Publications

Displaying 201 - 300 of 450
  • Klein, W. (Ed.). (2004). Philologie auf neuen Wegen [Special Issue]. Zeitschrift für Literaturwissenschaft und Linguistik, 136.
  • Klein, W. (Ed.). (2004). Universitas [Special Issue]. Zeitschrift für Literaturwissenschaft und Linguistik (LiLi), 134.
  • Klein, W. (2004). Vom Wörterbuch zum digitalen lexikalischen System. Zeitschrift für Literaturwissenschaft und Linguistik, 136, 10-55.
  • Klein, W., & Schlieben-Lange, B. (1996). Das Ich und die Sprache. Zeitschrift für Literaturwissenschaft und Linguistik, 101, 1-5.
  • Klein, W. (1975). Eine Theorie der Wortstellungsveränderung: Einige kritische Bemerkungen zu Vennemanns Theorie der Sprachentwicklung. Linguistische Berichte, 37(75), 46-57.
  • Klein, W., & Meibauer, J. (2011). Einleitung. LiLi, Zeitschrift für Literaturwissenschaft und Linguistik, 41(162), 5-8.

    Abstract

    Nannten die Erwachsenen irgend einen Gegenstand und wandten sie sich dabei ihm zu, so nahm ich das wahr und ich begriff, daß der Gegenstand durch die Laute, die sie aussprachen, bezeichnet wurde, da sie auf ihn hinweisen wollten. Dies aber entnahm ich aus ihren Gebärden, der natürlichen Sprache aller Völker, der Sprache, die durch Mienen- und Augenspiel, durch die Bewegungen der Glieder und den Klang der Stimme die Empfindungen der Seele anzeigt, wenn diese irgend etwas begehrt, oder festhält, oder zurückweist, oder flieht. So lernte ich nach und nach verstehen, welche Dinge die Wörter bezeichneten, die ich wieder und wieder, an ihren bestimmten Stellen in verschiedenen Sätzen, aussprechen hörte. Und ich brachte, als nun mein Mund sich an diese Zeichen gewöhnt hatte, durch sie meine Wünsche zum Ausdruck. (Augustinus, Confessiones I, 8) Dies ist das Zitat eines Zitats: Zu Beginn der Philosophischen Untersuchungen führt Ludwig Wittgenstein diese Stelle aus Augustinus’ Bekenntnissen an, in denen dieser beschreibt, wie er seiner Erinnerung nach seine Muttersprache gelernt hat (Wittgenstein führt den lateinischen Text an und gibt dann seine Übersetzung, hier ist nur letztere zitiert). Sie bilden den Ausgangspunkt für Wittgensteins berühmte Überlegungen über die Funktionsweise der menschlichen Sprache und für seine Idee des Sprachspiels. Nun weiß man nicht, wie genau sich Augustinus wirklich erinnert und ob er sich all dies, wie so viel, was seither über den Spracherwerb gesagt und geschrieben wurde, bloß zurechtgelegt hat, in der Meinung, so müsse es sein. Aber anders als so vieles, was seither über den Spracherwerb gesagt und geschrieben wurde, ist es wunderbar formuliert und enthält zwei Momente, die in der wissenschaftlichen Forschung bis heute, wenn denn nicht bestritten, so doch oft nicht gesehen und dort, wo sie denn gesehen, nicht wirklich ernstgenommen wurden: A. Wir lernen die Sprache in der alltäglichen Kommunikation mit der sozialen Umgebung. B. Um eine Sprache zu lernen, genügt es nicht, diese Sprache zu hören; vielmehr benötigen wir eine Fülle an begleitender Information, wie hier Gestik und Mimik der Erwachsenen. Beides möchte man eigentlich für selbstverständlich halten. Herodot erzählt die berühmte Geschichte des Pharaos Psammetich, der wissen wollte, was die erste und eigentliche Sprache der Menschen sei, und befahl, zwei Neugeborene aufwachsen zu lassen, ohne dass jemand zu ihnen spricht; das erste Wort, das sie äußern, klang, so erzählt Herodot, wie das phrygische Wort für Brot, und so nahm man denn an, die Ursprache