Publications

Abstract

Mutations of the epidermal growth factor receptor (EGFR) gene are found at a relatively high frequency in glioma, with the most common being the de2-7 EGFR (or EGFRvIII). This mutation arises from an in-frame deletion of exons 2-7, which removes 267 amino acids from the extracellular domain of the receptor. Despite being unable to bind ligand, the de2-7 EGFR is constitutively active at a low level. Transfection of human glioma cells with the de2-7 EGFR has little effect in vitro, but when grown as tumor xenografts this mutated receptor imparts a dramatic growth advantage. We mapped the phosphorylation pattern of de2-7 EGFR, both in vivo and in vitro, using a panel of antibodies specific for different phosphorylated tyrosine residues. Phosphorylation of de2-7 EGFR was detected constitutively at all tyrosine sites surveyed in vitro and in vivo, including tyrosine 845, a known target in the wild-type EGFR for src kinase. There was a substantial upregulation of phosphorylation at every yrosine residue of the de2-7 EGFR when cells were grown in vivo compared to the receptor isolated from cells cultured in vitro. Upregulation of phosphorylation at tyrosine 845 could be stimulated in vitro by the addition of specific components of the ECM via an integrindependent mechanism. These observations may partially explain why the growth enhancement mediated by de2-7 EGFR is largely restricted to the in vivo environment

Abstract

The present paper describes the development of the languagesindanger.eu interactive website as an example of including multimedia language resources to disseminate knowledge and create educational material on less-resourced languages. The website is a product of INNET (Innovative networking in infrastructure for endangered languages), European FP7 project. Its main functions can be summarized as related to the three following areas: (1) raising students' awareness of language endangerment and arouse their interest in linguistic diversity, language maintenance and language documentation; (2) informing both students and teachers about these topics and show ways how they can enlarge their knowledge further with a special emphasis on information about language archives; (3) helping teachers include these topics into their classes. The website has been localized into five language versions with the intention to be accessible to both scientific and non-scientific communities such as (primarily) secondary school teachers and students, beginning university students of linguistics, journalists, the interested public, and also members of speech communities who speak minority languages

Abstract

It has been suggested that some individuals may benefit more from social robots than do others. Using second
language (L2) as an example, the present study examined how individual differences in attitudes toward robots and personality
traits may be related to learning outcomes. Preliminary results with 24 Turkish-speaking adults suggest that negative attitudes
toward robots, more specifically thoughts and anxiety about the negative social impact that robots may have on the society,
predicted how well adults learned L2 words from a social robot. The possible implications of the findings as well as future directions are also discussed

Abstract

Human speakers often produce sentences incrementally. They can start speaking having in mind only a fragmentary idea of what they want to say, and while saying this they refine the contents underlying subsequent parts of the utterance. This capability imposes a number of constraints on the design of a syntactic processor. This paper explores these constraints and evaluates some recent computational sentence generators from the perspective of incremental production.

Abstract

This dissertation investigates two seemingly contradictory properties of the speech perception system. On the one hand, listeners are extremely sensitive to the fine phonetic details in the speech signal. These subtle acoustic cues can reduce the temporal ambiguity between words that show initial segmental overlap, and can guide lexical activation. On the other hand, comprehension does not seem to be hampered at all by the drastic reductions that typically occur in casual speech. Complete segments, and sometimes even complete syllables, may be missing, but comprehension is seemingly unaffected. This thesis aims at elucidating how words are represented and accessed in the mental lexicon, by investigating these contradictory phenomena for the domain of morphology

Abstract

The previous literature has suggested that the hand movement in co-speech gestures and signs consists of a series of phases with qualitatively different dynamic characteristics. In this paper, we propose a syntagmatic rule system for movement phases that applies to both co-speech gestures and signs. Descriptive criteria for the rule system were developed for the analysis video-recorded continuous production of signs and gesture. It involves segmenting a stream of body movement into phases and identifying different phase types. Two human coders used the criteria to analyze signs and cospeech gestures that are produced in natural discourse. It was found that the criteria yielded good inter-coder reliability. These criteria can be used for the technology of automatic recognition of signs and co-speech gestures in order to segment continuous production and identify the potentially meaningbearing phase.

