In addition, previous studies which predominately used only two measurements (two data points) failed to provide the details of the time effect (e.g., time-of-day) on MRS measurement within subjects. Therefore, in this study, MRS data located in the anterior cingulate cortex (ACC) were repeatedly recorded across 1 year leading to at least 25 sessions for each subject with the aim of exploring the variability of other metabolites by using the index coefficient of variability (CV); the smaller the CV, the more reliable the measurements. We found that the metabolites of NAA, tNAA, and tCr showed the smallest CVs (between 1.43% and 4.90%), and the metabolites of Glu, Glx, mI, and tCho showed modest CVs (between 4.26% and 7.89%). Furthermore, we found that the concentration reference of the ratio to water results in smaller CVs compared to the ratio to tCr. In addition, we did not find any time-of-day effect on the MRS measurements. Collectively, the results of this study indicate that the MRS measurement is reasonably reliable in quantifying the levels of metabolites.

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  • Warner, N., Fountain, A., & Tucker, B. V. (2009). Cues to perception of reduced flaps. Journal of the Acoustical Society of America, 125(5), 3317-3327. doi:10.1121/1.3097773.

    Abstract

    Natural, spontaneous speech (and even quite careful speech) often shows extreme reduction in many speech segments, even resulting in apparent deletion of consonants. Where the flap ([(sic)]) allophone of /t/ and /d/ is expected in American English, one frequently sees an approximant-like or even vocalic pattern, rather than a clear flap. Still, the /t/ or /d/ is usually perceived, suggesting the acoustic characteristics of a reduced flap are sufficient for perception of a consonant. This paper identifies several acoustic characteristics of reduced flaps based on previous acoustic research (size of intensity dip, consonant duration, and F4 valley) and presents phonetic identification data for continua that manipulate these acoustic characteristics of reduction. The results indicate that the most obvious types of acoustic variability seen in natural flaps do affect listeners' percept of a consonant, but not sufficiently to completely account for the percept. Listeners are affected by the acoustic characteristics of consonant reduction, but they are also very skilled at evaluating variability along the acoustic dimensions that realize reduction.

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  • Warner, N., Luna, Q., Butler, L., & Van Volkinburg, H. (2009). Revitalization in a scattered language community: Problems and methods from the perspective of Mutsun language revitalization. International Journal of the Sociology of Language, 198, 135-148. doi:10.1515/IJSL.2009.031.

    Abstract

    This article addresses revitalization of a dormant language whose prospective speakers live in scattered geographical areas. In comparison to increasing the usage of an endangered language, revitalizing a dormant language (one with no living speakers) requires different methods to gain knowledge of the language. Language teaching for a dormant language with a scattered community presents different problems from other teaching situations. In this article, we discuss the types of tasks that must be accomplished for dormant-language revitalization, with particular focus on development of teaching materials. We also address the role of computer technologies, arguing that each use of technology should be evaluated for how effectively it increases fluency. We discuss methods for achieving semi-fluency for the first new speakers of a dormant language, and for spreading the language through the community.
  • Weber, A. (1998). Listening to nonnative language which violates native assimilation rules. In D. Duez (Ed.), Proceedings of the European Scientific Communication Association workshop: Sound patterns of Spontaneous Speech (pp. 101-104).

    Abstract

    Recent studies using phoneme detection tasks have shown that spoken-language processing is neither facilitated nor interfered with by optional assimilation, but is inhibited by violation of obligatory assimilation. Interpretation of these results depends on an assessment of their generality, specifically, whether they also obtain when listeners are processing nonnative language. Two separate experiments are presented in which native listeners of German and native listeners of Dutch had to detect a target fricative in legal monosyllabic Dutch nonwords. All of the nonwords were correct realisations in standard Dutch. For German listeners, however, half of the nonwords contained phoneme strings which violate the German fricative assimilation rule. Whereas the Dutch listeners showed no significant effects, German listeners detected the target fricative faster when the German fricative assimilation was violated than when no violation occurred. The results might suggest that violation of assimilation rules does not have to make processing more difficult per se.
  • Weber, A., Broersma, M., & Aoyagi, M. (2011). Spoken-word recognition in foreign-accented speech by L2 listeners. Journal of Phonetics, 39, 479-491. doi:10.1016/j.wocn.2010.12.004.

