Publications

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  • Kunert, R., & Scheepers, C. (2014). Speed and accuracy of dyslexic versus typical word recognition: An eye-movement investigation. Frontiers in Psychology, 5: 1129. doi:10.3389/fpsyg.2014.01129.

    Abstract

    Developmental dyslexia is often characterized by a dual deficit in both word recognition accuracy and general processing speed. While previous research into dyslexic word recognition may have suffered from speed-accuracy trade-off, the present study employed a novel eye-tracking task that is less prone to such confounds. Participants (10 dyslexics and 12 controls) were asked to look at real word stimuli, and to ignore simultaneously presented non-word stimuli, while their eye-movements were recorded. Improvements in word recognition accuracy over time were modeled in terms of a continuous non-linear function. The words' rhyme consistency and the non-words' lexicality (unpronounceable, pronounceable, pseudohomophone) were manipulated within-subjects. Speed-related measures derived from the model fits confirmed generally slower processing in dyslexics, and showed a rhyme consistency effect in both dyslexics and controls. In terms of overall error rate, dyslexics (but not controls) performed less accurately on rhyme-inconsistent words, suggesting a representational deficit for such words in dyslexics. Interestingly, neither group showed a pseudohomophone effect in speed or accuracy, which might call the task-independent pervasiveness of this effect into question. The present results illustrate the importance of distinguishing between speed- vs. accuracy-related effects for our understanding of dyslexic word recognition

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    Kunert_Data Sheet 1.DOCX
  • Kupisch, T., Lein, T., Barton, D., Schröder, D. J., Stangen, I., & Stoehr, A. (2014). Acquisition outcomes across domains in adult simultaneous bilinguals with French as weaker and stronger language. Journal of French Language Studies, 24(3), 347-376. doi:10.1017/S0959269513000197.

    Abstract

    This study investigates the adult grammars of French simultaneous bilingual speakers (2L1s) whose other language is German. Apart from providing an example of French as heritage language in Europe, the goals of this paper are (i) to compare the acquisition of French in a minority and majority language context, (ii) to identify the relative vulnerability of individual domains, and (iii) to investigate whether 2L1s are vulnerable to language attrition when moving to their heritage country during adulthood. We include two groups of German-French 2L1s: One group grew up predominantly in France, but moved to Germany during adulthood; the other group grew up predominantly in Germany and stayed there. Performance is compared in different domains, including adjective placement, gender marking, articles, prepositions, foreign accent and voice onset time. Results indicate that differences between the two groups are minimal in morpho-syntax, but more prominent in pronunciation.
  • Kurt, S., Groszer, M., Fisher, S. E., & Ehret, G. (2009). Modified sound-evoked brainstem potentials in Foxp2 mutant mice. Brain Research, 1289, 30-36. doi:10.1016/j.brainres.2009.06.092.

    Abstract

    Heterozygous mutations of the human FOXP2 gene cause a developmental disorder involving impaired learning and production of fluent spoken language. Previous investigations of its aetiology have focused on disturbed function of neural circuits involved in motor control. However, Foxp2 expression has been found in the cochlea and auditory brain centers and deficits in auditory processing could contribute to difficulties in speech learning and production. Here, we recorded auditory brainstem responses (ABR) to assess two heterozygous mouse models carrying distinct Foxp2 point mutations matching those found in humans with FOXP2-related speech/language impairment. Mice which carry a Foxp2-S321X nonsense mutation, yielding reduced dosage of Foxp2 protein, did not show systematic ABR differences from wildtype littermates. Given that speech/language disorders are observed in heterozygous humans with similar nonsense mutations (FOXP2-R328X), our findings suggest that auditory processing deficits up to the midbrain level are not causative for FOXP2-related language impairments. Interestingly, however, mice harboring a Foxp2-R552H missense mutation displayed systematic alterations in ABR waves with longer latencies (significant for waves I, III, IV) and smaller amplitudes (significant for waves I, IV) suggesting that either the synchrony of synaptic transmission in the cochlea and in auditory brainstem centers is affected, or fewer auditory nerve fibers and fewer neurons in auditory brainstem centers are activated compared to wildtypes. Therefore, the R552H mutation uncovers possible roles for Foxp2 in the development and/or function of the auditory system. Since ABR audiometry is easily accessible in humans, our data call for systematic testing of auditory functions in humans with FOXP2 mutations.
  • Kushnick, G., Gray, R., & Jordan, F. (2014). The sequential evolution of land tenure norms. Evolution and Human Behavior, 35, 309-318. doi:10.1016/j.evolhumbehav.2014.03.001.
  • Lahey, M., & Ernestus, M. (2014). Pronunciation variation in infant-directed speech: Phonetic reduction of two highly frequent words. Language Learning and Development, 10, 308-327. doi:10.1080/15475441.2013.860813.

    Abstract

    In spontaneous conversations between adults, words are often pronounced with fewer segments or syllables than their citation forms. The question arises whether infant-directed speech also contains phonetic reduction. If so, infants would be presented with speech input that enables them to acquire reduced variants from an early age. This study compared speech directed at 11- and 12-month-old infants with adult-directed conversational speech and adult-directed read speech. In an acoustic study, 216 tokens of the Dutch words allemaal and helemaal from speech corpora were analyzed for duration, number of syllables, and vowel quality. In a perception study, adult participants rated these same materials for reduction and provided phonetic transcriptions. The results show that these two words are frequently reduced in infant-directed speech, and that their degree of reduction is comparable with conversational adult-directed speech. These findings suggest that lexical representations for reduced pronunciation variants can be acquired early in linguistic development

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  • Lai, V. T., Curran, T., & Menn, L. (2009). Comprehending conventional and novel metaphors: An ERP study. Brain Research, 1284, 145-155. doi:10.1016/j.brainres.2009.05.088.
  • Lai, V. T., Garrido Rodriguez, G., & Narasimhan, B. (2014). Thinking-for-speaking in early and late bilinguals. Bilingualism: Language and Cognition, 17, 139-152. doi:10.1017/S1366728913000151.

    Abstract

    When speakers describe motion events using different languages, they subsequently classify those events in language-specific ways (Gennari, Sloman, Malt & Fitch, 2002). Here we ask if bilingual speakers flexibly shift their event classification preferences based on the language in which they verbally encode those events. English–Spanish bilinguals and monolingual controls described motion events in either Spanish or English. Subsequently they judged the similarity of the motion events in a triad task. Bilinguals tested in Spanish and Spanish monolinguals were more likely to make similarity judgments based on the path of motion versus bilinguals tested in English and English monolinguals. The effect is modulated in bilinguals by the age of acquisition of the second language. Late bilinguals based their judgments on path more often when Spanish was used to describe the motion events versus English. Early bilinguals had a path preference independent of the language in use. These findings support “thinking-for-speaking” (Slobin, 1996) in late bilinguals.
  • De Lange, F. P., Koers, A., Kalkman, J. S., Bleijenberg, G., Hagoort, P., Van der Meer, J. W. M., & Toni, I. (2009). Reply to: "Can CBT substantially change grey matter volume in chronic fatigue syndrome" [Letter to the editor]. Brain, 132(6), e111. doi:10.1093/brain/awn208.
  • De Lange, F., Bleijenberg, G., Van der Meer, J. W. M., Hagoort, P., & Toni, I. (2009). Reply: Change in grey matter volume cannot be assumed to be due to cognitive behavioural therapy [Letter to the editor]. Brain, 132(7), e120. doi:10.1093/brain/awn359.
  • De Lange, F. P., Knoop, H., Bleijenberg, G., Van der Meer, J. W. M., Hagoort, P., & Toni, I. (2009). The experience of fatigue in the brain [Letter to the editor]. Psychological Medicine, 39, 523-524. doi:10.1017/S0033291708004844.
  • Lartseva, A., Dijkstra, T., Kan, C. C., & Buitelaar, J. K. (2014). Processing of emotion words by patients with Autism Spectrum Disorders: Evidence from reaction times and EEG. Journal of Autism and Developmental Disorders, 44, 2882-2894. doi:10.1007/s10803-014-2149-z.

    Abstract

    This study investigated processing of emotion words in autism spectrum disorders (ASD) using reaction times and event-related potentials (ERP). Adults with (n = 21) and without (n = 20) ASD performed a lexical decision task on emotion and neutral words while their brain activity was recorded. Both groups showed faster responses to emotion words compared to neutral, suggesting intact early processing of emotion in ASD. In the ERPs, the control group showed a typical late positive component (LPC) at 400-600 ms for emotion words compared to neutral, while the ASD group showed no LPC. The between-group difference in LPC amplitude was significant, suggesting that emotion words were processed differently by individuals with ASD, although their behavioral performance was similar to that of typical individuals
  • Lattenkamp, E. Z., Hörpel, S. G., Mengede, J., & Firzlaff, U. (2021). A researcher’s guide to the comparison of vocal production learning. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 376: 20200237. doi:10.1098/rstb.2020.0237.

    Abstract

    Vocal production learning (VPL) is the capacity to learn to produce new vocalizations, which is a rare ability in the animal kingdom and thus far has only been identified in a handful of mammalian taxa and three groups of birds. Over the last few decades, approaches to the demonstration of VPL have varied among taxa, sound production systems and functions. These discrepancies strongly impede direct comparisons between studies. In the light of the growing number of experimental studies reporting VPL, the need for comparability is becoming more and more pressing. The comparative evaluation of VPL across studies would be facilitated by unified and generalized reporting standards, which would allow a better positioning of species on any proposed VPL continuum. In this paper, we specifically highlight five factors influencing the comparability of VPL assessments: (i) comparison to an acoustic baseline, (ii) comprehensive reporting of acoustic parameters, (iii) extended reporting of training conditions and durations, (iv) investigating VPL function via behavioural, perception-based experiments and (v) validation of findings on a neuronal level. These guidelines emphasize the importance of comparability between studies in order to unify the field of vocal learning.
  • Lattenkamp, E. Z., Linnenschmidt, M., Mardus, E., Vernes, S. C., Wiegrebe, L., & Schutte, M. (2021). The vocal development of the pale spear-nosed bat is dependent on auditory feedback. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 376: 20200253. doi:10.1098/rstb.2020.0253.

    Abstract

    Human vocal development and speech learning require acoustic feedback, and
    humans who are born deaf do not acquire a normal adult speech capacity. Most
    other mammals display a largely innate vocal repertoire. Like humans, bats are
    thought to be one of the few taxa capable of vocal learning as they can acquire
    new vocalizations by modifying vocalizations according to auditory experiences.
    We investigated the effect of acoustic deafening on the vocal development of the
    pale spear-nosed bat. Three juvenile pale spear-nosed bats were deafened, and
    their vocal development was studied in comparison with an age-matched, hear-
    ing control group. The results show that during development the deafened bats
    increased their vocal activity, and their vocalizations were substantially altered,
    being much shorter, higher in pitch, and more aperiodic than the vocalizations
    of the control animals. The pale spear-nosed bat relies on auditory feedback
    for vocal development and, in the absence of auditory input, species-atypical
    vocalizations are acquired. This work serves as a basis for further research
    using the pale spear-nosed bat as a mammalian model for vocal learning, and
    contributes to comparative studies on hearing impairment across species.
    This article is part of the theme issue ‘Vocal learning in animals and
    humans’.
  • Lattenkamp, E. Z., Nagy, M., Drexl, M., Vernes, S. C., Wiegrebe, L., & Knörnschild, M. (2021). Hearing sensitivity and amplitude coding in bats are differentially shaped by echolocation calls and social calls. Proceedings of the Royal Society B: Biological Sciences, 288(1942): 20202600. doi:10.1098/rspb.2020.2600.

    Abstract

    Differences in auditory perception between species are influenced by phylogenetic origin and the perceptual challenges imposed by the natural environment, such as detecting prey- or predator-generated sounds and communication signals. Bats are well suited for comparative studies on auditory perception since they predominantly rely on echolocation to perceive the world, while their social calls and most environmental sounds have low frequencies. We tested if hearing sensitivity and stimulus level coding in bats differ between high and low-frequency ranges by measuring auditory brainstem responses (ABRs) of 86 bats belonging to 11 species. In most species, auditory sensitivity was equally good at both high- and low-frequency ranges, while amplitude was more finely coded for higher frequency ranges. Additionally, we conducted a phylogenetic comparative analysis by combining our ABR data with published data on 27 species. Species-specific peaks in hearing sensitivity correlated with peak frequencies of echolocation calls and pup isolation calls, suggesting that changes in hearing sensitivity evolved in response to frequency changes of echolocation and social calls. Overall, our study provides the most comprehensive comparative assessment of bat hearing capacities to date and highlights the evolutionary pressures acting on their sensory perception.

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  • Lausberg, H., & Sloetjes, H. (2009). Coding gestural behavior with the NEUROGES-ELAN system. Behavior Research Methods, Instruments, & Computers, 41(3), 841-849. doi:10.3758/BRM.41.3.841.