Abstract

The VALID Data Archive is an open multimedia data archive (under construction) with data from speakers suffering from language impairments. We report on a pilot project in the CLARIN-NL framework in which five data resources were curated. For all data sets concerned, written informed consent from the participants or their caretakers has been obtained. All materials were anonymized. The audio files were converted into wav (linear PCM) files and the transcriptions into CHAT or ELAN format. Research data that consisted of test, SPSS and Excel files were documented and converted into CSV files. All data sets obtained appropriate CMDI metadata files. A new CMDI metadata profile for this type of data resources was established and care was taken that ISOcat metadata categories were used to optimize interoperability. After curation all data are deposited at the Max Planck Institute for Psycholinguistics Nijmegen where persistent identifiers are linked to all resources. The content of the transcriptions in CHAT and plain text format can be searched with the TROVA search engine

Abstract

A recurrently connected attractor neural network with a Hebbian learning rule is currently our best ANN analogy for a piece cortex. Functionally biological memory operates on a spectrum of time scales with regard to induction and retention, and it is modulated in complex ways by sub-cortical neuromodulatory systems. Moreover, biological memory networks are commonly believed to be highly distributed and engage many co-operating cortical areas. Here we focus on the temporal aspects of induction and retention of memory in a connectionist type attractor memory model of a piece of cortex. A continuous time, forgetful Bayesian-Hebbian learning rule is described and compared to the characteristics of LTP and LTD seen experimentally. More generally, an attractor network implementing this learning rule can operate as a long-term, intermediate-term, or short-term memory. Modulation of the print-now signal of the learning rule replicates some experimental memory phenomena, like e.g. the von Restorff effect.

Abstract

Citations play a crucial role in the scientific discourse, in information retrieval, and in bibliometrics. Many initiatives are currently promoting the idea of having free and open citation data. Creation of citation data, however, is not part of the cataloging workflow in libraries nowadays.
In this paper, we present our project Linked Open Citation Database, in which we design distributed processes and a system infrastructure based on linked data technology. The goal is to show that efficiently cataloging citations in libraries using a semi-automatic approach is possible. We specifically describe the current state of the workflow and its implementation. We show that we could significantly improve the automatic reference extraction that is crucial for the subsequent data curation. We further give insights on the curation and linking process and provide evaluation results that not only direct the further development of the project, but also allow us to discuss its overall feasibility.

Abstract

It is widely held that smells and flavors are impossible to put into words. In this paper we test this claim by seeking predictive patterns in wine reviews, which ostensibly aim to provide guides to perceptual content. Wine reviews have previously been critiqued as random and meaningless. We collected an English corpus of wine reviews with their structured metadata, and applied machine learning techniques to automatically predict the wine's color, grape variety, and country of origin. To train the three supervised classifiers, three different information sources were incorporated: lexical bag-of-words features, domain-specific terminology features, and semantic word embedding features. In addition, using regression analysis we investigated basic review properties, i.e., review length, average word length, and their relationship to the scalar values of price and review score. Our results show that wine experts do share a common vocabulary to describe wines and they use this in a consistent way, which makes it possible to automatically predict wine characteristics based on the review text alone. This means that odors and flavors may be more expressible in language than typically acknowledged.

Abstract

Evolution and changes of all modern languages is a wellknown fact. However, recently it is reaching dynamics never seen before, which results in loss of the vast amount of information encoded in every language. In order to preserve such rich heritage, and to carry out linguistic research, properly annotated recordings of world languages are necessary. Since creating those annotations is a very laborious task, reaching times 100 longer than the length of the annotated media, innovative video processing algorithms are needed, in order to improve the efficiency and quality of annotation process. This is the scope of the AVATecH project presented in this article

Abstract

People's language is shaped by the input from the environment. The environment, however, offers a range of linguistic inputs that differ in their reliability. We test whether listeners accordingly weigh input from sources that differ in reliability differently. Using a perceptual learning paradigm, we show that listeners adjust their representations according to linguistic input provided by native but not by non-native speakers. This is despite the fact that listeners are able to learn the characteristics of the speech of both speakers. These results provide evidence for a disassociation between adaptation to the characteristic of specific speakers and adjustment of linguistic representations in general based on these learned characteristics. This study also has implications for theories of language change. In particular, it cast doubts on the hypothesis that a large proportion of non-native speakers in a community can bring about linguistic changes