des Menschen sei das Phrygische. In dieser Vorstellung vom Spracherwerb spielt der Input aus der sozialen Umgebung nur insofern eine Rolle, als die eigentliche, von Geburt an vorhandene Sprache durch eine andere verdrängt werden kann: Kinder, die in einer englischsprachigen Umgebung aufwachsen, sprechen nicht die Ursprache. Diese Theorie gilt heute als obsolet. Sie ist aber in ihrer Einschätzung vom relativen Gewicht dessen, was an sprachlichem Wissen von Anfang an vorhanden ist, und dem, was der sozialen Umgebung entnommen werden muss, manchen neueren Theorien des Spracherwerbs nicht ganz fern: In der Chomsky’schen Idee der Universalgrammatik, theoretische Grundlage eines wesentlichen Teils der modernen Spracherwerbsforschung, ist „die Sprache” hauptsächlich etwas Angeborenes, insoweit gleich für alle Menschen und vom jeweiligen Input unabhängig. Das, was das Kind oder, beim Zweitspracherwerb, der erwachsene Lerner an Sprachlichem aus seiner Umgebung erfährt, wird nicht genutzt, um daraus bestimmte Regelhaftigkeiten abzuleiten und sich diese anzueignen; der Input fungiert eher als eine Art externer Auslöser für latent bereits vorhandenes Wissen. Für das Erlernen des Wortschatzes gilt dies sicher nicht. Es kann nicht angeboren sein, dass der Mond luna heißt. Für andere Bereiche der Sprache ist das Ausmaß des Angeborenen aber durchaus umstritten. Bei dieser Denkweise gilt das unter A Gesagte nicht. Die meisten modernen Spracherwerbsforscher schreiben dem Input ein wesentlich höheres Gewicht zu: Wir kopieren die charakteristischen Eigenschaften eines bestimmten sprachlichen Systems, indem wir den Input analysieren, um so die ihm zugrundeliegenden Regularitäten abzuleiten. Der Input tritt uns in Form von Schallfolgen (oder Gesten und später geschriebenen Zeichen) entgegen, die von anderen, die das System beherrschen, zu kommunikativen Zwecken verwendet werden. Diese Schallfolgen müssen die Lernenden in kleinere Einheiten zerlegen, diese mit Bedeutungen versehen und nach den Regularitäten abklopfen, denen gemäß sie sich zu komplexeren Ausdrücken verbinden lassen. Dies – und vieles andere – ist es, was das dem Menschen angeborene Sprachvermögen leistet, keine andere Spezies kann es (einem Pferd kann man so viel Chinesisch vorspielen, wie man will, es wird es nicht lernen). Aber auch wir könnten es nicht, wenn wir nur den Schall hätten. Wenn man, in einer Abwandlung des Psammetich’schen Versuchs, jemanden in ein Zimmer einsperren und tagaus tagein mit Chinesisch beschallen und im Übrigen gut versorgen würde, so würde er es, gleich ob als Kind oder als Erwachsener, nicht lernen. Vielleicht würde er einige strukturelle Eigenschaften des Schallstroms ausfindig machen; aber er würde auch nach Jahren kein Chinesisch können. Man benötigt den Schallstrom als sinnlich fassbaren Ausdruck der zugrundeliegenden Sprache, und man benötigt all die Informationen, die man der jeweiligen Redesituation oder aber seinem bereits vorhandenen anderweitigen Wissen entnehmen kann. Augustinus hat beides radikal vereinfacht; aber im Prinzip hat er Recht, und man sollte daher von der Spracherwerbsforschung erwarten, dass sie dies in Rechnung stellt. Das tut sie aber selten. Soweit sie überhaupt aus dem Gehäuse der Theorie tritt und sich den tatsächlichen Verlauf des Spracherwerbs anschaut, konzentriert sie sich weithin auf das, was die Kinder selbst sagen – dazu dienen ausgedehnte Corpora –, oder aber sie untersucht in experimentellen