    Abstract

    We present a coding system combined with an annotation tool for the analysis of gestural behavior. The NEUROGES coding system consists of three modules that progress from gesture kinetics to gesture function. Grounded on empirical neuropsychological and psychological studies, the theoretical assumption behind NEUROGES is that its main kinetic and functional movement categories are differentially associated with specific cognitive, emotional, and interactive functions. ELAN is a free, multimodal annotation tool for digital audio and video media. It supports multileveled transcription and complies with such standards as XML and Unicode. ELAN allows gesture categories to be stored with associated vocabularies that are reusable by means of template files. The combination of the NEUROGES coding system and the annotation tool ELAN creates an effective tool for empirical research on gestural behavior.
  • Law, R., & Pylkkänen, L. (2021). Lists with and without syntax: A new approach to measuring the neural processing of syntax. The Journal of Neuroscience, 41(10), 2186-2196. doi:10.1523/JNEUROSCI.1179-20.2021.

    Abstract

    In the neurobiology of language, a fundamental challenge is deconfounding syntax from semantics. Changes in syntactic structure usually correlate with changes in meaning. We approached this challenge from a new angle. We deployed word lists, which are usually the unstructured control in studies of syntax, as both the test and the control stimulus. Three-noun lists (lamps, dolls, guitars) were embedded in sentences (The eccentric man hoarded lamps, dolls, guitars…) and in longer lists (forks, pen, toilet, rodeo, graves, drums, mulch, lamps, dolls, guitars…). This allowed us to perfectly control both lexical characteristics and local combinatorics: the same words occurred in both conditions and in neither case did the list items locally compose into phrases (e.g. ‘lamps’ and ‘dolls’ do not form a phrase). But in one case, the list partakes in a syntactic tree, while in the other, it does not. Being embedded inside a syntactic tree increased source-localized MEG activity at ~250-300ms from word onset in the left inferior frontal cortex, at ~300-350ms in the left anterior temporal lobe and, most reliably, at ~330-400ms in left posterior temporal cortex. In contrast, effects of semantic association strength, which we also varied, localized in left temporo-parietal cortex, with high associations increasing activity at around 400ms. This dissociation offers a novel characterization of the structure vs. meaning contrast in the brain: The fronto-temporal network that is familiar from studies of sentence processing can be driven by the sheer presence of global sentence structure, while associative semantics has a more posterior neural signature.

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    Link to Preprint on BioRxiv
  • Lemen, H., Lieven, E., & Theakston, A. (2021). A comparison of the pragmatic patterns in the spontaneous because- and if-sentences produced by children and their caregivers. Journal of Pragmatics, 185, 15-34. doi:10.1016/j.pragma.2021.07.016.

    Abstract

    Findings from corpus (e.g. Diessel, 2004) and comprehension (e.g. De Ruiter et al., 2018) studies show that children produce the adverbial connectives because and if long before they seem able to understand them. However, although children's comprehension is typically tested on sentences expressing the pragmatic relationship which Sweetser (1990) calls “Content”, children also hear and produce sentences expressing “Speech–Act” relationships (e.g. De Ruiter et al., 2021; Kyratzis et al., 1990). To better understand the possible influence of pragmatic variation on 2- to 4- year-old children's acquisition of these connectives, we coded the because and if Speech–Act sentences of 14 British English-speaking mother-child dyads for the type of illocutionary act they contained, as well as the phrasing following the connective. Analyses revealed that children's because Speech–Act sentences were primarily explanations of Statements/Claims, while their if Speech–Act sentences typically related to permission and politeness. While children's because-sentences showed a great deal of individuality, their if-sentences closely resembled their mothers’, containing a high proportion of recurring phrases which appear to be abstracted from input. We discuss how these patterns might help shape children's understanding of each connective and contribute to the children's overall difficulty with because and if.
  • Lemhoefer, K., Schriefers, H., & Indefrey, P. (2014). Idiosyncratic Grammars: Syntactic Processing in Second Language Comprehension Uses Subjective Feature Representations. Journal of Cognitive Neuroscience, 26(7), 1428-1444. doi:10.1162/jocn_a_00609.

    Abstract

    Learning the syntax of a second language (L2) often represents a big challenge to L2 learners. Previous research on syntactic processing in L2 has mainly focused on how L2 speakers respond to "objective" syntactic violations, that is, phrases that are incorrect by native standards. In this study, we investigate how L2 learners, in particular those of less than near-native proficiency, process phrases that deviate from their own, "subjective," and often incorrect syntactic representations, that is, whether they use these subjective and idiosyncratic representations during sentence comprehension. We study this within the domain of grammatical gender in a population of German learners of Dutch, for which systematic errors of grammatical gender are well documented. These L2 learners as well as a control group of Dutch native speakers read Dutch sentences containing gender-marked determinernoun phrases in which gender agreement was either (objectively) correct or incorrect. Furthermore, the noun targets were selected such that, in a high proportion of nouns, objective and subjective correctness would differ for German learners. The ERP results show a syntactic violation effect (P600) for objective gender agreement violations for native, but not for nonnative speakers. However, when the items were re-sorted for the L2 speakers according to subjective correctness (as assessed offline), the P600 effect emerged as well. Thus, rather than being insensitive to violations of gender agreement, L2 speakers are similarly sensitive as native speakers but base their sensitivity on their subjective-sometimes incorrect-representations.

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  • Lensink, S. E., Verdonschot, R. G., & Schiller, N. O. (2014). Morphological priming during language switching: An ERP study. Frontiers in Human Neuroscience, 8: 995. doi:10.3389/fnhum.2014.00995.

    Abstract

    Bilingual language control (BLC) is a much-debated issue in recent literature. Some models assume BLC is achieved by various types of inhibition of the non-target language, whereas other models do not assume any inhibitory mechanisms. In an event-related potential (ERP) study involving a long-lag morphological priming paradigm, participants were required to name pictures and read aloud words in both their L1 (Dutch) and L2 (English). Switch blocks contained intervening L1 items between L2 primes and targets, whereas non-switch blocks contained only L2 stimuli. In non-switch blocks, target picture names that were morphologically related to the primes were named faster than unrelated control items. In switch blocks, faster response latencies were recorded for morphologically related targets as well, demonstrating the existence of morphological priming in the L2. However, only in non-switch blocks, ERP data showed a reduced N400 trend, possibly suggesting that participants made use of a post-lexical checking mechanism during the switch block.
  • Lev-Ari, S., & Peperkamp, S. (2014). An experimental study of the role of social factors in sound change. Laboratory Phonology, 5(3), 379-401. doi:10.1515/lp-2014-0013.

    Abstract

    There is great variation in whether foreign sounds in loanwords are adapted or retained. Importantly, the retention of foreign sounds can lead to a sound change in the language. We propose that social factors influence the likelihood of loanword sound adaptation, and use this case to introduce a novel experimental paradigm for studying language change that captures the role of social factors. Specifically, we show that the relative prestige of the donor language in the loanword's semantic domain influences the rate of sound adaptation. We further show that speakers adapt to the performance of their ‘community’, and that this adaptation leads to the creation of a norm. The results of this study are thus the first to show an effect of social factors on loanword sound adaptation in an experimental setting. Moreover, they open up a new domain of experimentally studying language change in a manner that integrates social factors
  • Lev-Ari, S., & Keysar, B. (2014). Executive control influences linguistic representations. Memory & Cognition, 42(2), 247-263. doi:10.3758/s13421-013-0352-3.

    Abstract

    Although it is known that words acquire their meanings partly from the contexts in which they are used, we proposed that the way in which words are processed can also influence their representation. We further propose that individual differences in the way that words are processed can consequently lead to individual differences in the way that they are represented. Specifically, we showed that executive control influences linguistic representations by influencing the coactivation of competing and reinforcing terms. Consequently, people with poorer executive control perceive the meanings of homonymous terms as being more similar to one another, and those of polysemous terms as being less similar to one another, than do people with better executive control. We also showed that bilinguals with poorer executive control experience greater cross-linguistic interference than do bilinguals with better executive control. These results have implications for theories of linguistic representation and language organization.
  • Lev-Ari, S., San Giacomo, M., & Peperkamp, S. (2014). The effect of domain prestige and interlocutors’ bilingualism on sound adaptation. Journal of Sociolinguistics, 18(5), 658-684. doi:10.1111/josl.12102.

    Abstract

    There is great variability in whether foreign sounds in loanwords are adapted, such that segments show cross-word and cross-situational variation in adaptation. Previous research proposed that word frequency, speakers' level of bilingualism and neighborhoods' level of bilingualism can explain such variability. We test for the effect of these factors and propose two additional factors: interlocutors' level of bilingualism and the prestige of the donor language in the loanword's domain. Analyzing elicited productions of loanwords from Spanish into Mexicano in a village where Spanish and Mexicano enjoy prestige in complementary domains, we show that interlocutors' bilingualism and prestige influence the rate of sound adaptation. Additionally, we find that speakers accommodate to their interlocutors, regardless of the interlocutors' level of bilingualism. As retention of foreign sounds can lead to sound change, these results show that social factors can influence changes in a language's sound system.
  • Lev-Ari, S., & Peperkamp, S. (2014). The influence of inhibitory skill on phonological representations in production and perception. Journal of Phonetics, 47, 36-46. doi:10.1016/j.wocn.2014.09.001.

    Abstract

    Inhibition is known to play a role in speech perception and has been hypothesized to likewise influence speech production. In this paper we test whether individual differences in inhibitory skill can lead to individual differences in phonological representations in perception and production. We further examine whether the type of inhibition that influences phonological representation is domain-specific or domain-general. Native French speakers read aloud sentences with words containing a voiced stop that either have a voicing neighbor (target) or not (control). The duration of pre-voicing was measured. Participants similarly performed a lexical decision task on versions of these target and matched control words whose pre-voicing duration was manipulated. Lastly, participants performed linguistic and non-linguistic inhibition tasks. Results indicate that the lower speakers' linguistic or non-linguistic inhibition is, the easier it is for them to recognize words with a voiceless neighbor when these words have a shorter, intermediate, pre-voicing rather than a longer one. Inhibitory skill did not predict recognition time for control words, indicating that the effect was due to the greater activation of the voiceless neighbor. Inhibition did not predict pre-voicing duration in production. These results indicate that individual differences in cognitive skills can influence phonological representations in speech perception.
  • Levelt, W. J. M. (1991). Die konnektionistische Mode. Sprache und Kognition, 10(2), 61-72.
  • Levelt, W. J. M. (1997). Kunnen lezen is ongewoon voor horenden en doven. Tijdschrift voor Jeugdgezondheidszorg, 29(2), 22-25.
  • Levelt, W. J. M., Schriefers, H., Vorberg, D., Meyer, A. S., Pechmann, T., & Havinga, J. (1991). Normal and deviant lexical processing: Reply to Dell and O'Seaghdha. Psychological Review, 98(4), 615-618. doi:10.1037/0033-295X.98.4.615.

    Abstract

    In their comment, Dell and O'Seaghdha (1991) adduced any effect on phonological probes for semantic alternatives to the activation of these probes in the lexical network. We argue that that interpretation is false and, in addition, that the model still cannot account for our data. Furthermore, and different from Dell and O'seaghda, we adduce semantic rebound to the lemma level, where it is so substantial that it should have shown up in our data. Finally, we question the function of feedback in a lexical network (other than eliciting speech errors) and discuss Dell's (1988) notion of a unified production-comprehension system.
  • Levelt, W. J. M. (1988). Onder sociale wetenschappen. Mededelingen van de Afdeling Letterkunde, 51(2), 41-55.
  • Levelt, W. J. M. (1984). Sprache und Raum. Texten und Schreiben, 20, 18-21.
  • Levelt, W. J. M., Schreuder, R., & Hoenkamp, E. (1976). Struktur und Gebrauch von Bewegungsverben. Zeitschrift für Literaturwissenschaft und Linguistik, 6(23/24), 131-152.
  • Levelt, W. J. M., Schriefer, H., Vorberg, D., Meyer, A. S., Pechmann, T., & Havinga, J. (1991). The time course of lexical access in speech production: A study of picture naming. Psychological Review, 98(1), 122-142. doi:10.1037/0033-295X.98.1.122.
  • Levinson, S. C., & Majid, A. (2014). Differential ineffability and the senses. Mind & Language, 29, 407-427. doi:10.1111/mila.12057.

    Abstract

    neffability, the degree to which percepts or concepts resist linguistic coding, is a fairly unexplored nook of cognitive science. Although philosophical preoccupations with qualia or nonconceptual content certainly touch upon the area, there has been little systematic thought and hardly any empirical work in recent years on the subject. We argue that ineffability is an important domain for the cognitive sciences. For examining differential ineffability across the senses may be able to tell us important things about how the mind works, how different modalities talk to one another, and how language does, or does not, interact with other mental faculties.
  • Levinson, S. C., & Senft, G. (1991). Forschungsgruppe für Kognitive Anthropologie - Eine neue Forschungsgruppe in der Max-Planck-Gesellschaft. Linguistische Berichte, 133, 244-246.
  • Levinson, S. C. (1987). Implicature explicated? [Comment on Sperber and Wilson]. Behavioral and Brain Sciences, 10(4), 722-723.