    Abstract

    Two cross-modal priming studies investigated the recognition of English words spoken with a foreign accent. Auditory English primes were either typical of a Dutch accent or typical of a Japanese accent in English and were presented to both Dutch and Japanese L2 listeners. Lexical-decision times to subsequent visual target words revealed that foreign-accented words can facilitate word recognition for L2 listeners if at least one of two requirements is met: the foreign-accented production is in accordance with the language background of the L2 listener, or the foreign accent is perceptually confusable with the standard pronunciation for the L2 listener. If neither one of the requirements is met, no facilitatory effect of foreign accents on L2 word recognition is found. Taken together, these findings suggest that linguistic experience with a foreign accent affects the ability to recognize words carrying this accent, and there is furthermore a general benefit for L2 listeners for recognizing foreign-accented words that are perceptually confusable with the standard pronunciation.
  • Weber, K., & Indefrey, P. (2009). Syntactic priming in German–English bilinguals during sentence comprehension. Neuroimage, 46, 1164-1172. doi:10.1016/j.neuroimage.2009.03.040.

    Abstract

    A longstanding question in bilingualism is whether syntactic information is shared between the two language processing systems. We used an fMRI repetition suppression paradigm to investigate syntactic priming in reading comprehension in German–English late-acquisition bilinguals. In comparison to conventional subtraction analyses in bilingual experiments, repetition suppression has the advantage of being able to detect neuronal populations that are sensitive to properties that are shared by consecutive stimuli. In this study, we manipulated the syntactic structure between prime and target sentences. A sentence with a passive sentence structure in English was preceded either by a passive or by an active sentence in English or German. We looked for repetition suppression effects in left inferior frontal, left precentral and left middle temporal regions of interest. These regions were defined by a contrast of all non-target sentences in German and English versus the baseline of sentence-format consonant strings. We found decreases in activity (repetition suppression effects) in these regions of interest following the repetition of syntactic structure from the first to the second language and within the second language.
    Moreover, a separate behavioural experiment using a word-by-word reading paradigm similar to the fMRI experiment showed faster reading times for primed compared to unprimed English target sentences regardless of whether they were preceded by an English or a German sentence of the same structure.
    We conclude that there is interaction between the language processing systems and that at least some syntactic information is shared between a bilingual's languages with similar syntactic structures.

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  • Weber, A. (2009). The role of linguistic experience in lexical recognition [Abstract]. Journal of the Acoustical Society of America, 125, 2759.

    Abstract

    Lexical recognition is typically slower in L2 than in L1. Part of the difficulty comes from a not precise enough processing of L2 phonemes. Consequently, L2 listeners fail to eliminate candidate words that L1 listeners can exclude from competing for recognition. For instance, the inability to distinguish /r/ from /l/ in rocket and locker makes for Japanese listeners both words possible candidates when hearing their onset (e.g., Cutler, Weber, and Otake, 2006). The L2 disadvantage can, however, be dispelled: For L2 listeners, but not L1 listeners, L2 speech from a non-native talker with the same language background is known to be as intelligible as L2 speech from a native talker (e.g., Bent and Bradlow, 2003). A reason for this may be that L2 listeners have ample experience with segmental deviations that are characteristic for their own accent. On this account, only phonemic deviations that are typical for the listeners’ own accent will cause spurious lexical activation in L2 listening (e.g., English magic pronounced as megic for Dutch listeners). In this talk, I will present evidence from cross-modal priming studies with a variety of L2 listener groups, showing how the processing of phonemic deviations is accent-specific but withstands fine phonetic differences.
  • Wegener, C. (2011). Expression of reciprocity in Savosavo. In N. Evans, A. Gaby, S. C. Levinson, & A. Majid (Eds.), Reciprocals and semantic typology (pp. 213-224). Amsterdam: Benjamins.

