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Quaresima, A., Fitz, H., Duarte, R., Van den Broek, D., Hagoort, P., & Petersson, K. M. (2023). The Tripod neuron: A minimal structural reduction of the dendritic tree. The Journal of Physiology, 601(15), 3007-3437. doi:10.1113/JP283399.
Abstract
Neuron models with explicit dendritic dynamics have shed light on mechanisms for coincidence detection, pathway selection and temporal filtering. However, it is still unclear which morphological and physiological features are required to capture these phenomena. In this work, we introduce the Tripod neuron model and propose a minimal structural reduction of the dendritic tree that is able to reproduce these computations. The Tripod is a three-compartment model consisting of two segregated passive dendrites and a somatic compartment modelled as an adaptive, exponential integrate-and-fire neuron. It incorporates dendritic geometry, membrane physiology and receptor dynamics as measured in human pyramidal cells. We characterize the response of the Tripod to glutamatergic and GABAergic inputs and identify parameters that support supra-linear integration, coincidence-detection and pathway-specific gating through shunting inhibition. Following NMDA spikes, the Tripod neuron generates plateau potentials whose duration depends on the dendritic length and the strength of synaptic input. When fitted with distal compartments, the Tripod encodes previous activity into a dendritic depolarized state. This dendritic memory allows the neuron to perform temporal binding, and we show that it solves transition and sequence detection tasks on which a single-compartment model fails. Thus, the Tripod can account for dendritic computations previously explained only with more detailed neuron models or neural networks. Due to its simplicity, the Tripod neuron can be used efficiently in simulations of larger cortical circuits. -
Fitz, H., Uhlmann, M., Van den Broek, D., Duarte, R., Hagoort, P., & Petersson, K. M. (2020). Neuronal spike-rate adaptation supports working memory in language processing. Proceedings of the National Academy of Sciences of the United States of America, 117(34), 20881-20889. doi:10.1073/pnas.2000222117.
Abstract
Language processing involves the ability to store and integrate pieces of
information in working memory over short periods of time. According to
the dominant view, information is maintained through sustained, elevated
neural activity. Other work has argued that short-term synaptic facilitation
can serve as a substrate of memory. Here, we propose an account where
memory is supported by intrinsic plasticity that downregulates neuronal
firing rates. Single neuron responses are dependent on experience and we
show through simulations that these adaptive changes in excitability pro-
vide memory on timescales ranging from milliseconds to seconds. On this
account, spiking activity writes information into coupled dynamic variables
that control adaptation and move at slower timescales than the membrane
potential. From these variables, information is continuously read back into
the active membrane state for processing. This neuronal memory mech-
anism does not rely on persistent activity, excitatory feedback, or synap-
tic plasticity for storage. Instead, information is maintained in adaptive
conductances that reduce firing rates and can be accessed directly with-
out cued retrieval. Memory span is systematically related to both the time
constant of adaptation and baseline levels of neuronal excitability. Inter-
ference effects within memory arise when adaptation is long-lasting. We
demonstrate that this mechanism is sensitive to context and serial order
which makes it suitable for temporal integration in sequence processing
within the language domain. We also show that it enables the binding of
linguistic features over time within dynamic memory registers. This work
provides a step towards a computational neurobiology of language. -
Duarte, R., Uhlmann, M., Van den Broek, D., Fitz, H., Petersson, K. M., & Morrison, A. (2018). Encoding symbolic sequences with spiking neural reservoirs. In Proceedings of the 2018 International Joint Conference on Neural Networks (IJCNN). doi:10.1109/IJCNN.2018.8489114.
Abstract
Biologically inspired spiking networks are an important tool to study the nature of computation and cognition in neural systems. In this work, we investigate the representational capacity of spiking networks engaged in an identity mapping task. We compare two schemes for encoding symbolic input, one in which input is injected as a direct current and one where input is delivered as a spatio-temporal spike pattern. We test the ability of networks to discriminate their input as a function of the number of distinct input symbols. We also compare performance using either membrane potentials or filtered spike trains as state variable. Furthermore, we investigate how the circuit behavior depends on the balance between excitation and inhibition, and the degree of synchrony and regularity in its internal dynamics. Finally, we compare different linear methods of decoding population activity onto desired target labels. Overall, our results suggest that even this simple mapping task is strongly influenced by design choices on input encoding, state-variables, circuit characteristics and decoding methods, and these factors can interact in complex ways. This work highlights the importance of constraining computational network models of behavior by available neurobiological evidence.
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