    Abstract

    Comment on Sperber and Wilson
  • Levinson, S. C. (1997). Language and cognition: The cognitive consequences of spatial description in Guugu Yimithirr. Journal of Linguistic Anthropology, 7(1), 98-131. doi:10.1525/jlin.1997.7.1.98.

    Abstract

    This article explores the relation between language and cognition by examining the case of "absolute" (cardinal direction) spatial description in the Australian aboriginal language Guugu Yimithirr. This kind of spatial description is incongruent with the "relative" (e.g., left/right/front/back) spatial description familiar in European languages. Building on Haviland's 1993 analysis of Guugu Yimithirr directionals in speech and gesture, a series of informal experiments were developed. It is shown that Guugu Yimithirr speakers predominantly code for nonverbal memory in "absolute" concepts congruent with their language, while a comparative sample of Dutch speakers do so in "relative" concepts. Much anecdotal evidence also supports this. The conclusion is that Whorfian effects may in fact be demonstrable in the spatial domain.
  • Levinson, S. C. (1997). Language and cognition: The cognitive consequences of spatial description in Guugu Yimithirr. Journal of Linguistic Anthropology, 7(1), 1-35. doi:10.1525/jlin.1997.7.1.98.
  • Levinson, S. C. (2014). Language and Wallace's problem [Review of the books More than nature needs: Language, mind and evolution by D. Bickerton and A natural history of human thinking by M. Tomasello]. Science, 344, 1458-1459. doi:10.1126/science.1252988.
  • Levinson, S. C., & Senft, G. (1991). Research group for cognitive anthropology - A new research group of the Max Planck Society. Cognitive Linguistics, 2, 311-312.
  • Levinson, S. C., & Burenhult, N. (2009). Semplates: A new concept in lexical semantics? Language, 85, 153-174. doi:10.1353/lan.0.0090.

    Abstract

    This short report draws attention to an interesting kind of configuration in the lexicon that seems to have escaped theoretical or systematic descriptive attention. These configurations, which we dub SEMPLATES, consist of an abstract structure or template, which is recurrently instantiated in a number of lexical sets, typically of different form classes. A number of examples from different language families are adduced, and generalizations made about the nature of semplates, which are contrasted to other, perhaps similar, phenomena
  • Levinson, S. C. (1991). Pragmatic reduction of the Binding Conditions revisited. Journal of Linguistics, 27, 107-161. doi:10.1017/S0022226700012433.

    Abstract

    In an earlier article (Levinson, 1987b), I raised the possibility that a Gricean theory of implicature might provide a systematic partial reduction of the Binding Conditions; the briefest of outlines is given in Section 2.1 below but the argumentation will be found in the earlier article. In this article I want, first, to show how that account might be further justified and extended, but then to introduce a radical alternative. This alternative uses the same pragmatic framework, but gives an account better adjusted to some languages. Finally, I shall attempt to show that both accounts can be combined by taking a diachronic perspective. The attraction of the combined account is that, suddenly, many facts about long-range reflexives and their associated logophoricity fall into place.
  • Levinson, S. C. (1987). Pragmatics and the grammar of anaphora: A partial pragmatic reduction of Binding and Control phenomena. Journal of Linguistics, 23, 379-434. doi:10.1017/S0022226700011324.

    Abstract

    This paper is one in a series that develops a pragmatic framework in loose confederation with Jay Atlas and Larry Horn: thus they may or may not be responsible for the ideas contained herein. Jay Atlas provided many comments which I have utilized or perverted as the case may be. The Australian data to which this framework is applied was collected with the financial and personal assistance of many people and agencies acknowledged separately below; but I must single out for special thanks John Haviland, who recommended the study of Guugu Yimidhirr anaphora to me and upon whose grammatical work on Guugu Yimidhirr this paper is but a minor (and perhaps flawed) elaboration. A grant from the British Academy allowed me to visit Haviland in September 1986 to discuss many aspects of Guugu Yimidhirr with him, and I am most grateful to the Academy for funding this trip and to Haviland for generously making available his time, his texts (from which I have drawn many examples, not always with specific acknowledgement) and most especially his expertise. Where I have diverged from his opinion I may well learn to regret it. I must also thank Nigel Vincent for putting me in touch with a number of recent relevant developments in syntax (only some of which I have been able to address) and for suggestions for numerous improvements. In addition, I have benefited immensely for comments on a distinct but related paper (Levinson, 1987) kindly provided by Jay Atlas, John Haviland, John Heritage, Phil Johnson-Laird, John Lyons, Tanya Reinhart, Emanuel Schegloff and an anonymous referee; and from comments on this paper by participants in the Cambridge Linguistics Department seminar where it was first presented (especial thanks to John Lyons and Huang Yan for further comments, and Mary Smith for a counter-example). Despite all this help, there are sure to be errors of data and analysis that I have persisted in. Aid in gathering the Australian data is acknowledged separately below.
  • Levinson, S. C., & Holler, J. (2014). The origin of human multi-modal communication. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 369(1651): 2013030. doi:10.1098/rstb.2013.0302.

    Abstract

    One reason for the apparent gulf between animal and human communication systems is that the focus has been on the presence or the absence of language as a complex expressive system built on speech. But language normally occurs embedded within an interactional exchange of multi-modal signals. If this larger perspective takes central focus, then it becomes apparent that human communication has a layered structure, where the layers may be plausibly assigned different phylogenetic and evolutionary origins—especially in the light of recent thoughts on the emergence of voluntary breathing and spoken language. This perspective helps us to appreciate the different roles that the different modalities play in human communication, as well as how they function as one integrated system despite their different roles and origins. It also offers possibilities for reconciling the ‘gesture-first hypothesis’ with that of gesture and speech having evolved together, hand in hand—or hand in mouth, rather—as one system.
  • Levshina, N. (2021). Cross-linguistic trade-offs and causal relationships between cues to grammatical subject and object, and the problem of efficiency-related explanations. Frontiers in Psychology, 12: 648200. doi:10.3389/fpsyg.2021.648200.

    Abstract

    Cross-linguistic studies focus on inverse correlations (trade-offs) between linguistic variables that reflect different cues to linguistic meanings. For example, if a language has no case marking, it is likely to rely on word order as a cue for identification of grammatical roles. Such inverse correlations are interpreted as manifestations of language users’ tendency to use language efficiently. The present study argues that this interpretation is problematic. Linguistic variables, such as the presence of case, or flexibility of word order, are aggregate properties, which do not represent the use of linguistic cues in context directly. Still, such variables can be useful for circumscribing the potential role of communicative efficiency in language evolution, if we move from cross-linguistic trade-offs to multivariate causal networks. This idea is illustrated by a case study of linguistic variables related to four types of Subject and Object cues: case marking, rigid word order of Subject and Object, tight semantics and verb-medial order. The variables are obtained from online language corpora in thirty languages, annotated with the Universal Dependencies. The causal model suggests that the relationships between the variables can be explained predominantly by sociolinguistic factors, leaving little space for a potential impact of efficient linguistic behavior.
  • Levshina, N., & Moran, S. (2021). Efficiency in human languages: Corpus evidence for universal principles. Linguistics Vanguard, 7(s3): 20200081. doi:10.1515/lingvan-2020-0081.

    Abstract

    Over the last few years, there has been a growing interest in communicative efficiency. It has been argued that language users act efficiently, saving effort for processing and articulation, and that language structure and use reflect this tendency. The emergence of new corpus data has brought to life numerous studies on efficient language use in the lexicon, in morphosyntax, and in discourse and phonology in different languages. In this introductory paper, we discuss communicative efficiency in human languages, focusing on evidence of efficient language use found in multilingual corpora. The evidence suggests that efficiency is a universal feature of human language. We provide an overview of different manifestations of efficiency on different levels of language structure, and we discuss the major questions and findings so far, some of which are addressed for the first time in the contributions in this special collection.
  • Levshina, N., & Moran, S. (Eds.). (2021). Efficiency in human languages: Corpus evidence for universal principles [Special Issue]. Linguistics Vanguard, 7(s3).
  • Levshina, N. (2021). Communicative efficiency and differential case marking: A reverse-engineering approach. Linguistics Vanguard, 7(s3): 20190087. doi:10.1515/lingvan-2019-0087.
  • Levy, J., Hagoort, P., & Démonet, J.-F. (2014). A neuronal gamma oscillatory signature during morphological unification in the left occipitotemporal junction. Human Brain Mapping, 35, 5847-5860. doi:10.1002/hbm.22589.

    Abstract

    Morphology is the aspect of language concerned with the internal structure of words. In the past decades, a large body of masked priming (behavioral and neuroimaging) data has suggested that the visual word recognition system automatically decomposes any morphologically complex word into a stem and its constituent morphemes. Yet the reliance of morphology on other reading processes (e.g., orthography and semantics), as well as its underlying neuronal mechanisms are yet to be determined. In the current magnetoencephalography study, we addressed morphology from the perspective of the unification framework, that is, by applying the Hold/Release paradigm, morphological unification was simulated via the assembly of internal morphemic units into a whole word. Trials representing real words were divided into words with a transparent (true) or a nontransparent (pseudo) morphological relationship. Morphological unification of truly suffixed words was faster and more accurate and additionally enhanced induced oscillations in the narrow gamma band (60–85 Hz, 260–440 ms) in the left posterior occipitotemporal junction. This neural signature could not be explained by a mere automatic lexical processing (i.e., stem perception), but more likely it related to a semantic access step during the morphological unification process. By demonstrating the validity of unification at the morphological level, this study contributes to the vast empirical evidence on unification across other language processes. Furthermore, we point out that morphological unification relies on the retrieval of lexical semantic associations via induced gamma band oscillations in a cerebral hub region for visual word form processing.
  • Lewis, A., Freeman-Mills, L., de la Calle-Mustienes, E., Giráldez-Pérez, R. M., Davis, H., Jaeger, E., Becker, M., Hubner, N. C., Nguyen, L. N., Zeron-Medina, J., Bond, G., Stunnenberg, H. G., Carvajal, J. J., Gomez-Skarmeta, J. L., Leedham, S., & Tomlinson, I. (2014). A polymorphic enhancer near GREM1 influences bowel cancer risk through diifferential CDX2 and TCF7L2 binding. Cell Reports, 8(4), Pages 983-990. doi:10.1016/j.celrep.2014.07.020.

    Abstract

    A rare germline duplication upstream of the bone morphogenetic protein antagonist GREM1 causes a Mendelian-dominant predisposition to colorectal cancer (CRC). The underlying disease mechanism is strong, ectopic GREM1 overexpression in the intestinal epithelium. Here, we confirm that a common GREM1 polymorphism, rs16969681, is also associated with CRC susceptibility, conferring ∼20% differential risk in the general population. We hypothesized the underlying cause to be moderate differences in GREM1 expression. We showed that rs16969681 lies in a region of active chromatin with allele- and tissue-specific enhancer activity. The CRC high-risk allele was associated with stronger gene expression, and higher Grem1 mRNA levels increased the intestinal tumor burden in ApcMin mice. The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound near rs16969681, with significantly higher affinity for the risk allele, and CDX2 overexpression in CDX2/GREM1-negative cells caused re-expression of GREM1. rs16969681 influences CRC risk through effects on Wnt-driven GREM1 expression in colorectal tumors.
  • Lieber, R., & Baayen, R. H. (1997). A semantic principle of auxiliary selection in Dutch. Natural Language & Linguistic Theory, 15(4), 789-845.

    Abstract

    We propose that the choice between the auxiliaries hebben 'have' and zijn 'be' in Dutch is determined by a particular semantic feature of verbs. In particular we propose a feature of meaning [IEPS] for 'inferable eventual position or state' that characterizes whether the action denoted by the verb allows us to determine the eventual position or state of the verb's highest argument. It is argued that only verbs which exhibit the feature [+IEPS] or which obtain the feature compositionally in the syntax select zijn as their auxiliary. Our analysis is then compared to a number of other analyses of auxiliary selection in Dutch.

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  • Liljeström, M., Hulten, A., Parkkonen, L., & Salmelin, R. (2009). Comparing MEG and fMRI views to naming actions and objects. Human Brain Mapping, 30, 1845-1856. doi:10.1002/hbm.20785.