    Abstract

    This paper describes how reciprocity is expressed in the Papuan (i.e. non-Austronesian­) language Savosavo, spoken in the Solomon Islands. The main strategy is to use the reciprocal nominal mapamapa, which can occur in different NP positions and always triggers default third person singular masculine agreement, regardless of the number and gender of the referents. After a description of this as well as another strategy that is occasionally used (the ‘joint activity construction’), the paper will provide a detailed analysis of data elicited with set of video stimuli and show that the main strategy is used to describe even clearly asymmetric situations, as long as more than one person acts on more than one person in a joint activity.
  • Weissenborn, J. (1981). L'acquisition des prepositions spatiales: problemes cognitifs et linguistiques. In C. Schwarze (Ed.), Analyse des prépositions: IIIme colloque franco-allemand de linguistique théorique du 2 au 4 février 1981 à Constance (pp. 251-285). Tübingen: Niemeyer.
  • Wells, J. B., Christiansen, M. H., Race, D. S., Acheson, D. J., & MacDonald, M. C. (2009). Experience and sentence processing: Statistical learning and relative clause comprehension. Cognitive Psychology, 58(2), 250-271. doi:10.1016/j.cogpsych.2008.08.002.

    Abstract

    Many explanations of the difficulties associated with interpreting object relative clauses appeal to the demands that object relatives make on working memory. MacDonald and Christiansen [MacDonald, M. C., & Christiansen, M. H. (2002). Reassessing working memory: Comment on Just and Carpenter (1992) and Waters and Caplan (1996). Psychological Review, 109, 35-54] pointed to variations in reading experience as a source of differences, arguing that the unique word order of object relatives makes their processing more difficult and more sensitive to the effects of previous experience than the processing of subject relatives. This hypothesis was tested in a large-scale study manipulating reading experiences of adults over several weeks. The group receiving relative clause experience increased reading speeds for object relatives more than for subject relatives, whereas a control experience group did not. The reading time data were compared to performance of a computational model given different amounts of experience. The results support claims for experience-based individual differences and an important role for statistical learning in sentence comprehension processes.
  • Wesseldijk, L. W., Henechowicz, T. L., Baker, D. J., Bignardi, G., Karlsson, R., Gordon, R. L., Mosing, M. A., Ullén, F., & Fisher, S. E. (2024). Notes from Beethoven’s genome. Current Biology, 34(6), R233-R234. doi:10.1016/j.cub.2024.01.025.

    Abstract

    Rapid advances over the last decade in DNA sequencing and statistical genetics enable us to investigate the genomic makeup of individuals throughout history. In a recent notable study, Begg et al.1 used Ludwig van Beethoven’s hair strands for genome sequencing and explored genetic predispositions for some of his documented medical issues. Given that it was arguably Beethoven’s skills as a musician and composer that made him an iconic figure in Western culture, we here extend the approach and apply it to musicality. We use this as an example to illustrate the broader challenges of individual-level genetic predictions.

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  • Whitehouse, A. J., Bishop, D. V., Ang, Q., Pennell, C. E., & Fisher, S. E. (2011). CNTNAP2 variants affect early language development in the general population. Genes, Brain and Behavior, 10, 451-456. doi:10.1111/j.1601-183X.2011.00684.x.