Abstract

PHD thesis, defended at the University of Leiden

Abstract

This study investigates prosodic marking of focus in Bai, a Sino-Tibetan language spoken in the Southwest of China, by adopting a semi-spontaneous experimental approach. Our data show that Bai speakers increase the duration of the focused constituent and reduce the duration of the post-focus constituent to encode focus. However, duration is not used in Bai to distinguish focus types differing in size and contrastivity. Further, pitch plays no role in signaling focus and differentiating focus types. The results thus suggest that Bai uses prosody to mark focus, but to a lesser extent, compared to Mandarin Chinese, with which Bai has been in close contact for centuries, and Cantonese, to which Bai is similar in the tonal system, although Bai is similar to Cantonese in its reliance on duration in prosodic focus marking.

Abstract

We present the Narrative Brain Dataset, an fMRI dataset that was collected during spoken presentation of short excerpts of three
stories in Dutch. Together with the brain imaging data, the dataset contains the written versions of the stimulation texts. The texts are
accompanied with stochastic (perplexity and entropy) and semantic computational linguistic measures. The richness and unconstrained
nature of the data allows the study of language processing in the brain in a more naturalistic setting than is common for fMRI studies.
We hope that by making NBD available we serve the double purpose of providing useful neural data to researchers interested in natural
language processing in the brain and to further stimulate data sharing in the field of neuroscience of language.

Abstract

For (semi-)automated subject indexing systems in digital libraries, it is often more practical to use metadata such as the title of a publication instead of the full-text or the abstract. Therefore, it is desirable to have good text mining and text classification algorithms that operate well already on the title of a publication. So far, the classification performance on titles is not competitive with the performance on the full-texts if the same number of training samples is used for training. However, it is much easier to obtain title data in large quantities and to use it for training than full-text data. In this paper, we investigate the question how models obtained from training on increasing amounts of title training data compare to models from training on a constant number of full-texts. We evaluate this question on a large-scale dataset from the medical domain (PubMed) and from economics (EconBiz). In these datasets, the titles and annotations of millions of publications are available, and they outnumber the available full-texts by a factor of 20 and 15, respectively. To exploit these large amounts of data to their full potential, we develop three strong deep learning classifiers and evaluate their performance on the two datasets. The results are promising. On the EconBiz dataset, all three classifiers outperform their full-text counterparts by a large margin. The best title-based classifier outperforms the best full-text method by 9.4%. On the PubMed dataset, the best title-based method almost reaches the performance of the best full-text classifier, with a difference of only 2.9%.

Abstract

The human body is unique: it is both an object of perception and the source of human experience. Its universality makes it a perfect resource for asking questions about how cognition, brain and typology relate to one another. For example, we can ask how speakers of different languages segment and categorize the human body. A dominant view is that body parts are “given” by visual perceptual discontinuities, and that words are merely labels for these visually determined parts (e.g., Andersen, 1978; Brown, 1976; Lakoff, 1987). However, there are problems with this view. First it ignores other perceptual information, such as somatosensory and motoric representations. By looking at the neural representations of sesnsory representations, we can test how much of the categorization of the human body can be done through perception alone. Second, we can look at language typology to see how much universality and variation there is in body-part categories. A comparison of a range of typologically, genetically and areally diverse languages shows that the perceptual view has only limited applicability (Majid, Enfield & van Staden, in press). For example, using a “coloring-in” task, where speakers of seven different languages were given a line drawing of a human body and asked to color in various body parts, Majid & van Staden (in prep) show that languages vary substantially in body part segmentation. For example, Jahai (Mon-Khmer) makes a lexical distinction between upper arm, lower arm, and hand, but Lavukaleve (Papuan Isolate) has just one word to refer to arm, hand, and leg. This shows that body part categorization is not a straightforward mapping of words to visually determined perceptual parts.

Abstract

Many studies in cognitive science address how people categorize objects, but there has been comparatively little research on event categorization. This study investigated the categorization of events involving material destruction, such as “cutting” and “breaking”. Speakers of 28 typologically, genetically, and areally diverse languages described events shown in a set of video-clips. There was considerable cross-linguistic agreement in the dimensions along which the events were distinguished, but there was variation in the number of categories and the placement of their boundaries.