    Abstract

    Most neuroimaging studies are performed using one imaging method only, either functional magnetic resonance imaging (fMRI), electroencephalography (EEG), or magnetoencephalography (MEG). Information on both location and timing has been sought by recording fMRI and EEG, simultaneously, or MEG and fMRI in separate sessions. Such approaches assume similar active areas whether detected via hemodynamic or electrophysiological signatures. Direct comparisons, after independent analysis of data from each imaging modality, have been conducted primarily on low-level sensory processing. Here, we report MEG (timing and location) and fMRI (location) results in 11 subjects when they named pictures that depicted an action or an object. The experimental design was exactly the same for the two imaging modalities. The MEG data were analyzed with two standard approaches: a set of equivalent current dipoles and a distributed minimum norm estimate. The fMRI blood-oxygenlevel dependent (BOLD) data were subjected to the usual random-effect contrast analysis. At the group level, MEG and fMRI data showed fairly good convergence, with both overall activation patterns and task effects localizing to comparable cortical regions. There were some systematic discrepancies, however, and the correspondence was less compelling in the individual subjects. The present analysis should be helpful in reconciling results of fMRI and MEG studies on high-level cognitive functions
  • Liszkowski, U., Schäfer, M., Carpenter, M., & Tomasello, M. (2009). Prelinguistic infants, but not chimpanzees, communicate about absent entities. Psychological Science, 20, 654-660.

    Abstract

    One of the defining features of human language is displacement, the ability to make reference to absent entities. Here we show that prelinguistic, 12-month-old infants already can use a nonverbal pointing gesture to make reference to absent entities. We also show that chimpanzees—who can point for things they want humans to give them—do not point to refer to absent entities in the same way. These results demonstrate that the ability to communicate about absent but mutually known entities depends not on language, but rather on deeper social-cognitive skills that make acts of linguistic reference possible in the first place. These nonlinguistic skills for displaced reference emerged apparently only after humans' divergence from great apes some 6 million years ago.
  • Liszkowski, U. (2014). Two sources of meaning in infant communication: Preceding action contexts and act-accompanying characteristics. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 369(1651): 20130294. doi:10.1098/rstb.2013.0294.
  • Littauer, R., Roberts, S. G., Winters, J., Bailes, R., Pleyer, M., & Little, H. (2014). From the savannah to the cloud: Blogging evolutionary linguistics research. The Past, Present and Future of Language Evolution Research: Student Volume of the 9th International Conference on the Evolution of Language, 121-133.

    Abstract

    Over the last thirty years, evolutionary linguistics has grown as a data-driven, interdisciplinary field and received accelerated interest due to its adoption of modern research methodologies. This growth is dependant upon the methods used to both disseminate and foster discussion of research by the larger academic community. We argue that the internet is increasingly being used as an efficient means of finding and presenting research. The traditional journal format for disseminating knowledge was well-designed within the confines of print publication. With the tools afforded to us by technology and the internet, the evolutionary linguistics research community is able to compensate for the necessary shortcomings of the journal format. We evaluate examples of how research blogging has aided language scientists. We review the state of the field for online, real-time academic debate, by covering particular instances of post- publication review and their reaction. We conclude by considering how evolutionary linguistics as a field can potentially benefit from using the internet
  • Liu, C., Kong, X., Liu, X., Zhou, R., & Wu, B. (2014). Long-term total sleep deprivation reduces thalamic gray matter volume in healthy men. NeuroReport, 25(5), 320-323. doi:10.1097/WNR.0000000000000091.

    Abstract

    Sleep loss can alter extrinsic, task-related functional MRI signals involved in attention, memory, and executive function. However, the effects of sleep loss on brain structure have not been well characterized. Recent studies with patients with sleep disorders and animal models have demonstrated reduction of regional brain structure in the hippocampus and thalamus. In this study, using T1-weighted MRI, we examined the change of regional gray matter volume in healthy adults after long-term total sleep deprivation (∼72 h). Regional volume changes were explored using voxel-based morphometry with a paired two-sample t-test. The results revealed significant loss of gray matter volume in the thalamus but not in the hippocampus. No overall decrease in whole brain gray matter volume was noted after sleep deprivation. As expected, sleep deprivation significantly reduced visual vigilance as assessed by the continuous performance test, and this decrease was correlated significantly with reduced regional gray matter volume in thalamic regions. This study provides the first evidence for sleep loss-related changes in gray matter in the healthy adult brain.
  • Lloyd, S. E., Günther, W., Pearce, S. H. S., Thomson, A., Bianchi, M. L., Bosio, M., Craig, I. W., Fisher, S. E., Scheinman, S. J., Wrong, O., Jentsch, T. J., & Thakker, R. V. (1997). Characterisation of renal chloride channel, CLCN5, mutations in hypercalciuric nephrolithiasis (kidney stones) disorders. Human Molecular Genetics, 6(8), 1233-1239. doi:10.1093/hmg/6.8.1233.

    Abstract

    Mutations of the renal-specific chloride channel (CLCN5) gene, which is located on chromosome Xp11.22, are associated with hypercalciuric nephrolithiasis (kidney stones) in the Northern European and Japanese populations. CLCN5 encodes a 746 amino acid channel (CLC-5) that has approximately 12 transmembrane domains, and heterologous expression of wild-type CLC-5 in Xenopus oocytes has yielded outwardly rectifying chloride currents that were markedly reduced or abolished by these mutations. In order to assess further the structural and functional relationships of this recently cloned chloride channel, additional CLCN5 mutations have been identified in five unrelated families with this disorder. Three of these mutations were missense (G57V, G512R and E527D), one was a nonsense (R648Stop) and one was an insertion (30:H insertion). In addition, two of the mutations (30:H insertion and E527D) were demonstrated to be de novo, and the G57V and E527D mutations were identified in families of Afro-American and Indian origin, respectively. The G57V and 30:H insertion mutations represent the first CLCN5 mutations to be identified in the N-terminus region, and the R648Stop mutation, which has been observed previously in an unrelated family, suggests that this codon may be particularly prone to mutations. Heterologous expression of the mutations resulted in a marked reduction or abolition of the chloride currents, thereby establishing their functional importance. These results help to elucidate further the structure-function relationships of this renal chloride channel.
  • Lohmann, A., & Takada, T. (2014). Order in NP conjuncts in spoken English and Japanese. Lingua, 152, 48-64. doi:10.1016/j.lingua.2014.09.011.

    Abstract

    In the emerging field of cross-linguistic studies on language production, one particularly interesting line of inquiry is possible differences between English and Japanese in ordering words and phrases. Previous research gives rise to the idea that there is a difference in accessing meaning versus form during linearization between these two languages. This assumption is based on observations of language-specific effects of the length factor on the order of phrases (short-before-long in English, long-before-short in Japanese). We contribute to the cross-linguistic exploration of such differences by investigating the variables underlying the internal order of NP conjuncts in spoken English and Japanese. Our quantitative analysis shows that similar influences underlie the ordering process across the two languages. Thus we do not find evidence for the aforementioned difference in accessing meaning versus form with this syntactic phenomenon. With regard to length, Japanese also exhibits a short-before-long preference. However, this tendency is significantly weaker in Japanese than in English, which we explain through an attenuating influence of the typical Japanese phrase structure pattern on the universal effect of short phrases being more accessible. We propose that a similar interaction between entrenched long-before-short schemas and universal accessibility effects is responsible for the varying effects of length in Japanese.
  • Long, M., Moore, I., Mollica, F., & Rubio-Fernandez, P. (2021). Contrast perception as a visual heuristic in the formulation of referential expressions. Cognition, 217: 104879. doi:10.1016/j.cognition.2021.104879.

    Abstract

    We hypothesize that contrast perception works as a visual heuristic, such that when speakers perceive a significant degree of contrast in a visual context, they tend to produce the corresponding adjective to describe a referent. The contrast perception heuristic supports efficient audience design, allowing speakers to produce referential expressions with minimum expenditure of cognitive resources, while facilitating the listener's visual search for the referent. We tested the perceptual contrast hypothesis in three language-production experiments. Experiment 1 revealed that speakers overspecify color adjectives in polychrome displays, whereas in monochrome displays they overspecified other properties that were contrastive. Further support for the contrast perception hypothesis comes from a re-analysis of previous work, which confirmed that color contrast elicits color overspecification when detected in a given display, but not when detected across monochrome trials. Experiment 2 revealed that even atypical colors (which are often overspecified) are only mentioned if there is color contrast. In Experiment 3, participants named a target color faster in monochrome than in polychrome displays, suggesting that the effect of color contrast is not analogous to ease of production. We conclude that the tendency to overspecify color in polychrome displays is not a bottom-up effect driven by the visual salience of color as a property, but possibly a learned communicative strategy. We discuss the implications of our account for pragmatic theories of referential communication and models of audience design, challenging the view that overspecification is a form of egocentric behavior.

    Additional information

    supplementary data
  • Long, M., Shukla, V., & Rubio-Fernandez, P. (2021). The development of simile comprehension: From similarity to scalar implicature. Child Development, 92(4), 1439-1457. doi:10.1111/cdev.13507.

    Abstract

    Similes require two different pragmatic skills: appreciating the intended similarity and deriving a scalar implicature (e.g., “Lucy is like a parrot” normally implies that Lucy is not a parrot), but previous studies overlooked this second skill. In Experiment 1, preschoolers (N = 48; ages 3–5) understood “X is like a Y” as an expression of similarity. In Experiment 2 (N = 99; ages 3–6, 13) and Experiment 3 (N = 201; ages 3–5 and adults), participants received metaphors (“Lucy is a parrot”) or similes (“Lucy is like a parrot”) as clues to select one of three images (a parrot, a girl or a parrot-looking girl). An early developmental trend revealed that 3-year-olds started deriving the implicature “X is not a Y,” whereas 5-year-olds performed like adults.
  • Lopopolo, A., Van de Bosch, A., Petersson, K. M., & Willems, R. M. (2021). Distinguishing syntactic operations in the brain: Dependency and phrase-structure parsing. Neurobiology of Language, 2(1), 152-175. doi:10.1162/nol_a_00029.

    Abstract

    Finding the structure of a sentence — the way its words hold together to convey meaning — is a fundamental step in language comprehension. Several brain regions, including the left inferior frontal gyrus, the left posterior superior temporal gyrus, and the left anterior temporal pole, are supposed to support this operation. The exact role of these areas is nonetheless still debated. In this paper we investigate the hypothesis that different brain regions could be sensitive to different kinds of syntactic computations. We compare the fit of phrase-structure and dependency structure descriptors to activity in brain areas using fMRI. Our results show a division between areas with regard to the type of structure computed, with the left ATP and left IFG favouring dependency structures and left pSTG favouring phrase structures.
  • Lowndes, R., Molz, B., Warriner, L., Herbik, A., De Best, P. B., Raz, N., Gouws, A., Ahmadi, K., McLean, R. J., Gottlob, I., Kohl, S., Choritz, L., Maguire, J., Kanowski, M., Käsmann-Kellner, B., Wieland, I., Banin, E., Levin, N., Hoffmann, M. B., Morland, A. B. and 1 moreLowndes, R., Molz, B., Warriner, L., Herbik, A., De Best, P. B., Raz, N., Gouws, A., Ahmadi, K., McLean, R. J., Gottlob, I., Kohl, S., Choritz, L., Maguire, J., Kanowski, M., Käsmann-Kellner, B., Wieland, I., Banin, E., Levin, N., Hoffmann, M. B., Morland, A. B., & Baseler, H. A. (2021). Structural differences across multiple visual cortical regions in the absence of cone function in congenital achromatopsia. Frontiers in Neuroscience, 15: 718958. doi:10.3389/fnins.2021.718958.

    Abstract

    Most individuals with congenital achromatopsia (ACHM) carry mutations that affect the retinal phototransduction pathway of cone photoreceptors, fundamental to both high acuity vision and colour perception. As the central fovea is occupied solely by cones, achromats have an absence of retinal input to the visual cortex and a small central area of blindness. Additionally, those with complete ACHM have no colour perception, and colour processing regions of the ventral cortex also lack typical chromatic signals from the cones. This study examined the cortical morphology (grey matter volume, cortical thickness, and cortical surface area) of multiple visual cortical regions in ACHM (n = 15) compared to normally sighted controls (n = 42) to determine the cortical changes that are associated with the retinal characteristics of ACHM. Surface-based morphometry was applied to T1-weighted MRI in atlas-defined early, ventral and dorsal visual regions of interest. Reduced grey matter volume in V1, V2, V3, and V4 was found in ACHM compared to controls, driven by a reduction in cortical surface area as there was no significant reduction in cortical thickness. Cortical surface area (but not thickness) was reduced in a wide range of areas (V1, V2, V3, TO1, V4, and LO1). Reduction in early visual areas with large foveal representations (V1, V2, and V3) suggests that the lack of foveal input to the visual cortex was a major driving factor in morphological changes in ACHM. However, the significant reduction in ventral area V4 coupled with the lack of difference in dorsal areas V3a and V3b suggest that deprivation of chromatic signals to visual cortex in ACHM may also contribute to changes in cortical morphology. This research shows that the congenital lack of cone input to the visual cortex can lead to widespread structural changes across multiple visual areas.

    Additional information

    table S1
  • Lüttjohann, A., Schoffelen, J.-M., & Van Luijtelaar, G. (2014). Termination of ongoing spike-wave discharges investigated by cortico-thalamic network analyses. Neurobiology of Disease, 70, 127-137. doi:10.1016/j.nbd.2014.06.007.