Settings, wie Kinder bestimmte Wörter oder Strukturen verstehen oder auch nicht verstehen. Das hat auch, wenn denn gut gemacht, einen hohen Aufschlusswert. Aber die eigentliche Verarbeitung des Inputs im doppelten Sinne – Schallwellen und Parallelinformation – wird selten in den Mittelpunkt des Interesses gerückt. Dies führt zu eigentümlichen Verzerrungen. So betrachtet man in der Spracherwerbsforschung vor allem deklarative Hauptsätze. Ein nicht unwesentlicher Teil dessen, was Kinder hören, besteht aber aus Imperativen („Tu das!“, „Tu das nicht!“). In solchen Imperativen gibt es normalerweise kein Subjekt. Ein intelligentes Kind muss daher zu dem Schluss kommen, dass das Deutsche in einem nicht unwesentlichen Teil seiner grammatischen Strukturen eine „pro drop-Sprache” ist, d.h. eine Sprache, in dem man das Subjekt weglassen kann. Kein Linguist käme auf diese Idee; sie entspricht aber den tatsächlichen Verhältnissen, und dies schlägt sich in dem Input, den das Kind verarbeiten muss, nieder. Dieses Heft befasst sich mit einer Spracherwerbssituation, in der – anders als beispielsweise bei einem Gespräch am Frühstückstisch – der Input in seiner doppelten Form gut zu überschauen ist, ohne dass die Situation, wie etwa bei einem kontrollierten Experiment, unnatürlich und der normalen Lernumgebung ferne wäre: mit dem Anschauen, Vorlesen und Lesen von Kinderbüchern. Man kann sich eine solche Situation als eine natürliche Ausweitung dessen vorstellen, was Augustinus beschreibt: Die Kinder hören, was die Erwachsenen sagen, und ihre Aufmerksamkeit wird auf bestimmte Dinge gerichtet, während sie hören und schauen – nur geht es hier nicht um einzelne Wörter, sondern um komplexe Ausdrücke und um komplexe, aber dennoch überschaubare begleitende Informationen. Nun haben Kinderbücher in der Spracherwerbsforschung durchaus eine Rolle gespielt. Dabei dienen sie – sei es als reine Folge von Bildern, sei es mit Text oder gar nur als Text – aber meistens nur als eine Art Vorlage für die Sprachproduktion der Kinder: Sie sollen aus der Vorlage eine Geschichte ableiten und in ihren eigenen Worten erzählen. Das bekannteste, aber keineswegs das einzige Beispiel sind die von Michael Bamberg, Ruth Berman und Dan Slobin in den 1980er Jahren initiierten „frog stories” – Nacherzählungen einer einfachen Bildgeschichte, die inzwischen in zahlreichen Sprachen vorliegen und viele Aufschlüsse über die unterschiedlichsten Aspekte der sich entwickelnden Sprachbeherrschung, von der Flexionsmorphologie bis zur Textstruktur, gebracht haben. Das ist gut und sinnvoll; aber im Grunde müsste man einen Schritt weiter gehen, nämlich gleichsam wir durch ein Mikroskop zu schauen, wie sich die Kinder ihre Regularitäten aus der Interaktion ableiten. Dies würde unsere Vorstellungen über den Verlauf des Spracherwerbs und die Gesetzlichkeiten, nach denen er erfolgt, wesentlich bereichern, vielleicht auf eine ganz neue Basis stellen. Die Beiträge dieses Heftes geben dafür eine Reihe von Beispielen, von denen nur ein kleines, aber besonders schlagendes erwähnt werden soll. Es gibt zahlreiche, auf Bildgeschichten beruhende Analysen, in denen untersucht wird, wie Kinder eine bestimmte Person oder eine Sache im fortlaufenden Diskurs benennen – ob sie etwa definite und indefinite Nominalausdrücke (ein Junge – der Junge), lexikalische oder pronominale Nominalphrasen (der Junge – er) oder gar leere Elemente (der Junge wacht auf und 0 schaut nach seinem Hund) richtig