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Galke, L., Vagliano, I., Franke, B., Zielke, T., & Scherp, A. (2023). Lifelong learning on evolving graphs under the constraints of imbalanced classes and new classes. Neural networks, 164, 156-176. doi:10.1016/j.neunet.2023.04.022.
Abstract
Lifelong graph learning deals with the problem of continually adapting graph neural network (GNN) models to changes in evolving graphs. We address two critical challenges of lifelong graph learning in this work: dealing with new classes and tackling imbalanced class distributions. The combination of these two challenges is particularly relevant since newly emerging classes typically resemble only a tiny fraction of the data, adding to the already skewed class distribution. We make several contributions: First, we show that the amount of unlabeled data does not influence the results, which is an essential prerequisite for lifelong learning on a sequence of tasks. Second, we experiment with different label rates and show that our methods can perform well with only a tiny fraction of annotated nodes. Third, we propose the gDOC method to detect new classes under the constraint of having an imbalanced class distribution. The critical ingredient is a weighted binary cross-entropy loss function to account for the class imbalance. Moreover, we demonstrate combinations of gDOC with various base GNN models such as GraphSAGE, Simplified Graph Convolution, and Graph Attention Networks. Lastly, our k-neighborhood time difference measure provably normalizes the temporal changes across different graph datasets. With extensive experimentation, we find that the proposed gDOC method is consistently better than a naive adaption of DOC to graphs. Specifically, in experiments using the smallest history size, the out-of-distribution detection score of gDOC is 0.09 compared to 0.01 for DOC. Furthermore, gDOC achieves an Open-F1 score, a combined measure of in-distribution classification and out-of-distribution detection, of 0.33 compared to 0.25 of DOC (32% increase). -
Galke, L., & Scherp, A. (2022). Bag-of-words vs. graph vs. sequence in text classification: Questioning the necessity of text-graphs and the surprising strength of a wide MLP. In S. Muresan, P. Nakov, & A. Villavicencio (
Eds. ), Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (pp. 4038-4051). Dublin: Association for Computational Linguistics. doi:10.18653/v1/2022.acl-long.279. -
Galke, L., Cuber, I., Meyer, C., Nölscher, H. F., Sonderecker, A., & Scherp, A. (2022). General cross-architecture distillation of pretrained language models into matrix embedding. In Proceedings of the IEEE Joint Conference on Neural Networks (IJCNN 2022), part of the IEEE World Congress on Computational Intelligence (WCCI 2022). doi:10.1109/IJCNN55064.2022.9892144.
Abstract
Large pretrained language models (PreLMs) are rev-olutionizing natural language processing across all benchmarks. However, their sheer size is prohibitive for small laboratories or for deployment on mobile devices. Approaches like pruning and distillation reduce the model size but typically retain the same model architecture. In contrast, we explore distilling PreLMs into a different, more efficient architecture, Continual Multiplication of Words (CMOW), which embeds each word as a matrix and uses matrix multiplication to encode sequences. We extend the CMOW architecture and its CMOW/CBOW-Hybrid variant with a bidirectional component for more expressive power, per-token representations for a general (task-agnostic) distillation during pretraining, and a two-sequence encoding scheme that facilitates downstream tasks on sentence pairs, such as sentence similarity and natural language inference. Our matrix-based bidirectional CMOW/CBOW-Hybrid model is competitive to DistilBERT on question similarity and recognizing textual entailment, but uses only half of the number of parameters and is three times faster in terms of inference speed. We match or exceed the scores of ELMo for all tasks of the GLUE benchmark except for the sentiment analysis task SST-2 and the linguistic acceptability task CoLA. However, compared to previous cross-architecture distillation approaches, we demonstrate a doubling of the scores on detecting linguistic acceptability. This shows that matrix-based embeddings can be used to distill large PreLM into competitive models and motivates further research in this direction. -
Vagliano, I., Galke, L., & Scherp, A. (2022). Recommendations for item set completion: On the semantics of item co-occurrence with data sparsity, input size, and input modalities. Information Retrieval Journal, 25(3), 269-305. doi:10.1007/s10791-022-09408-9.