Abstract

Two Siberian languages, Tundra Nenets and Tundra Yukaghir, do not obey strong island constraints in questioning: any sub-constituent of a relative or adverbial clause can be questioned. We argue that this has to do with how focusing works in these languages. The focused sub-constituent remains in situ, but there is abundant morphosyntactic evidence that the focus feature is passed up to the head of the clause. The result is the formation of a complex focus structure in which both the head and non head daughter are overtly marked as focus, and they are interpreted as a pairwise list such that the focus background is applicable to this list, but not to other alternative lists

Abstract

The results of a word-spotting experiment are presented in which Dutch listeners tried to spot different types of bisyllabic Dutch words embedded in different types of nonsense contexts. Embedded verbs were not reliably harder to spot than embedded nouns; this suggests that nouns and verbs are recognised via the same basic processes. Iambic words were no harder to spot than trochaic words, suggesting that trochaic words are not in principle easier to recognise than iambic words. Words were harder to spot in consonantal contexts (i.e., contexts which themselves could not be words) than in longer contexts which contained at least one vowel (i.e., contexts which, though not words, were possible words of Dutch). A control experiment showed that this difference was not due to acoustic differences between the words in each context. The results support the claim that spoken-word recognition is sensitive to the viability of sound sequences as possible words.

Abstract

Lexical knowledge influences how human listeners make decisions about speech sounds. Positive lexical effects (faster responses to target sounds in words than in nonwords) are robust across several laboratory tasks, while negative effects (slower responses to targets in more word-like nonwords than in less word-like nonwords) have been found in phonetic decision tasks but not phoneme monitoring tasks. The present experiments tested whether negative lexical effects are therefore a task-specific consequence of the forced choice required in phonetic decision. We compared phoneme monitoring and phonetic decision performance using the same Dutch materials in each task. In both experiments there were positive lexical effects, but no negative lexical effects. We observe that in all studies showing negative lexical effects, the materials were made by cross-splicing, which meant that they contained perceptual evidence supporting the lexically-consistent phonemes. Lexical knowledge seems to influence phonemic decision-making only when there is evidence for the lexically-consistent phoneme in the speech signal.

Abstract

We briefly describe the Merge model of phonemic decision-making, and, in the light of general arguments about the possible role of feedback in spoken-word recognition, defend Merge's feedforward structure. Merge not only accounts adequately for the data, without invoking feedback connections, but does so in a parsimonious manner.

Abstract

This thesis addressed the spoken production of complex numerals for time and space. The production of complex numerical expressions like those involved in telling time (e.g., 'quarter to four') or producing house numbers (e.g., 'two hundred forty-five') has been almost completely ignored. Yet, adult speakers produce such expressions on a regular basis in everyday communication. Thus, no theory on numerical cognition or speech production is complete without an account of the production of multi-morphemic utterances such as complex numeral expressions. The main question of this thesis is which particular speech planning levels are involved in the naming and reading of complex numerals for time and space. More specifically, this issue was investigated by examining different modes of response (clock times versus house numbers), alternative input formats (Arabic digit versus alphabetic format; analog versus digital clock displays), and different expression types (relative 'quarter to four' versus absolute 'three forty-five' time expressions).

Abstract

The ultimate goal of our research is to improve an existing speech-based computational model of human speech recognition on the task of simulating the role of fine-grained phonetic information in human speech processing. As part of this work we are investigating articulatory feature classifiers that are able to create reliable and accurate transcriptions of the articulatory behaviour encoded in the acoustic speech signal. Articulatory feature (AF) modelling of speech has received a considerable amount of attention in automatic speech recognition research. Different approaches have been used to build AF classifiers, most notably multi-layer perceptrons. Recently, deep neural networks have been applied to the task of AF classification. This paper aims to improve AF classification by investigating two different approaches: 1) investigating the usefulness of a deep Convolutional neural network (CNN) for AF classification; 2) integrating the Mel filtering operation into the CNN architecture. The results showed a remarkable improvement in classification accuracy of the CNNs over state-of-the-art AF classification results for Dutch, most notably in the minority classes. Integrating the Mel filtering operation into the CNN architecture did not further improve classification performance.