verwenden können. Das Bild, das die Forschung in diesem wesentlichen Teil der Sprachbeherrschung heute bietet, ist alles andere als einheitlich. So umfassen die Ansichten darüber, wann die Definit-Indefinit-Unterscheidung gemeistert wird, den größten Teil der Kindheit, je nachdem, welche Untersuchungen man zu Rate zieht. In dem Aufsatz von Katrin Dammann-Thedens wird deutlich, dass Kindern in einem bestimmen Alter oft überhaupt nicht klar ist, dass eine bestimmte Person, eine bestimmte Sache auf fortlaufenden Bildern dieselbe ist – auch wenn sie ähnlich aussieht –, und das ist bei Licht besehen ja auch keine triviale Frage. Diese Beobachtungen werfen ein ganz neues Licht auf die Idee der referentiellen Kontinuität im Diskurs und ihren Ausdruck durch nominale Ausdrücke wie die eben genannten. Vielleicht haben wir ganz falsche Vorstellungen darüber, wie Kinder die begleitende Information – hier durch die Bilder einer Geschichte geliefert – verstehen und damit für den Spracherwerb verarbeiten. Derlei Beobachtungen sind zunächst einmal etwas Punktuelles, keine Antworten, sondern Hinweise auf Dinge, die man bedenken muss. Aber ihre Analyse, und allgemeiner, ein genauerer Blick auf das, was sich tatsächlich abspielt, wenn Kinder sich Kinderbücher anschauen, mag uns vielleicht zu einem wesentlich tieferen Verständnis dessen führen, was beim Erwerb einer Sprache tatsächlich geschieht.
  • Klein, W. (1975). Einleitung. Zeitschrift für Literaturwissenschaft und Linguistik; Metzler, Stuttgart, 5(18), 7-8.
  • Klein, W. (1988). Einleitung. Zeitschrift für Literaturwissenschaft und Linguistik; Metzler, Stuttgart, 18(69), 7-8.
  • Klein, W. (2004). Auf der Suche nach den Prinzipien, oder: Warum die Geisteswissenschaften auf dem Rückzug sind. Zeitschrift für Literaturwissenschaft und Linguistik, 134, 19-44.
  • Klein, W. (2004). Im Lauf der Jahre. Linguistische Berichte, 200, 397-407.
  • Klein, W. (Ed.). (1975). Sprache ausländischer Arbeiter [Special Issue]. Zeitschrift für Literaturwissenschaft und Linguistik, (18).
  • Klein, W. (Ed.). (1988). Sprache Kranker [Special Issue]. Zeitschrift für Literaturwissenschaft und Linguistik, (69).
  • Klein, W. (1988). Sprache und Krankheit: Ein paar Anmerkungen. Zeitschrift für Literaturwissenschaft und Linguistik, 69, 9-20.
  • Klein, W., & Schlieben-Lange, B. (Eds.). (1996). Sprache und Subjektivität I [Special Issue]. Zeitschrift für Literaturwissenschaft und Linguistik, (101).
  • Klein, W., & Schlieben-Lange, B. (Eds.). (1996). Sprache und Subjektivität II [Special Issue]. Zeitschrift für Literaturwissenschaft und Linguistik, (102).
  • Klein, W., & Meibauer, J. (Eds.). (2011). Spracherwerb und Kinderliteratur [Special Issue]. Zeitschrift für Literaturwissenschaft und Linguistik, 162.
  • Klein, W. (2004). Was die Geisteswissenschaften leider noch von den Naturwissenschaften unterscheidet. Gegenworte, 13, 79-84.
  • Klein, W. (1975). Zur Sprache ausländischer Arbeiter: Syntaktische Analysen und Aspekte des kommunikativen Verhaltens. Zeitschrift für Literaturwissenschaft und Linguistik, 18, 78-121.
  • Klein, W. (Ed.). (1996). Zweitspracherwerb [Special Issue]. Zeitschrift für Literaturwissenschaft und Linguistik, (104).
  • Koenigs, M., Acheson, D. J., Barbey, A. K., Soloman, J., Postle, B. R., & Grafman, J. (2011). Areas of left perisylvian cortex mediate auditory-verbal short-term memory. Neuropsychologia, 49(13), 3612-3619. doi:10.1016/j.neuropsychologia.2011.09.013.