Abstract
We address the problem of recommending relevant items to a user in order to "complete" a partial set of items already known. We consider the two scenarios of citation and subject label recommendation, which resemble different semantics of item co-occurrence: relatedness for co-citations and diversity for subject labels. We assess the influence of the completeness of an already known partial item set on the recommender performance. We also investigate data sparsity through a pruning parameter and the influence of using additional metadata. As recommender models, we focus on different autoencoders, which are particularly suited for reconstructing missing items in a set. We extend autoencoders to exploit a multi-modal input of text and structured data. Our experiments on six real-world datasets show that supplying the partial item set as input is helpful when item co-occurrence resembles relatedness, while metadata are effective when co-occurrence implies diversity. This outcome means that the semantics of item co-occurrence is an important factor. The simple item co-occurrence model is a strong baseline for citation recommendation. However, autoencoders have the advantage to enable exploiting additional metadata besides the partial item set as input and achieve comparable performance. For the subject label recommendation task, the title is the most important attribute. Adding more input modalities sometimes even harms the result. In conclusion, it is crucial to consider the semantics of the item co-occurrence for the choice of an appropriate recommendation model and carefully decide which metadata to exploit. -
Galke, L., Franke, B., Zielke, T., & Scherp, A. (2021). Lifelong learning of graph neural networks for open-world node classification. In Proceedings of the 2021 International Joint Conference on Neural Networks (IJCNN). Piscataway, NJ: IEEE. doi:10.1109/IJCNN52387.2021.9533412.
Abstract
Graph neural networks (GNNs) have emerged as the standard method for numerous tasks on graph-structured data such as node classification. However, real-world graphs are often evolving over time and even new classes may arise. We model these challenges as an instance of lifelong learning, in which a learner faces a sequence of tasks and may take over knowledge acquired in past tasks. Such knowledge may be stored explicitly as historic data or implicitly within model parameters. In this work, we systematically analyze the influence of implicit and explicit knowledge. Therefore, we present an incremental training method for lifelong learning on graphs and introduce a new measure based on k-neighborhood time differences to address variances in the historic data. We apply our training method to five representative GNN architectures and evaluate them on three new lifelong node classification datasets. Our results show that no more than 50% of the GNN's receptive field is necessary to retain at least 95% accuracy compared to training over the complete history of the graph data. Furthermore, our experiments confirm that implicit knowledge becomes more important when fewer explicit knowledge is available. -
Galke, L., Seidlmayer, E., Lüdemann, G., Langnickel, L., Melnychuk, T., Förstner, K. U., Tochtermann, K., & Schultz, C. (2021). COVID-19++: A citation-aware Covid-19 dataset for the analysis of research dynamics. In Y. Chen, H. Ludwig, Y. Tu, U. Fayyad, X. Zhu, X. Hu, S. Byna, X. Liu, J. Zhang, S. Pan, V. Papalexakis, J. Wang, A. Cuzzocrea, & C. Ordonez (
Eds. ), Proceedings of the 2021 IEEE International Conference on Big Data (pp. 4350-4355). Piscataway, NJ: IEEE.Abstract
COVID-19 research datasets are crucial for analyzing research dynamics. Most collections of COVID-19 research items do not to include cited works and do not have annotations
from a controlled vocabulary. Starting with ZB MED KE data on COVID-19, which comprises CORD-19, we assemble a new dataset that includes cited work and MeSH annotations for all records. Furthermore, we conduct experiments on the analysis of research dynamics, in which we investigate predicting links in a co-annotation graph created on the basis of the new dataset. Surprisingly, we find that simple heuristic methods are better at
predicting future links than more sophisticated approaches such as graph neural networks. -
Melnychuk, T., Galke, L., Seidlmayer, E., Förster, K. U., Tochtermann, K., & Schultz, C. (2021). Früherkennung wissenschaftlicher Konvergenz im Hochschulmanagement. Hochschulmanagement, 16(1), 24-28.
Abstract
It is crucial for universities to recognize early signals of scientific convergence. Scientific convergence describes a dynamic pattern where the distance between different fields of knowledge shrinks over time. This knowledge
space is beneficial to radical innovations and new promising research topics. Research in converging areas of knowledge can therefore allow universities to establish a leading position in the science community.
The Q-AKTIV project develops a new approach on the basis of machine learning to identify scientific convergence at an early stage. In this work, we briefly present this approach and the first results of empirical validation. We discuss the benefits of an instrument building on our approach for the strategic management of universities and
other research institutes.
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