    Abstract

    Early language development is known to be under genetic influence, but the genes affecting normal variation in the general population remain largely elusive. Recent studies of disorder reported that variants of the CNTNAP2 gene are associated both with language deficits in specific language impairment (SLI) and with language delays in autism. We tested the hypothesis that these CNTNAP2 variants affect communicative behavior, measured at 2 years of age in a large epidemiological sample, the Western Australian Pregnancy Cohort (Raine) Study. Singlepoint analyses of 1149 children (606 males, 543 emales) revealed patterns of association which were strikingly reminiscent of those observed in previous investigations of impaired language, centered on the same genetic markers, and with a consistent direction of effect (rs2710102, p = .0239; rs759178, p = .0248). Based on these findings we performed analyses of four-marker haplotypes of rs2710102- s759178-rs17236239-rs2538976, and identified significant association (haplotype TTAA, p = .049; haplotype GCAG, p = .0014). Our study suggests that common variants in the exon 13-15 region of CNTNAP2 influence early language acquisition, as assessed at age 2, in the general population. We propose that these CNTNAP2 variants increase susceptibility to SLI or autism when they occur together with other risk factors.

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  • Wilkin, K., & Holler, J. (2011). Speakers’ use of ‘action’ and ‘entity’ gestures with definite and indefinite references. In G. Stam, & M. Ishino (Eds.), Integrating gestures: The interdisciplinary nature of gesture (pp. 293-308). Amsterdam: John Benjamins.

    Abstract

    Common ground is an essential prerequisite for coordination in social interaction, including language use. When referring back to a referent in discourse, this referent is ‘given information’ and therefore in the interactants’ common ground. When a referent is being referred to for the first time, a speaker introduces ‘new information’. The analyses reported here are on gestures that accompany such references when they include definite and indefinite grammatical determiners. The main finding from these analyses is that referents referred to by definite and indefinite articles were equally often accompanied by gesture, but speakers tended to accompany definite references with gestures focusing on action information and indefinite references with gestures focusing on entity information. The findings suggest that speakers use speech and gesture together to design utterances appropriate for speakers with whom they share common ground.

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  • Wilkinson, G. S., Adams, D. M., Haghani, A., Lu, A. T., Zoller, J., Breeze, C. E., Arnold, B. D., Ball, H. C., Carter, G. G., Cooper, L. N., Dechmann, D. K. N., Devanna, P., Fasel, N. J., Galazyuk, A. V., Günther, L., Hurme, E., Jones, G., Knörnschild, M., Lattenkamp, E. Z., Li, C. Z. and 17 moreWilkinson, G. S., Adams, D. M., Haghani, A., Lu, A. T., Zoller, J., Breeze, C. E., Arnold, B. D., Ball, H. C., Carter, G. G., Cooper, L. N., Dechmann, D. K. N., Devanna, P., Fasel, N. J., Galazyuk, A. V., Günther, L., Hurme, E., Jones, G., Knörnschild, M., Lattenkamp, E. Z., Li, C. Z., Mayer, F., Reinhardt, J. A., Medellin, R. A., Nagy, M., Pope, B., Power, M. L., Ransome, R. D., Teeling, E. C., Vernes, S. C., Zamora-Mejías, D., Zhang, J., Faure, P. A., Greville, L. J., Herrera M., L. G., Flores-Martínez, J. J., & Horvath, S. (2021). DNA methylation predicts age and provides insight into exceptional longevity of bats. Nature Communications, 12: 1615. doi:10.1038/s41467-021-21900-2.

    Abstract

    Exceptionally long-lived species, including many bats, rarely show overt signs of aging, making it difficult to determine why species differ in lifespan. Here, we use DNA methylation (DNAm) profiles from 712 known-age bats, representing 26 species, to identify epigenetic changes associated with age and longevity. We demonstrate that DNAm accurately predicts chronological age. Across species, longevity is negatively associated with the rate of DNAm change at age-associated sites. Furthermore, analysis of several bat genomes reveals that hypermethylated age- and longevity-associated sites are disproportionately located in promoter regions of key transcription factors (TF) and enriched for histone and chromatin features associated with transcriptional regulation. Predicted TF binding site motifs and enrichment analyses indicate that age-related methylation change is influenced by developmental processes, while longevity-related DNAm change is associated with innate immunity or tumorigenesis genes, suggesting that bat longevity results from augmented immune response and cancer suppression.

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