    Abstract

    A contentious issue in memory research is whether verbal short-term memory (STM) depends on a neural system specifically dedicated to the temporary maintenance of information, or instead relies on the same brain areas subserving the comprehension and production of language. In this study, we examined a large sample of adults with acquired brain lesions to identify the critical neural substrates underlying verbal STM and the relationship between verbal STM and language processing abilities. We found that patients with damage to selective regions of left perisylvian cortex – specifically the inferior frontal and posterior temporal sectors – were impaired on auditory–verbal STM performance (digit span), as well as on tests requiring the production and/or comprehension of language. These results support the conclusion that verbal STM and language processing are mediated by the same areas of left perisylvian cortex.

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  • Kokal, I., Engel, A., Kirschner, S., & Keysers, C. (2011). Synchronized drumming enhances activity in the caudate and facilitates prosocial commitment - If the rhythm comes easily. PLoS One, 6(11), e27272. doi:10.1371/journal.pone.0027272.

    Abstract

    Why does chanting, drumming or dancing together make people feel united? Here we investigate the neural mechanisms underlying interpersonal synchrony and its subsequent effects on prosocial behavior among synchronized individuals. We hypothesized that areas of the brain associated with the processing of reward would be active when individuals experience synchrony during drumming, and that these reward signals would increase prosocial behavior toward this synchronous drum partner. 18 female non-musicians were scanned with functional magnetic resonance imaging while they drummed a rhythm, in alternating blocks, with two different experimenters: one drumming in-synchrony and the other out-of-synchrony relative to the participant. In the last scanning part, which served as the experimental manipulation for the following prosocial behavioral test, one of the experimenters drummed with one half of the participants in-synchrony and with the other out-of-synchrony. After scanning, this experimenter "accidentally" dropped eight pencils, and the number of pencils collected by the participants was used as a measure of prosocial commitment. Results revealed that participants who mastered the novel rhythm easily before scanning showed increased activity in the caudate during synchronous drumming. The same area also responded to monetary reward in a localizer task with the same participants. The activity in the caudate during experiencing synchronous drumming also predicted the number of pencils the participants later collected to help the synchronous experimenter of the manipulation run. In addition, participants collected more pencils to help the experimenter when she had drummed in-synchrony than out-of-synchrony during the manipulation run. By showing an overlap in activated areas during synchronized drumming and monetary reward, our findings suggest that interpersonal synchrony is related to the brain's reward system.
  • Krott, A., Hagoort, P., & Baayen, R. H. (2004). Sublexical units and supralexical combinatories in the processing of interfixed Dutch compounds. Language and Cognitive Processes, 19(3), 453-471. doi:10.1080/769813936.

    Abstract

    This study addresses the supralexical inferential processes underlying wellformedness judgements and latencies for a specic sublexical unit that appears in Dutch compounds, the interfix. Production studies have shown that the selection of interfixes in novel Dutch compounds and the speed of
    this selection is primarily determined by the distribution of interfixes in existing compounds that share the left constituent with the target compound, i.e. the ‘‘left constituent family’’. In this paper, we consider the question whether constituent families also affect wellformedness decisions of novel as well as existing Dutch compounds in comprehension. We visually presented compounds containing interfixes that were either in line with the bias of the left constituent family or not. In the case of existing compounds, we also presented variants with replaced interfixes. As in production, the bias of the left constituent family emerged as a crucial predictor for both acceptance rates and response latencies. This result supports the hypothesis that, as in production, constituent families are (co-)activated in comprehension. We argue that this co-activation is part of a supralexical inferential process, and we discuss how our data might be interpreted within sublexical and supralexical theories of morphological processing.
  • Krott, A., Libben, G., Jarema, G., Dressler, W., Schreuder, R., & Baayen, R. H. (2004). Probability in the grammar of German and Dutch: Interfixation in triconstituent compounds. Language and Speech, 47(1), 83-106.