Abstract

This paper describes the pilot study of phonetic segmentation applied to Nijmegen Corpus of Casual Czech (NCCCz). This corpus contains informal speech of strong spontaneous nature which influences the character of produced speech at various levels. This work is the part of wider research related to the analysis of pronunciation reduction in such informal speech. We present the analysis of the accuracy of phonetic segmentation when canonical or reduced pronunciation is used. The achieved accuracy of realized phonetic segmentation provides information about general accuracy of proper acoustic modelling which is supposed to be applied in spontaneous speech recognition. As a byproduct of presented spontaneous speech segmentation, this paper also describes the created lexicon with canonical pronunciations of words in NCCCz, a tool supporting pronunciation check of lexicon items, and finally also a minidatabase of selected utterances from NCCCz manually labelled on phonetic level suitable for evaluation purposes

Abstract

Analyzing EEG signals recorded while participants are listening to continuous speech with the purpose of testing linguistic hypotheses is complicated by the fact that the signals simultaneously reflect exogenous acoustic excitation and endogenous linguistic processing. This makes it difficult to trace subtle differences that occur in mid-sentence position. We apply an analysis based on multivariate temporal response functions to uncover subtle mid-sentence effects. This approach is based on a per-stimulus estimate of the response of the neural system to speech input. Analyzing EEG signals predicted on the basis of the response functions might then bring to light conditionspecific differences in the filtered signals. We validate this approach by means of an analysis of EEG signals recorded with isolated word stimuli. Then, we apply the validated method to the analysis of the responses to the same words in the middle of meaningful sentences.

Abstract

This paper describes recent experimental evidence which shows that models of spoken word recognition must incorporate both inhibition between competing lexical candidates and a sensitivity to metrical cues to lexical segmentation. A new version of the Shortlist [1][2] model incorporating the Metrical Segmentation Strategy [3] provides a detailed simulation of the data.

Abstract

Two word-spotting experiments are reported that examine whether the Possible-Word Constraint (PWC) [1] is a language-specific or language-universal strategy for the segmentation of continuous speech. The PWC disfavours parses which leave an impossible residue between the end of a candidate word and a known boundary. The experiments examined cases where the residue was either a CV syllable with a lax vowel, or a CVC syllable with a schwa. Although neither syllable context is a possible word in English, word-spotting in both contexts was easier than with a context consisting of a single consonant. The PWC appears to be language-universal rather than language-specific.

Abstract

Simulations explored the inability of the TRACE model of spoken-word recognition to model the effects on human listening of subcategorical mismatch in word forms. The source of TRACE's failure lay not in interactive connectivity, not in the presence of inter-word competition, and not in the use of phonemic representations, but in the need for continuously optimised interpretation of the input. When an analogue of TRACE was allowed to cycle to asymptote on every slice of input, an acceptable simulation of the subcategorical mismatch data was achieved. Even then, however, the simulation was not as close as that produced by the Merge model, which has inter-word competition, phonemic representations and continuous optimisation (but no interactive connectivity).

Abstract

Typologies are critical tools for linguists, but typologies, like grammars, are known to leak. This book addresses the question of typological overlap from the perspective of a single language. In Lowland Chontal of Oaxaca, a language of southern Mexico, change events are expressed with three types of predicates, and each predicate type corresponds to a different language type in the well-known typology of lexicalization patterns established by Talmy and elaborated by others. O’Connor evaluates the predictive powers of the typology by examining the consequences of each predicate type in a variety of contexts, using data from narrative discourse, stimulus response, and elicitation. This is the first de­tailed look at the lexical and grammatical resources of the verbal system in Chontal and their relation to semantics of change. The analysis of how and why Chontal speakers choose among these verbal resources to achieve particular communicative and social goals serves both as a documentation of an endangered language and a theoretical contribution towards a typology of language use.

Abstract

Early studies investigating sign language acquisition claimed
that signs whose structures are motivated by the form of their
referent (iconic) are not favoured in language development.
However, recent work has shown that the first signs in deaf
children’s lexicon are iconic. In this paper we go a step
further and ask whether different types of iconicity modulate
learning sign-referent links. Results from a picture description
task indicate that children and adults used signs with two
possible variants differentially. While children signing to
adults favoured variants that map onto actions associated with
a referent (action signs), adults signing to another adult
produced variants that map onto objects’ perceptual features
(perceptual signs). Parents interacting with children used
more action variants than signers in adult-adult interactions.
These results are in line with claims that language
development is tightly linked to motor experience and that
iconicity can be a communicative strategy in parental input.