    Abstract

    Purpose While decades of research were devoted to study generation mechanisms of spontaneous spike and wave discharges (SWD), little attention has been paid to network mechanisms associated with the spontaneous termination of SWD. In the current study coupling-dynamics at the onset and termination of SWD were studied in an extended part of the cortico-thalamo-cortical system of freely moving, genetic absence epileptic WAG/Rij rats. Methods Local-field potential recordings of 16 male WAG/Rij rats, equipped with multiple electrodes targeting layer 4 to 6 of the somatosensory-cortex (ctx4, ctx5, ctx6), rostral and caudal reticular thalamic nucleus (rRTN & cRTN), Ventral Postero Medial (VPM), anterior- (ATN) and posterior (Po) thalamic nucleus, were obtained. Six seconds lasting pre-SWD->SWD, SWD->post SWD and control periods were analyzed with time-frequency methods and between-region interactions were quantified with frequencyresolved Granger Causality (GC) analysis. Results Most channel-pairs showed increases in GC lasting from onset to offset of the SWD. While for most thalamo-thalamic pairs a dominant coupling direction was found during the complete SWD, most cortico-thalamic pairs only showed a dominant directional drive (always from cortex to thalamus) during the first 500ms of SWD. Channel-pair ctx4-rRTN showed a longer lasting dominant cortical drive, which stopped 1.5 sec prior to SWD offset. This early decrease in directional coupling was followed by an increase in directional coupling from cRTN to rRTN 1 sec prior to SWD offset. For channel pairs ctx5-Po and ctx6-Po the heightened cortex->thalamus coupling remained until 1.5 sec following SWD offset, while the thalamus->cortex coupling for these pairs stopped at SWD offset. Conclusion The high directional coupling from somatosensory cortex to the thalamus at SWD onset is in good agreement with the idea of a cortical epileptic focus that initiates and entrains other brain structures into seizure activity. The decrease of cortex to rRTN coupling as well as the increased coupling from cRTN to rRTN preceding SWD termination demonstrate that SWD termination is a gradual process that involves both cortico-thalamic as well as intrathalamic processes. The rostral RTN seems to be an important resonator for SWD and relevant for maintenance, while the cRTN might inhibit this oscillation. The somatosensory cortex seems to attempt to reinitiate SWD following its offset via its strong coupling to the posterior thalamus.
  • Lutzenberger, H., De Vos, C., Crasborn, O., & Fikkert, P. (2021). Formal variation in the Kata Kolok lexicon. Glossa: a journal of general linguistics, 6. doi:10.16995/glossa.5880.

    Abstract

    Sign language lexicons incorporate phonological specifications. Evidence from emerging sign languages suggests that phonological structure emerges gradually in a new language. In this study, we investigate variation in the form of signs across 20 deaf adult signers of Kata Kolok, a sign language that emerged spontaneously in a Balinese village community. Combining methods previously used for sign comparisons, we introduce a new numeric measure of variation. Our nuanced yet comprehensive approach to form variation integrates three levels (iconic motivation, surface realisation, feature differences) and allows for refinement through weighting the variation score by token and signer frequency. We demonstrate that variation in the form of signs appears in different degrees at different levels. Token frequency in a given dataset greatly affects how much variation can surface, suggesting caution in interpreting previous findings. Different sign variants have different scopes of use among the signing population, with some more widely used than others. Both frequency weightings (token and signer) identify dominant sign variants, i.e., sign forms that are produced frequently or by many signers. We argue that variation does not equal the absence of conventionalisation. Indeed, especially in micro-community sign languages, variation may be key to understanding patterns of language emergence.
  • Magi, A., Tattini, L., Palombo, F., Benelli, M., Gialluisi, A., Giusti, B., Abbate, R., Seri, M., Gensini, G. F., Romeo, G., & Pippucci, T. (2014). H3M2: Detection of runs of homozygosity from whole-exome sequencing data. Bioinformatics, 2852-2859. doi:10.1093/bioinformatics/btu401.

    Abstract

    Motivation: Runs of homozygosity (ROH) are sizable chromosomal stretches of homozygous genotypes, ranging in length from tens of kilobases to megabases. ROHs can be relevant for population and medical genetics, playing a role in predisposition to both rare and common disorders. ROHs are commonly detected by single nucleotide polymorphism (SNP) microarrays, but attempts have been made to use whole-exome sequencing (WES) data. Currently available methods developed for the analysis of uniformly spaced SNP-array maps do not fit easily to the analysis of the sparse and non-uniform distribution of the WES target design. Results: To meet the need of an approach specifically tailored to WES data, we developed (HM2)-M-3, an original algorithm based on heterogeneous hidden Markov model that incorporates inter-marker distances to detect ROH from WES data. We evaluated the performance of H-3 M-2 to correctly identify ROHs on synthetic chromosomes and examined its accuracy in detecting ROHs of different length (short, medium and long) from real 1000 genomes project data. H3M2 turned out to be more accurate than GERMLINE and PLINK, two state-of-the-art algorithms, especially in the detection of short and medium ROHs
  • Magyari, L., Bastiaansen, M. C. M., De Ruiter, J. P., & Levinson, S. C. (2014). Early anticipation lies behind the speed of response in conversation. Journal of Cognitive Neuroscience, 26(11), 2530-2539. doi:10.1162/jocn_a_00673.

    Abstract

    RTs in conversation, with average gaps of 200 msec and often less, beat standard RTs, despite the complexity of response and the lag in speech production (600 msec or more). This can only be achieved by anticipation of timing and content of turns in conversation, about which little is known. Using EEG and an experimental task with conversational stimuli, we show that estimation of turn durations are based on anticipating the way the turn would be completed. We found a neuronal correlate of turn-end anticipation localized in ACC and inferior parietal lobule, namely a beta-frequency desynchronization as early as 1250 msec, before the end of the turn. We suggest that anticipation of the other's utterance leads to accurately timed transitions in everyday conversations.
  • Majid, A., & Burenhult, N. (2014). Odors are expressible in language, as long as you speak the right language. Cognition, 130(2), 266-270. doi:10.1016/j.cognition.2013.11.004.

    Abstract

    From Plato to Pinker there has been the common belief that the experience of a smell is impossible to put into words. Decades of studies have confirmed this observation. But the studies to date have focused on participants from urbanized Western societies. Cross-cultural research suggests that there may be other cultures where odors play a larger role. The Jahai of the Malay Peninsula are one such group. We tested whether Jahai speakers could name smells as easily as colors in comparison to a matched English group. Using a free naming task we show on three different measures that Jahai speakers find it as easy to name odors as colors, whereas English speakers struggle with odor naming. Our findings show that the long-held assumption that people are bad at naming smells is not universally true. Odors are expressible in language, as long as you speak the right language.
  • Mak, M., & Willems, R. M. (2021). Eyelit: Eye movement and reader response data during literary reading. Journal of open humanities data, 7: 25. doi:10.5334/johd.49.

    Abstract

    An eye-tracking data set is described of 102 participants reading three Dutch literary short stories each (7790 words in total per participant). The pre-processed data set includes (1) Fixation report, (2) Saccade report, (3) Interest Area report, (4) Trial report (aggregated data for each page), (5) Sample report (sampling rate = 500 Hz), (6) Questionnaire data on reading experiences and participant characteristics, and (7) word characteristics for all words (with the potential of calculating additional word characteristics). It is stored on DANS, and can be used to study word characteristics or literary reading and all facets of eye movements.
  • Malt, B. C., Ameel, E., Imai, M., Gennari, S., Saji, N., & Majid, A. (2014). Human locomotion in languages: Constraints on moving and meaning. Journal of Memory and Language, 74, 107-123. doi:10.1016/j.jml.2013.08.003.

    Abstract

    The distinctions between red and yellow or arm and hand may seem self-evident to English speakers, but they are not: Languages differ in the named distinctions they make. To help understand what constrains word meaning and how variation arises, we examined name choices in English, Dutch, Spanish, and Japanese for 36 instances of human locomotion. Naming patterns showed commonalities largely interpretable in terms of perceived physical similarities among the instances. There was no evidence for languages jointly ignoring salient physical distinctions to build meaning on other bases, nor for a shift in the basis of word meanings between parts of the domain of more vs. less importance to everyday life. Overall, the languages differed most notably in how many named distinctions they made, a form of variation that may be linked to linguistic typology. These findings, considered along with naming patterns from other domains, suggest recurring principles of constraint and variation across domains.
  • Manhardt, F., Brouwer, S., & Ozyurek, A. (2021). A tale of two modalities: Sign and speech influence in each other in bimodal bilinguals. Psychological Science, 32(3), 424-436. doi:10.1177/0956797620968789.

    Abstract

    Bimodal bilinguals are hearing individuals fluent in a sign and a spoken language. Can the two languages influence each other in such individuals despite differences in the visual (sign) and vocal (speech) modalities of expression? We investigated cross-linguistic influences on bimodal bilinguals’ expression of spatial relations. Unlike spoken languages, sign uses iconic linguistic forms that resemble physical features of objects in a spatial relation and thus expresses specific semantic information. Hearing bimodal bilinguals (n = 21) fluent in Dutch and Sign Language of the Netherlands and their hearing nonsigning and deaf signing peers (n = 20 each) described left/right relations between two objects. Bimodal bilinguals expressed more specific information about physical features of objects in speech than nonsigners, showing influence from sign language. They also used fewer iconic signs with specific semantic information than deaf signers, demonstrating influence from speech. Bimodal bilinguals’ speech and signs are shaped by two languages from different modalities.

    Additional information

    supplementary materials
  • Mani, N., & Huettig, F. (2014). Word reading skill predicts anticipation of upcoming spoken language input: A study of children developing proficiency in reading. Journal of Experimental Child Psychology, 126, 264-279. doi:10.1016/j.jecp.2014.05.004.

    Abstract

    Despite the efficiency with which language users typically process spoken language, a growing body of research finds substantial individual differences in both the speed and accuracy of spoken language processing potentially attributable to participants’ literacy skills. Against this background, the current study takes a look at the role of word reading skill in listener’s anticipation of upcoming spoken language input in children at the cusp of learning to read: if reading skills impact predictive language processing, then children at this stage of literacy acquisition should be most susceptible to the effects of reading skills on spoken language processing. We tested 8-year-old children on their prediction of upcoming spoken language input in an eye-tracking task. While children, like in previous studies to-date, were successfully able to anticipate upcoming spoken language input, there was a strong positive correlation between children’s word reading (but not their pseudo-word reading and meta-phonological awareness or their spoken word recognition) skills and their prediction skills. We suggest that these findings are most compatible with the notion that the process of learning orthographic representations during reading acquisition sharpens pre-existing lexical representations which in turn also supports anticipation of upcoming spoken words.
  • Martin, A. E., Nieuwland, M. S., & Carrieras, M. (2014). Agreement attraction during comprehension of grammatical sentences: ERP evidence from ellipsis. Brain and Language, 135, 42-51. doi:10.1016/j.bandl.2014.05.001.

    Abstract

    Successful dependency resolution during language comprehension relies on accessing certain representations in memory, and not others. We recently reported event-related potential (ERP) evidence that syntactically unavailable, intervening attractor-nouns interfered during comprehension of Spanish noun-phrase ellipsis (the determiner otra/otro): grammatically correct determiners that mismatched the gender of attractor-nouns elicited a sustained negativity as also observed for incorrect determiners (Martin, Nieuwland, & Carreiras, 2012). The current study sought to extend this novel finding in sentences containing object-extracted relative clauses, where the antecedent may be less prominent. Whereas correct determiners that matched the gender of attractor-nouns now elicited an early anterior negativity as also observed for mismatching determiners, the previously reported interaction pattern was replicated in P600 responses to subsequent words. Our results suggest that structural and gender information is simultaneously taken into account, providing further evidence for retrieval interference during comprehension of grammatical sentences.
  • Martin, A. E., & McElree, B. (2009). Memory operations that support language comprehension: Evidence from verb-phrase ellipsis. Journal of Experimental Psychology: Learning, Memory, and Cognition, 35(5), 1231-1239. doi:10.1037/a0016271.

    Abstract

    Comprehension of verb-phrase ellipsis (VPE) requires reevaluation of recently processed constituents, which often necessitates retrieval of information about the elided constituent from memory. A. E. Martin and B. McElree (2008) argued that representations formed during comprehension are content addressable and that VPE antecedents are retrieved from memory via a cue-dependent direct-access pointer rather than via a search process. This hypothesis was further tested by manipulating the location of interfering material—either before the onset of the antecedent (proactive interference; PI) or intervening between antecedent and ellipsis site (retroactive interference; RI). The speed–accuracy tradeoff procedure was used to measure the time course of VPE processing. The location of the interfering material affected VPE comprehension accuracy: RI conditions engendered lower accuracy than PI conditions. Crucially, location did not affect the speed of processing VPE, which is inconsistent with both forward and backward search mechanisms. The observed time-course profiles are consistent with the hypothesis that VPE antecedents are retrieved via a cue-dependent direct-access operation. (PsycINFO Database Record (c) 2016 APA, all rights reserved)
  • Massaro, D. W., & Jesse, A. (2009). Read my lips: Speech distortions in musical lyrics can be overcome (slightly) by facial information. Speech Communication, 51(7), 604-621. doi:10.1016/j.specom.2008.05.013.