    Abstract

    This study addresses the possibility that interfixes in multiconstituent nominal compounds in German and Dutch are functional as markers of immediate constituent structure.We report a lexical statistical survey of interfixation in the lexicons of German and Dutch which shows that all interfixes of German and one interfix of Dutch are significantly more likely to appear at the major constituent boundary than expected under chance conditions. A series of experiments provides evidence that speakers of German and Dutch are sensitive to the probabilistic cues to constituent structure provided by the interfixes. Thus, our data provide evidence that probability is part and parcel of grammatical competence.
  • Kucera, K. S., Reddy, T. E., Pauli, F., Gertz, J., Logan, J. E., Myers, R. M., & Willard, H. F. (2011). Allele-specific distribution of RNA polymerase II on female X chromosomes. Human Molecular Genetics, 20, 3964-3973. doi:10.1093/hmg/ddr315.

    Abstract

    While the distribution of RNA polymerase II (PolII) in a variety of complex genomes is correlated with gene expression, the presence of PolII at a gene does not necessarily indicate active expression. Various patterns of PolII binding have been described genome wide; however, whether or not PolII binds at transcriptionally inactive sites remains uncertain. The two X chromosomes in female cells in mammals present an opportunity to examine each of the two alleles of a given locus in both active and inactive states, depending on which X chromosome is silenced by X chromosome inactivation. Here, we investigated PolII occupancy and expression of the associated genes across the active (Xa) and inactive (Xi) X chromosomes in human female cells to elucidate the relationship of gene expression and PolII binding. We find that, while PolII in the pseudoautosomal region occupies both chromosomes at similar levels, it is significantly biased toward the Xa throughout the rest of the chromosome. The general paucity of PolII on the Xi notwithstanding, detectable (albeit significantly reduced) binding can be observed, especially on the evolutionarily younger short arm of the X. PolII levels at genes that escape inactivation correlate with the levels of their expression; however, additional PolII sites can be found at apparently silenced regions, suggesting the possibility of a subset of genes on the Xi that are poised for expression. Consistent with this hypothesis, we show that a high proportion of genes associated with PolII-accessible sites, while silenced in GM12878, are expressed in other female cell lines.
  • Kuzla, C., & Ernestus, M. (2011). Prosodic conditioning of phonetic detail in German plosives. Journal of Phonetics, 39, 143-155. doi:10.1016/j.wocn.2011.01.001.

    Abstract

    This study investigates the prosodic conditioning of phonetic details which are candidate cues to phonological contrasts. German /b, d, g, p, t, k/ were examined in three prosodic positions. Lenis plosives /b, d, g/ were produced with less glottal vibration at larger prosodic boundaries, whereas their VOT showed no effect of prosody. VOT of fortis plosives /p, t, k/ decreased at larger boundaries, as did their burst intensity maximum. Vowels (when measured from consonantal release) following fortis plosives and lenis velars were shorter after larger boundaries. Closure duration, which did not contribute to the fortis/lenis contrast, was heavily affected by prosody. These results support neither of the hitherto proposed accounts of prosodic strengthening (Uniform Strengthening and Feature Enhancement). We propose a different account, stating that the phonological identity of speech sounds remains stable not only within, but also across prosodic positions (contrast-over-prosody hypothesis). Domain-initial strengthening hardly diminishes the contrast between prosodically weak fortis and strong lenis plosives.
  • Laaksonen, H., Kujala, J., Hultén, A., Liljeström, M., & Salmelin, R. (2011). MEG evoked responses and rhythmic activity provide spatiotemporally complementary measures of neural activity in language production. NeuroImage, 60, 29-36. doi:MEG evoked responses and rhythmic activity provide spatiotemporally complementary measures of neural activity in language production.