Abstract

A database is presented of relative familiarity ratings for 24 sets of Japanese words, each set comprising words overlapping in the initial portions. These ratings are useful for the generation of material sets for research in the recognition of spoken words.

Abstract

Iconic gestures are hypothesized to be c rucial to the evolution of language. Yet the important question of whether apes produce iconic gestures is the subject of considerable debate. This paper presents the current state of research on iconicity in ape gesture. In particular, it describes some of the empirical evidence suggesting that apes produce three different kinds of iconic gestures; it compares the iconicity hypothesis to other major hypotheses of ape gesture; and finally, it offers some directions for future ape gesture research

Abstract

Word count estimation (WCE) from audio recordings has a number of applications, including quantifying the amount of speech that language-learning infants hear in their natural environments, as captured by daylong recordings made with devices worn by infants. To be applicable in a wide range of scenarios and also low-resource domains, WCE tools should be extremely robust against varying signal conditions and require minimal access to labeled training data in the target domain. For this purpose, earlier work has used automatic syllabification of speech, followed by a least-squares-mapping of syllables to word counts. This paper compares a number of previously proposed syllabifiers in the WCE task, including a supervised bi-directional long short-term memory (BLSTM) network that is trained on a language for which high quality syllable annotations are available (a “high resource language”), and reports how the alternative methods compare on different languages and signal conditions. We also explore additive noise and varying-channel data augmentation strategies for BLSTM training, and show how they improve performance in both matching and mismatching languages. Intriguingly, we also find that even though the BLSTM works on languages beyond its training data, the unsupervised algorithms can still outperform it in challenging signal conditions on novel languages.

Abstract

Dediu and Levinson (2013) argue that Neandertals had essentially modern language and speech, and that they were in genetic contact with the ancestors of modern humans during our dispersal out of Africa. This raises the possibility of cultural and linguistic contact between the two human lineages. If such contact did occur, then it might have influenced the cultural evolution of the languages. Since the genetic traces of contact with Neandertals are limited to the populations outside of Africa, Dediu & Levinson predict that there may be structural differences between the present-day languages derived from languages in contact with Neanderthals, and those derived from languages that were not influenced by such contact. Since the signature of such deep contact might reside in patterns of features, they suggested that machine learning methods may be able to detect these differences. This paper attempts to test this hypothesis and to estimate particular linguistic features that are potential candidates for carrying a signature of Neandertal languages.

Abstract

Complex communication can take place in a range of modalities such as auditory, visual, and tactile modalities. In a very general way, the modality that individuals use is constrained by their biological biases (humans cannot use magnetic fields directly to communicate to each other). The majority of natural languages have a large audible component. However, since humans can learn sign languages just as easily, it’s not clear to what extent the prevalence of spoken languages is due to biological biases, the social environment or cultural inheritance. This paper suggests that we can explore the relative contribution of these factors by modelling the spontaneous emergence of sign languages that are shared by the deaf and hearing members of relatively isolated communities. Such shared signing communities have arisen in enclaves around the world and may provide useful insights by demonstrating how languages evolve as the deaf proportion of its members has strong biases towards the visual language modality. In this paper we describe a model of cultural evolution in two modalities, combining aspects that are thought to impact the emergence of sign languages in a more general evolutionary framework. The model can be used to explore hypotheses about how sign languages emerge.

Abstract

Models of cultural evolution demonstrate that the link between individual biases and population- level phenomena can be obscured by the process of cultural transmission (Kirby, Dowman, & Griffiths, 2007). However, recent extensions to these models predict that linguistic diversity will not emerge and that learners should evolve to expect little linguistic variation in their input (Smith & Thompson, 2012). We demonstrate that this result derives from assumptions that privilege certain kinds of social interaction by exploring a range of alternative social models. We find several evolutionary routes to linguistic diversity, and show that social interaction not only influences the kinds of biases which could evolve to support language, but also the effects those biases have on a linguistic system. Given the same starting situation, the evolution of biases for language learning and the distribution of linguistic variation are affected by the kinds of social interaction that a population privileges.