    Abstract

    Understanding the lyrics of many contemporary songs is difficult, and an earlier study [Hidalgo-Barnes, M., Massaro, D.W., 2007. Read my lips: an animated face helps communicate musical lyrics. Psychomusicology 19, 3–12] showed a benefit for lyrics recognition when seeing a computer-animated talking head (Baldi) mouthing the lyrics along with hearing the singer. However, the contribution of visual information was relatively small compared to what is usually found for speech. In the current experiments, our goal was to determine why the face appears to contribute less when aligned with sung lyrics than when aligned with normal speech presented in noise. The first experiment compared the contribution of the talking head with the originally sung lyrics versus the case when it was aligned with the Festival text-to-speech synthesis (TtS) spoken at the original duration of the song’s lyrics. A small and similar influence of the face was found in both conditions. In the three experiments, we compared the presence of the face when the durations of the TtS were equated with the duration of the original musical lyrics to the case when the lyrics were read with typical TtS durations and this speech embedded in noise. The results indicated that the unusual temporally distorted durations of musical lyrics decreases the contribution of the visible speech from the face.
  • Matic, D., & Nikolaeva, I. (2014). Realis mood, focus, and existential closure in Tundra Yukaghir. Lingua, 150, 202-231. doi:10.1016/j.lingua.2014.07.016.

    Abstract

    The nature and the typological validity of the categories ‘realis’ and ‘irrealis’ has been a matter of intensive debate. In this paper we analyse the realis/irrealis dichotomy in Tundra Yukaghir (isolate, north-eastern Siberia), and show that in this language realis is associated with a meaningful contribution, namely, existential quantification over events. This contribution must be expressed overtly by a combination of syntactic and prosodic means. Irrealis is the default category: the clause is interpreted as irrealis in the absence of the marker of realis. This implies that the relevant typological question may turn out to be the semantics of realis, rather than irrealis. We further argue that the Tundra Yukaghir realis is a hybrid category composed of elements from different domains (information structure, lexical semantics, and quantification) unified at the level of interpretation via pragmatic enrichment. The concept of notional mood must therefore be expanded to include moods which come about in interpretation and do not constitute a discrete denotation.
  • Mattys, S. L., & Scharenborg, O. (2014). Phoneme categorization and discrimination in younger and older adults: A comparative analysis of perceptual, lexical, and attentional factors. Psychology and Aging, 29(1), 150-162. doi:10.1037/a0035387.

    Abstract

    This study investigates the extent to which age-related language processing difficulties are due to a decline in sensory processes or to a deterioration of cognitive factors, specifically, attentional control. Two facets of attentional control were examined: inhibition of irrelevant information and divided attention. Younger and older adults were asked to categorize the initial phoneme of spoken syllables (“Was it m or n?”), trying to ignore the lexical status of the syllables. The phonemes were manipulated to range in eight steps from m to n. Participants also did a discrimination task on syllable pairs (“Were the initial sounds the same or different?”). Categorization and discrimination were performed under either divided attention (concurrent visual-search task) or focused attention (no visual task). The results showed that even when the younger and older adults were matched on their discrimination scores: (1) the older adults had more difficulty inhibiting lexical knowledge than did younger adults, (2) divided attention weakened lexical inhibition in both younger and older adults, and (3) divided attention impaired sound discrimination more in older than younger listeners. The results confirm the independent and combined contribution of sensory decline and deficit in attentional control to language processing difficulties associated with aging. The relative weight of these variables and their mechanisms of action are discussed in the context of theories of aging and language.
  • Mazuka, R., Hasegawa, M., & Tsuji, S. (2014). Development of non-native vowel discrimination: Improvement without exposure. Developmental Psychobiology, 56(2), 192-209. doi:10.1002/dev.21193.

    Abstract

    he present study tested Japanese 4.5- and 10-month old infants' ability to discriminate three German vowel pairs, none of which are contrastive in Japanese, using a visual habituation–dishabituation paradigm. Japanese adults' discrimination of the same pairs was also tested. The results revealed that Japanese 4.5-month old infants discriminated the German /bu:k/-/by:k/ contrast, but they showed no evidence of discriminating the /bi:k/-/be:k/ or /bu:k/-/bo:k/ contrasts. Japanese 10-month old infants, on the other hand, discriminated the German /bi:k/-/be:k/ contrast, while they showed no evidence of discriminating the /bu:k/-/by:k/ or /bu:k/-/bo:k/ contrasts. Japanese adults, in contrast, were highly accurate in their discrimination of all of the pairs. The results indicate that discrimination of non-native contrasts is not always easy even for young infants, and that their ability to discriminate non-native contrasts can improve with age even when they receive no exposure to a language in which the given contrast is phonemic. © 2013 Wiley Periodicals, Inc. Dev Psychobiol 56: 192–209, 2014.
  • McConnell, K., & Blumenthal-Dramé, A. (2021). Usage-Based Individual Differences in the Probabilistic Processing of Multi-Word Sequences. Frontiers in Communication, 6: 703351. doi:10.3389/fcomm.2021.703351.

    Abstract

    While it is widely acknowledged that both predictive expectations and retrodictive
    integration influence language processing, the individual differences that affect these
    two processes and the best metrics for observing them have yet to be fully described.
    The present study aims to contribute to the debate by investigating the extent to which
    experienced-based variables modulate the processing of word pairs (bigrams).
    Specifically, we investigate how age and reading experience correlate with lexical
    anticipation and integration, and how this effect can be captured by the metrics of
    forward and backward transition probability (TP). Participants read more and less
    strongly associated bigrams, paired to control for known lexical covariates such as
    bigram frequency and meaning (i.e., absolute control, total control, absolute silence,
    total silence) in a self-paced reading (SPR) task. They additionally completed
    assessments of exposure to print text (Author Recognition Test, Shipley vocabulary
    assessment, Words that Go Together task) and provided their age. Results show that
    both older age and lesser reading experience individually correlate with stronger TP
    effects. Moreover, TP effects differ across the spillover region (the two words following
    the noun in the bigram)
  • McQueen, J. M., & Huettig, F. (2014). Interference of spoken word recognition through phonological priming from visual objects and printed words. Attention, Perception & Psychophysics, 76, 190-200. doi:10.3758/s13414-013-0560-8.

    Abstract

    Three cross-modal priming experiments examined the influence of pre-exposure to
    pictures and printed words on the speed of spoken word recognition. Targets for
    auditory lexical decision were spoken Dutch words and nonwords, presented in
    isolation (Experiments 1 and 2) or after a short phrase (Experiment 3). Auditory
    stimuli were preceded by primes which were pictures (Experiments 1 and 3) or those pictures’ printed names (Experiment 2). Prime-target pairs were phonologically onsetrelated (e.g., pijl-pijn, arrow-pain), were from the same semantic category (e.g., pijlzwaard, arrow-sword), or were unrelated on both dimensions. Phonological
    interference and semantic facilitation were observed in all experiments. Priming
    magnitude was similar for pictures and printed words, and did not vary with picture
    viewing time or number of pictures in the display (either one or four). These effects
    arose even though participants were not explicitly instructed to name the pictures and where strategic naming would interfere with lexical decision-making. This suggests
    that, by default, processing of related pictures and printed words influences how
    quickly we recognize related spoken words.
  • McQueen, J. M., Jesse, A., & Norris, D. (2009). No lexical–prelexical feedback during speech perception or: Is it time to stop playing those Christmas tapes? Journal of Memory and Language, 61, 1-18. doi:10.1016/j.jml.2009.03.002.

    Abstract

    The strongest support for feedback in speech perception comes from evidence of apparent lexical influence on prelexical fricative-stop compensation for coarticulation. Lexical knowledge (e.g., that the ambiguous final fricative of Christma? should be [s]) apparently influences perception of following stops. We argue that all such previous demonstrations can be explained without invoking lexical feedback. In particular, we show that one demonstration [Magnuson, J. S., McMurray, B., Tanenhaus, M. K., & Aslin, R. N. (2003). Lexical effects on compensation for coarticulation: The ghost of Christmash past. Cognitive Science, 27, 285–298] involved experimentally-induced biases (from 16 practice trials) rather than feedback. We found that the direction of the compensation effect depended on whether practice stimuli were words or nonwords. When both were used, there was no lexically-mediated compensation. Across experiments, however, there were lexical effects on fricative identification. This dissociation (lexical involvement in the fricative decisions but not in the following stop decisions made on the same trials) challenges interactive models in which feedback should cause both effects. We conclude that the prelexical level is sensitive to experimentally-induced phoneme-sequence biases, but that there is no feedback during speech perception.
  • Mead, S., Poulter, M., Uphill, J., Beck, J., Whitfield, J., Webb, T. E., Campbell, T., Adamson, G., Deriziotis, P., Tabrizi, S. J., Hummerich, H., Verzilli, C., Alpers, M. P., Whittaker, J. C., & Collinge, J. (2009). Genetic risk factors for variant Creutzfeldt-Jakob disease: A genome-wide association study. Lancet Neurology, 8(1), 57-66. doi:10.1016/S1474-4422(08)70265-5.

    Abstract

    BACKGROUND: Human and animal prion diseases are under genetic control, but apart from PRNP (the gene that encodes the prion protein), we understand little about human susceptibility to bovine spongiform encephalopathy (BSE) prions, the causal agent of variant Creutzfeldt-Jakob disease (vCJD).METHODS: We did a genome-wide association study of the risk of vCJD and tested for replication of our findings in samples from many categories of human prion disease (929 samples) and control samples from the UK and Papua New Guinea (4254 samples), including controls in the UK who were genotyped by the Wellcome Trust Case Control Consortium. We also did follow-up analyses of the genetic control of the clinical phenotype of prion disease and analysed candidate gene expression in a mouse cellular model of prion infection. FINDINGS: The PRNP locus was strongly associated with risk across several markers and all categories of prion disease (best single SNP [single nucleotide polymorphism] association in vCJD p=2.5 x 10(-17); best haplotypic association in vCJD p=1 x 10(-24)). Although the main contribution to disease risk was conferred by PRNP polymorphic codon 129, another nearby SNP conferred increased risk of vCJD. In addition to PRNP, one technically validated SNP association upstream of RARB (the gene that encodes retinoic acid receptor beta) had nominal genome-wide significance (p=1.9 x 10(-7)). A similar association was found in a small sample of patients with iatrogenic CJD (p=0.030) but not in patients with sporadic CJD (sCJD) or kuru. In cultured cells, retinoic acid regulates the expression of the prion protein. We found an association with acquired prion disease, including vCJD (p=5.6 x 10(-5)), kuru incubation time (p=0.017), and resistance to kuru (p=2.5 x 10(-4)), in a region upstream of STMN2 (the gene that encodes SCG10). The risk genotype was not associated with sCJD but conferred an earlier age of onset. Furthermore, expression of Stmn2 was reduced 30-fold post-infection in a mouse cellular model of prion disease. INTERPRETATION: The polymorphic codon 129 of PRNP was the main genetic risk factor for vCJD; however, additional candidate loci have been identified, which justifies functional analyses of these biological pathways in prion disease.
  • Mehta, G., & Cutler, A. (1988). Detection of target phonemes in spontaneous and read speech. Language and Speech, 31, 135-156.

    Abstract

    Although spontaneous speech occurs more frequently in most listeners’ experience than read speech, laboratory studies of human speech recognition typically use carefully controlled materials read from a script. The phonological and prosodic characteristics of spontaneous and read speech differ considerably, however, which suggests that laboratory results may not generalize to the recognition of spontaneous and read speech materials, and their response time to detect word-initial target phonemes was measured. Response were, overall, equally fast in each speech mode. However analysis of effects previously reported in phoneme detection studies revealed significant differences between speech modes. In read speech but not in spontaneous speech, later targets were detected more rapidly than earlier targets, and targets preceded by long words were detected more rapidly than targets preceded by short words. In contrast, in spontaneous speech but not in read speech, targets were detected more rapidly in accented than unaccented words and in strong than in weak syllables. An explanation for this pattern is offered in terms of characteristic prosodic differences between spontaneous and read speech. The results support claim from previous work that listeners pay great attention to prosodic information in the process of recognizing speech.
  • Melnychuk, T., Galke, L., Seidlmayer, E., Förster, K. U., Tochtermann, K., & Schultz, C. (2021). Früherkennung wissenschaftlicher Konvergenz im Hochschulmanagement. Hochschulmanagement, 16(1), 24-28.