    Abstract

    Phase-locked evoked responses and event-related modulations of spontaneous rhythmic activity are the two main approaches used to quantify stimulus- or task-related changes in electrophysiological measures. The relationship between the two has beenwidely theorized upon but empirical research has been limited to the primary visual and sensorimotor cortex. However, both evoked responses and rhythms have been used as markers of neural activity in paradigms ranging from simple sensory to complex cognitive tasks.While some spatial agreement between the two phenomena has been observed, typically only one of the measures has been used in any given study, thus disallowing a direct evaluation of their exact spatiotemporal relationship. In this study, we sought to systematically clarify the connection between evoked responses and rhythmic activity. Using both measures, we identified the spatiotemporal patterns of task effects in three magnetoencephalography (MEG) data sets, all variants of a picture naming task. Evoked responses and rhythmic modulation yielded largely separate networks, with spatial overlap mainly in the sensorimotor and primary visual areas.Moreover, in the cortical regions thatwere identified with both measures the experimental effects they conveyed differed in terms of timing and function. Our results suggest that the two phenomena are largely detached and that both measures are needed for an accurate portrayal of brain activity.
  • Lacan, M., Keyser, C., Ricaut, F.-X., Brucato, N., Duranthon, F., Guilaine, J., Crubézy, E., & Ludes, B. (2011). Ancient DNA reveals male diffusion through the Neolithic Mediterranean route. Proceedings of the National Academy of Sciences of the United States of America, 108, 9788-9791. doi:10.1073/pnas.1100723108.

    Abstract

    The Neolithic is a key period in the history of the European settlement. Although archaeological and present-day genetic data suggest several hypotheses regarding the human migration patterns at this period, validation of these hypotheses with the use of ancient genetic data has been limited. In this context, we studied DNA extracted from 53 individuals buried in a necropolis used by a French local community 5,000 y ago. The relatively good DNA preservation of the samples allowed us to obtain autosomal, Y-chromosomal, and/or mtDNA data for 29 of the 53 samples studied. From these datasets, we established close parental relationships within the necropolis and determined maternal and paternal lineages as well as the absence of an allele associated with lactase persistence, probably carried by Neolithic cultures of central Europe. Our study provides an integrative view of the genetic past in southern France at the end of the Neolithic period. Furthermore, the Y-haplotype lineages characterized and the study of their current repartition in European populations confirm a greater influence of the Mediterranean than the Central European route in the peopling of southern Europe during the Neolithic transition.
  • Lacan, M., Keyser, C., Ricaut, F.-X., Brucato, N., Tarrús, J., Bosch, A., Guilaine, J., Crubézy, E., & Ludes, B. (2011). Ancient DNA suggests the leading role played by men in the Neolithic dissemination. Proceedings of the National Academy of Sciences of the United States of America, 108, 18255-18259. doi:10.1073/pnas.1113061108.

    Abstract

    The impact of the Neolithic dispersal on the western European populations is subject to continuing debate. To trace and date genetic lineages potentially brought during this transition and so understand the origin of the gene pool of current populations, we studied DNA extracted from human remains excavated in a Spanish funeral cave dating from the beginning of the fifth millennium B.C. Thanks to a “multimarkers” approach based on the analysis of mitochondrial and nuclear DNA (autosomes and Y-chromosome), we obtained information on the early Neolithic funeral practices and on the biogeographical origin of the inhumed individuals. No close kinship was detected. Maternal haplogroups found are consistent with pre-Neolithic settlement, whereas the Y-chromosomal analyses permitted confirmation of the existence in Spain approximately 7,000 y ago of two haplogroups previously associated with the Neolithic transition: G2a and E1b1b1a1b. These results are highly consistent with those previously found in Neolithic individuals from French Late Neolithic individuals, indicating a surprising temporal genetic homogeneity in these groups. The high frequency of G2a in Neolithic samples in western Europe could suggest, furthermore, that the role of men during Neolithic dispersal could be greater than currently estimated.

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  • Lai, J., & Poletiek, F. H. (2011). The impact of adjacent-dependencies and staged-input on the learnability of center-embedded hierarchical structures. Cognition, 118(2), 265-273. doi:10.1016/j.cognition.2010.11.011.