    Abstract

    It is crucial for universities to recognize early signals of scientific convergence. Scientific convergence describes a dynamic pattern where the distance between different fields of knowledge shrinks over time. This knowledge
    space is beneficial to radical innovations and new promising research topics. Research in converging areas of knowledge can therefore allow universities to establish a leading position in the science community.
    The Q-AKTIV project develops a new approach on the basis of machine learning to identify scientific convergence at an early stage. In this work, we briefly present this approach and the first results of empirical validation. We discuss the benefits of an instrument building on our approach for the strategic management of universities and
    other research institutes.
  • Menenti, L., Petersson, K. M., Scheeringa, R., & Hagoort, P. (2009). When elephants fly: Differential sensitivity of right and left inferior frontal gyri to discourse and world knowledge. Journal of Cognitive Neuroscience, 21, 2358-2368. doi:10.1162/jocn.2008.21163.

    Abstract

    Both local discourse and world knowledge are known to influence sentence processing. We investigated how these two sources of information conspire in language comprehension. Two types of critical sentences, correct and world knowledge anomalies, were preceded by either a neutral or a local context. The latter made the world knowledge anomalies more acceptable or plausible. We predicted that the effect of world knowledge anomalies would be weaker for the local context. World knowledge effects have previously been observed in the left inferior frontal region (Brodmann's area 45/47). In the current study, an effect of world knowledge was present in this region in the neutral context. We also observed an effect in the right inferior frontal gyrus, which was more sensitive to the discourse manipulation than the left inferior frontal gyrus. In addition, the left angular gyrus reacted strongly to the degree of discourse coherence between the context and critical sentence. Overall, both world knowledge and the discourse context affect the process of meaning unification, but do so by recruiting partly different sets of brain areas.
  • Menks, W. M., Fehlbaum, L. V., Borbás, R., Sterzer, P., Stadler, C., & Raschle, N. M. (2021). Eye gaze patterns and functional brain responses during emotional face processing in adolescents with conduct disorder. NeuroImage: Clinical, 29: 102519. doi:10.1016/j.nicl.2020.102519.

    Abstract

    Background: Conduct disorder (CD) is characterized by severe aggressive and antisocial behavior. Initial evidence
    suggests neural deficits and aberrant eye gaze pattern during emotion processing in CD; both concepts, however,
    have not yet been studied simultaneously. The present study assessed the functional brain correlates of emotional
    face processing with and without consideration of concurrent eye gaze behavior in adolescents with CD
    compared to typically developing (TD) adolescents.
    Methods: 58 adolescents (23CD/35TD; average age = 16 years/range = 14–19 years) underwent an implicit
    emotional face processing task. Neuroimaging analyses were conducted for a priori-defined regions of interest
    (insula, amygdala, and medial orbitofrontal cortex) and using a full-factorial design assessing the main effects of
    emotion (neutral, anger, fear), group and the interaction thereof (cluster-level, p < .05 FWE-corrected) with and
    without consideration of concurrent eye gaze behavior (i.e., time spent on the eye region).
    Results: Adolescents with CD showed significant hypo-activations during emotional face processing in right
    anterior insula compared to TD adolescents, independent of the emotion presented. In-scanner eye-tracking data
    revealed that adolescents with CD spent significantly less time on the eye, but not mouth region. Correcting for
    eye gaze behavior during emotional face processing reduced group differences previously observed for right
    insula.
    Conclusions: Atypical insula activation during emotional face processing in adolescents with CD may partly be
    explained by attentional mechanisms (i.e., reduced gaze allocation to the eyes, independent of the emotion
    presented). An increased understanding of the mechanism causal for emotion processing deficits observed in CD
    may ultimately aid the development of personalized intervention programs

    Additional information

    1-s2.0-S2213158220303569-mmc1.doc
  • Menon, S., Rosenberg, K., Graham, S. A., Ward, E. M., Taylor, M. E., Drickamer, K., & Leckband, D. E. (2009). Binding-site geometry and flexibility in DC-SIGN demonstrated with surface force measurements. Proceedings of the National Academy of Sciences of the United States of America, 106, 11524-11529. doi:10.1073/pnas.0901783106.

    Abstract

    The dendritic cell receptor DC-SIGN mediates pathogen recognition by binding to glycans characteristic of pathogen surfaces, including those found on HIV. Clustering of carbohydrate-binding sites in the receptor tetramer is believed to be critical for targeting of pathogen glycans, but the arrangement of these sites remains poorly understood. Surface force measurements between apposed lipid bilayers displaying the extracellular domain of DC-SIGN and a neoglycolipid bearing an oligosaccharide ligand provide evidence that the receptor is in an extended conformation and that glycan docking is associated with a conformational change that repositions the carbohydrate-recognition domains during ligand binding. The results further show that the lateral mobility of membrane-bound ligands enhances the engagement of multiple carbohydrate-recognition domains in the receptor oligomer with appropriately spaced ligands. These studies highlight differences between pathogen targeting by DC-SIGN and receptors in which binding sites at fixed spacing bind to simple molecular patterns

    Additional information

    Menon_2009_Supporting_Information.pdf
  • He, J., Meyer, A. S., Creemers, A., & Brehm, L. (2021). Conducting language production research online: A web-based study of semantic context and name agreement effects in multi-word production. Collabra: Psychology, 7(1): 29935. doi:10.1525/collabra.29935.

    Abstract

    Few web-based experiments have explored spoken language production, perhaps due to concerns of data quality, especially for measuring onset latencies. The present study highlights how speech production research can be done outside of the laboratory by measuring utterance durations and speech fluency in a multiple-object naming task when examining two effects related to lexical selection: semantic context and name agreement. A web-based modified blocked-cyclic naming paradigm was created, in which participants named a total of sixteen simultaneously presented pictures on each trial. The pictures were either four tokens from the same semantic category (homogeneous context), or four tokens from different semantic categories (heterogeneous context). Name agreement of the pictures was varied orthogonally (high, low). In addition to onset latency, five dependent variables were measured to index naming performance: accuracy, utterance duration, total pause time, the number of chunks (word groups pronounced without intervening pauses), and first chunk length. Bayesian analyses showed effects of semantic context and name agreement for some of the dependent measures, but no interaction. We discuss the methodological implications of the current study and make best practice recommendations for spoken language production research in an online environment.
  • He, J., Meyer, A. S., & Brehm, L. (2021). Concurrent listening affects speech planning and fluency: The roles of representational similarity and capacity limitation. Language, Cognition and Neuroscience, 36(10), 1258-1280. doi:10.1080/23273798.2021.1925130.

    Abstract

    In a novel continuous speaking-listening paradigm, we explored how speech planning was affected by concurrent listening. In Experiment 1, Dutch speakers named pictures with high versus low name agreement while ignoring Dutch speech, Chinese speech, or eight-talker babble. Both name agreement and type of auditory input influenced response timing and chunking, suggesting that representational similarity impacts lexical selection and the scope of advance planning in utterance generation. In Experiment 2, Dutch speakers named pictures with high or low name agreement while either ignoring Dutch words, or attending to them for a later memory test. Both name agreement and attention demand influenced response timing and chunking, suggesting that attention demand impacts lexical selection and the planned utterance units in each response. The study indicates that representational similarity and attention demand play important roles in linguistic dual-task interference, and the interference can be managed by adapting when and how to plan speech.

    Additional information

    supplemental material
  • Meyer, A. S. (1997). Conceptual influences on grammatical planning units. Language and Cognitive Processes, 12, 859-863. doi:10.1080/016909697386745.
  • Meyer, A. S., & Schriefers, H. (1991). Phonological facilitation in picture-word interference experiments: Effects of stimulus onset asynchrony and types of interfering stimuli. Journal of Experimental Psychology: Learning, Memory, and Cognition, 17, 1146-1160. doi:10.1037/0278-7393.17.6.1146.

    Abstract

    Subjects named pictures while hearing distractor words that shared word-initial or word-final segments with the picture names or were unrelated to the picture names. The relative timing of distractor and picture presentation was varied. Compared with unrelated distractors, both types of related distractors facilitated picture naming under certain timing conditions. Begin-related distractors facilitated the naming responses if the shared segments began 150 ms before, at, or 150 ms after picture onset. By contrast, end-related distractors only facilitated the responses if the shared segments began at or 150 ms after picture onset. The results suggest that the phonological encoding of the beginning of a word is initiated before the encoding of its end.
  • Meyer, A. S. (1991). The time course of phonological encoding in language production: Phonological encoding inside a syllable. Journal of Memory and Language, 30, 69-69. doi:10.1016/0749-596X(91)90011-8.

    Abstract

    Eight experiments were carried out investigating whether different parts of a syllable must be phonologically encoded in a specific order or whether they can be encoded in any order. A speech production task was used in which the subjects in each test trial had to utter one out of three or five response words as quickly as possible. In the so-called homogeneous condition these words were related in form, while in the heterogeneous condition they were unrelated in form. For monosyllabic response words shorter reaction times were obtained in the homogeneous than in the heterogeneous condition when the words had the same onset, but not when they had the same rhyme. Similarly, for disyllabic response words, the reaction times were shorter in the homogeneous than in the heterogeneous condition when the words shared only the onset of the first syllable, but not when they shared only its rhyme. Furthermore, a stronger facilitatory effect was observed when the words had the entire first syllable in common than when they only shared the onset, or the onset and the nucleus, but not the coda of the first syllable. These results suggest that syllables are phonologically encoded in two ordered steps, the first of which is dedicated to the onset and the second to the rhyme.
  • Mickan, A., McQueen, J. M., Valentini, B., Piai, V., & Lemhöfer, K. (2021). Electrophysiological evidence for cross-language interference in foreign-language attrition. Neuropsychologia, 155: 107795. doi:10.1016/j.neuropsychologia.2021.107795.

    Abstract

    Foreign language attrition (FLA) appears to be driven by interference from other, more recently-used languages (Mickan et al., 2020). Here we tracked these interference dynamics electrophysiologically to further our understanding of the underlying processes. Twenty-seven Dutch native speakers learned 70 new Italian words over two days. On a third day, EEG was recorded as they performed naming tasks on half of these words in English and, finally, as their memory for all the Italian words was tested in a picture-naming task. Replicating Mickan et al., recall was slower and tended to be less complete for Italian words that were interfered with (i.e., named in English) than for words that were not. These behavioral interference effects were accompanied by an enhanced frontal N2 and a decreased late positivity (LPC) for interfered compared to not-interfered items. Moreover, interfered items elicited more theta power. We also found an increased N2 during the interference phase for items that participants were later slower to retrieve in Italian. We interpret the N2 and theta effects as markers of interference, in line with the idea that Italian retrieval at final test is hampered by competition from recently practiced English translations. The LPC, in turn, reflects the consequences of interference: the reduced accessibility of interfered Italian labels. Finally, that retrieval ease at final test was related to the degree of interference during previous English retrieval shows that FLA is already set in motion during the interference phase, and hence can be the direct consequence of using other languages.

    Additional information

    data via Donders Repository
  • Misersky, J., Gygax, P. M., Canal, P., Gabriel, U., Garnham, A., Braun, F., Chiarini, T., Englund, K., Hanulíková, A., Öttl, A., Valdrova, J., von Stockhausen, L., & Sczesny, S. (2014). Norms on the gender perception of role nouns in Czech, English, French, German, Italian, Norwegian, and Slovak. Behavior Research Methods, 46(3), 841-871. doi:10.3758/s13428-013-0409-z.

    Abstract

    We collected norms on the gender stereotypicality of an extensive list of role nouns in Czech, English, French, German, Italian, Norwegian, and Slovak, to be used as a basis for the selection of stimulus materials in future studies. We present a Web-based tool (available at https://www.unifr.ch/lcg/) that we developed to collect these norms and that we expect to be useful for other researchers, as well. In essence, we provide (a) gender stereotypicality norms across a number of languages and (b) a tool to facilitate cross-language as well as cross-cultural comparisons when researchers are interested in the investigation of the impact of stereotypicality on the processing of role nouns.
  • Misersky, J., Slivac, K., Hagoort, P., & Flecken, M. (2021). The State of the Onion: Grammatical aspect modulates object representation during event comprehension. Cognition, 214: 104744. doi:10.1016/j.cognition.2021.104744.

    Abstract

    The present ERP study assessed whether grammatical aspect is used as a cue in online event comprehension, in particular when reading about events in which an object is visually changed. While perfective aspect cues holistic event representations, including an event's endpoint, progressive aspect highlights intermediate phases of an event. In a 2 × 3 design, participants read SVO sentences describing a change-of-state event (e.g., to chop an onion), with grammatical Aspect manipulated (perfective “chopped” vs progressive “was chopping”). Thereafter, they saw a Picture of an object either having undergone substantial state-change (SC; a chopped onion), no state-change (NSC; an onion in its original state) or an unrelated object (U; a cactus, acting as control condition). Their task was to decide whether the object in the Picture was mentioned in the sentence. We focused on N400 modulation, with ERPs time-locked to picture onset. U pictures elicited an N400 response as expected, suggesting detection of categorical mismatches in object type. For SC and NSC pictures, a whole-head follow-up analysis revealed a P300, implying people were engaged in detailed evaluation of pictures of matching objects. SC pictures received most positive responses overall. Crucially, there was an interaction of Aspect and Picture: SC pictures resulted in a higher amplitude P300 after sentences in the perfective compared to the progressive. Thus, while the perfective cued for a holistic event representation, including the resultant state of the affected object (i.e., the chopped onion) constraining object representations online, the progressive defocused event completion and object-state change. Grammatical aspect thus guided online event comprehension by cueing the visual representation(s) of an object's state.
  • Misra, S. (2021). Real-time dynamic fur and hair simulation using verlet integration. International Journal of Scientific and Research Publication (IJSRP), 11(2), 444-450. doi:10.29322/IJSRP.11.02.2021.p11053.

    Abstract

    Throughout the history of game development, the physics behind the real-time hair simulation has continued to pose a challenge due to lack of availability of computational resources required by the system. Unlike rendering an animation, where the requirement of real-time simulation is absent, game hair physics needs more efficiency when it comes to utilization of computational resources. Generally, for making a hair strand mesh, a cylinder or a capsule mesh is an obvious choice despite its requirement of a higher number of draw calls or resources. This paper proposes the use of an innovative and highly efficient use of quad polygons, whose normals face the render in conjunction with the use of Verlet integration, which delivers optimal results by keeping the frames per second (FPS) stable. Additionally, the proposed physics also allows for physical forces, such as gravity and wind, to affect hair movement as well as simulate a natural curl in the hair strand.
  • Mitterer, H., & McQueen, J. M. (2009). Foreign subtitles help but native-language subtitles harm foreign speech perception. PLoS ONE, 4(11), e7785. doi:10.1371/journal.pone.0007785.

    Abstract

    Understanding foreign speech is difficult, in part because of unusual mappings between sounds and words. It is known that listeners in their native language can use lexical knowledge (about how words ought to sound) to learn how to interpret unusual speech-sounds. We therefore investigated whether subtitles, which provide lexical information, support perceptual learning about foreign speech. Dutch participants, unfamiliar with Scottish and Australian regional accents of English, watched Scottish or Australian English videos with Dutch, English or no subtitles, and then repeated audio fragments of both accents. Repetition of novel fragments was worse after Dutch-subtitle exposure but better after English-subtitle exposure. Native-language subtitles appear to create lexical interference, but foreign-language subtitles assist speech learning by indicating which words (and hence sounds) are being spoken.
  • Mitterer, H., & McQueen, J. M. (2009). Processing reduced word-forms in speech perception using probabilistic knowledge about speech production. Journal of Experimental Psychology: Human Perception and Performance, 35(1), 244-263. doi:10.1037/a0012730.

    Abstract

    Two experiments examined how Dutch listeners deal with the effects of connected-speech processes, specifically those arising from word-final /t/ reduction (e.g., whether Dutch [tas] is tas, bag, or a reduced-/t/ version of tast, touch). Eye movements of Dutch participants were tracked as they looked at arrays containing 4 printed words, each associated with a geometrical shape. Minimal pairs (e.g., tas/tast) were either both above (boven) or both next to (naast) different shapes. Spoken instructions (e.g., “Klik op het woordje tas boven de ster,” [Click on the word bag above the star]) thus became unambiguous only on their final words. Prior to disambiguation, listeners' fixations were drawn to /t/-final words more when boven than when naast followed the ambiguous sequences. This behavior reflects Dutch speech-production data: /t/ is reduced more before /b/ than before /n/. We thus argue that probabilistic knowledge about the effect of following context in speech production is used prelexically in perception to help resolve lexical ambiguities caused by continuous-speech processes.
  • Mitterer, H., Horschig, J. M., Müsseler, J., & Majid, A. (2009). The influence of memory on perception: It's not what things look like, it's what you call them. Journal of Experimental Psychology: Learning, Memory, and Cognition, 35(6), 1557-1562. doi:10.1037/a0017019.

    Abstract

    World knowledge influences how we perceive the world. This study shows that this influence is at least partly mediated by declarative memory. Dutch and German participants categorized hues from a yellow-to-orange continuum on stimuli that were prototypically orange or yellow and that were also associated with these color labels. Both groups gave more “yellow” responses if an ambiguous hue occurred on a prototypically yellow stimulus. The language groups were also tested on a stimulus (traffic light) that is associated with the label orange in Dutch and with the label yellow in German, even though the objective color is the same for both populations. Dutch observers categorized this stimulus as orange more often than German observers, in line with the assumption that declarative knowledge mediates the influence of world knowledge on color categorization.

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  • Moisik, S. R., Lin, H., & Esling, J. H. (2014). A study of laryngeal gestures in Mandarin citation tones using simultaneous laryngoscopy and laryngeal ultrasound (SLLUS). Journal of the International Phonetic Association, 44, 21-58. doi:10.1017/S0025100313000327.

    Abstract

    In this work, Mandarin tone production is examined using simultaneous laryngoscopy and laryngeal ultrasound (SLLUS). Laryngoscopy is used to obtain information about laryngeal state, and laryngeal ultrasound is used to quantify changes in larynx height. With this methodology, several observations are made concerning the production of Mandarin tone in citation form. Two production strategies are attested for low tone production: (i) larynx lowering and (ii) larynx raising with laryngeal constriction. Another finding is that the larynx rises continually during level tone production, which is interpreted as a means to compensate for declining subglottal pressure. In general, we argue that larynx height plays a supportive role in facilitating f0 change under circumstances where intrinsic mechanisms for f0 control are insufficient to reach tonal targets due to vocal fold inertia. Activation of the laryngeal constrictor can be used to achieve low tone targets through mechanical adjustment to vocal fold dynamics. We conclude that extra-glottal laryngeal mechanisms play important roles in facilitating the production of tone targets and should be integrated into the contemporary articulatory model of tone production
  • Moisik, S. R., & Esling, J. H. (2014). Modeling biomechanical influence of epilaryngeal stricture on the vocal folds: A low-dimensional model of vocal-ventricular coupling. Journal of Speech, Language, and Hearing Research, 57, S687-S704. doi:10.1044/2014_JSLHR-S-12-0279.

    Abstract

    Purpose: Physiological and phonetic studies suggest that, at moderate levels of epilaryngeal stricture, the ventricular folds impinge upon the vocal folds and influence their dynamical behavior, which is thought to be responsible for constricted laryngeal sounds. In this work, the authors examine this hypothesis through biomechanical modeling. Method: The dynamical response of a low-dimensional, lumped-element model of the vocal folds under the influence of vocal-ventricular fold coupling was evaluated. The model was assessed for F0 and cover-mass phase difference. Case studies of simulations of different constricted phonation types and of glottal stop illustrate various additional aspects of model performance. Results: Simulated vocal-ventricular fold coupling lowers F0 and perturbs the mucosal wave. It also appears to reinforce irregular patterns of oscillation, and it can enhance laryngeal closure in glottal stop production. Conclusion: The effects of simulated vocal-ventricular fold coupling are consistent with sounds, such as creaky voice, harsh voice, and glottal stop, that have been observed to involve epilaryngeal stricture and apparent contact between the vocal folds and ventricular folds. This supports the view that vocal-ventricular fold coupling is important in the vibratory dynamics of such sounds and, furthermore, suggests that these sounds may intrinsically require epilaryngeal stricture
  • Montero-Melis, G. (2021). Consistency in motion event encoding across languages. Frontiers in Psychology, 12: 625153. doi:10.3389/fpsyg.2021.625153.

    Abstract

    Syntactic templates serve as schemas, allowing speakers to describe complex events in a systematic fashion. Motion events have long served as a prime example of how different languages favor different syntactic frames, in turn biasing their speakers towards different event conceptualizations. However, there is also variability in how motion events are syntactically framed within languages. Here we measure the consistency in event encoding in two languages, Spanish and Swedish. We test a dominant account in the literature, namely that variability within a language can be explained by specific properties of the events. This event-properties account predicts that descriptions of one and the same event should be consistent within a language, even in languages where there is overall variability in the use of syntactic frames. Spanish and Swedish speakers (N=84) described 32 caused motion events. While the most frequent syntactic framing in each language was as expected based on typology (Spanish: verb-framed, Swedish: satellite-framed, cf. Talmy, 2000), Swedish descriptions were substantially more consistent than Spanish descriptions. Swedish speakers almost invariably encoded all events with a single syntactic frame and systematically conveyed manner of motion. Spanish descriptions, in contrast, varied much more regarding syntactic framing and expression of manner. Crucially, variability in Spanish descriptions was not mainly a function of differences between events, as predicted by the event-properties account. Rather, Spanish variability in syntactic framing was driven by speaker biases. A similar picture arose for whether Spanish descriptions expressed manner information or not: Even after accounting for the effect of syntactic choice, a large portion of the variance in Spanish manner encoding remained attributable to differences among speakers. The results show that consistency in motion event encoding starkly differs across languages: Some languages (like Swedish) bias their speakers towards a particular linguistic event schema much more than others (like Spanish). Implications of these findings are discussed with respect to the typology of event framing, theories on the relationship between language and thought, and speech planning. In addition, the tools employed here to quantify variability can be applied to other domains of language.

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  • Moreno Santillán, D. D., Lama, T. M., Gutierrez Guerrero, Y. T., Brown, A. M., Donat, P., Zhao, H., Rossiter, S. J., Yohe, L. R., Potter, J. H., Teeling, E. C., Vernes, S. C., Davies, K. T. J., Myers, E., Hughes, G. M., Huang, Z., Hoffmann, F., Corthals, A. P., Ray, D. A., & Dávalos, L. M. (2021). Large‐scale genome sampling reveals unique immunity and metabolic adaptations in bats. Molecular Ecology, 30(23), 6449-6467. doi:10.1111/mec.16027.

    Abstract

    Comprising more than 1,400 species, bats possess adaptations unique among mammals including powered flight, unexpected longevity, and extraordinary immunity. Some of the molecular mechanisms underlying these unique adaptations includes DNA repair, metabolism and immunity. However, analyses have been limited to a few divergent lineages, reducing the scope of inferences on gene family evolution across the Order Chiroptera. We conducted an exhaustive comparative genomic study of 37 bat species, one generated in this study, encompassing a large number of lineages, with a particular emphasis on multi-gene family evolution across immune and metabolic genes. In agreement with previous analyses, we found lineage-specific expansions of the APOBEC3 and MHC-I gene families, and loss of the proinflammatory PYHIN gene family. We inferred more than 1,000 gene losses unique to bats, including genes involved in the regulation of inflammasome pathways such as epithelial defense receptors, the natural killer gene complex and the interferon-gamma induced pathway. Gene set enrichment analyses revealed genes lost in bats are involved in defense response against pathogen-associated molecular patterns and damage-associated molecular patterns. Gene family evolution and selection analyses indicate bats have evolved fundamental functional differences compared to other mammals in both innate and adaptive immune system, with the potential to enhance anti-viral immune response while dampening inflammatory signaling. In addition, metabolic genes have experienced repeated expansions related to convergent shifts to plant-based diets. Our analyses support the hypothesis that, in tandem with flight, ancestral bats had evolved a unique set of immune adaptations whose functional implications remain to be explored.

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  • Morgan, A., Braden, R., Wong, M. M. K., Colin, E., Amor, D., Liégeois, F., Srivastava, S., Vogel, A., Bizaoui, V., Ranguin, K., Fisher, S. E., & Van Bon, B. W. (2021). Speech and language deficits are central to SETBP1 haploinsufficiency disorder. European Journal of Human Genetics, 29, 1216-1225. doi:10.1038/s41431-021-00894-x.

    Abstract

    Expressive communication impairment is associated with haploinsufficiency of SETBP1, as reported in small case series. Heterozygous pathogenic loss-of-function (LoF) variants in SETBP1 have also been identified in independent cohorts ascertained for childhood apraxia of speech (CAS), warranting further investigation of the roles of this gene in speech development. Thirty-one participants (12 males, aged 0; 8–23; 2 years, 28 with pathogenic SETBP1 LoF variants, 3 with 18q12.3 deletions) were assessed for speech, language and literacy abilities. Broader development was examined with standardised motor, social and daily life skills assessments. Gross and fine motor deficits (94%) and intellectual impairments (68%) were common. Protracted and aberrant speech development was consistently seen, regardless of motor or intellectual ability. We expand the linguistic phenotype associated with SETBP1 LoF syndrome (SETBP1 haploinsufficiency disorder), revealing a striking speech presentation that implicates both motor (CAS, dysarthria) and language (phonological errors) systems, with CAS (80%) being the most common diagnosis. In contrast to past reports, the understanding of language was rarely better preserved than language expression (29%). Language was typically low, to moderately impaired, with commensurate expression and comprehension ability. Children were sociable with a strong desire to communicate. Minimally verbal children (32%) augmented speech with sign language, gestures or digital devices. Overall, relative to general development, spoken language and literacy were poorer than social, daily living, motor and adaptive behaviour skills. Our findings show that poor communication is a central feature of SETBP1 haploinsufficiency disorder, confirming this gene as a strong candidate for speech and language disorders.

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