    Abstract

    A theoretical debate in artificial grammar learning (AGL) regards the learnability of hierarchical structures. Recent studies using an AnBn grammar draw conflicting conclusions (Bahlmann and Friederici, 2006, De Vries et al., 2008). We argue that 2 conditions crucially affect learning AnBn structures: sufficient exposure to zero-level-of-embedding (0-LoE) exemplars and a staged-input. In 2 AGL experiments, learning was observed only when the training set was staged and contained 0-LoE exemplars. Our results might help understanding how natural complex structures are learned from exemplars.
  • De Lange, F. P., Kalkman, J. S., Bleijenberg, G., Hagoort, P., Van der Werf, S. P., Van der Meer, J. W. M., & Toni, I. (2004). Neural correlates of the chronic fatigue syndrom: An fMRI study. Brain, 127(9), 1948-1957. doi:10.1093/brain/awh225.

    Abstract

    Chronic fatigue syndrome (CFS) is characterized by a debilitating fatigue of unknown aetiology. Patients who suffer from CFS report a variety of physical complaints as well as neuropsychological complaints. Therefore, it is conceivable that the CNS plays a role in the pathophysiology of CFS. The purpose of this study was to investigate neural correlates of CFS, and specifically whether there exists a linkage between disturbances in the motor system and CFS. We measured behavioural performance and cerebral activity using rapid event-related functional MRI in 16 CFS patients and 16 matched healthy controls while they were engaged in a motor imagery task and a control visual imagery task. CFS patients were considerably slower on performance of both tasks, but the increase in reaction time with increasing task load was similar between the groups. Both groups used largely overlapping neural resources. However, during the motor imagery task, CFS patients evoked stronger responses in visually related structures. Furthermore, there was a marked between-groups difference during erroneous performance. In both groups, dorsal anterior cingulate cortex was specifically activated during error trials. Conversely, ventral anterior cingulate cortex was active when healthy controls made an error, but remained inactive when CFS patients made an error. Our results support the notion that CFS may be associated with dysfunctional motor planning. Furthermore, the between-groups differences observed during erroneous performance point to motivational disturbances as a crucial component of CFS.
  • Leckband, D. E., Menon, S., Rosenberg, K., Graham, S. A., Taylor, M. E., & Drickamer, K. (2011). Geometry and adhesion of extracellular domains of DC-SIGNR neck length variants analyzed by force-distance measurements. Biochemistry, 50, 6125-6132. doi:10.1021/bi2003444.

    Abstract

    Force-distance measurements have been used to examine differences in the interaction of the dendritic cell glycan-binding receptor DC-SIGN and the closely related endothelial cell receptor DC-SIGNR (L-SIGN) with membranes bearing glycan ligands. The results demonstrate that upon binding to membrane-anchored ligand, DC-SIGNR undergoes a conformational change similar to that previously observed for DC-SIGN. The results also validate a model for the extracellular domain of DC-SIGNR derived from crystallographic studies. Force measurements were performed with DC-SIGNR variants that differ in the length of the neck that result from genetic polymorphisms, which encode different numbers of the 23-amino acid repeat sequences that constitute the neck. The findings are consistent with an elongated, relatively rigid structure of the neck repeat observed in crystals. In addition, differences in the lengths of DC-SIGN and DC-SIGNR extracellular domains with equivalent numbers of neck repeats support a model in which the different dispositions of the carbohydrate-recognition domains in DC-SIGN and DC-SIGNR result from variations in the sequences of the necks.
  • Levelt, W. J. M., Meyer, A. S., & Roelofs, A. (2004). Relations of lexical access to neural implementation and syntactic encoding [author's response]. Behavioral and Brain Sciences, 27, 299-301. doi:10.1017/S0140525X04270078.

    Abstract

    How can one conceive of the neuronal implementation of the processing model we proposed in our target article? In his commentary (Pulvermüller 1999, reprinted here in this issue), Pulvermüller makes various proposals concerning the underlying neural mechanisms and their potential localizations in the brain. These proposals demonstrate the compatibility of our processing model and current neuroscience. We add further evidence on details of localization based on a recent meta-analysis of neuroimaging studies of word production (Indefrey & Levelt 2000). We also express some minor disagreements with respect to Pulvermüller’s interpretation of the “lemma” notion, and concerning his neural modeling of phonological code retrieval. Branigan & Pickering discuss important aspects of syntactic encoding, which was not the topic of the target article. We discuss their well-taken proposal that multiple syntactic frames for a single verb lemma are represented as independent nodes, which can be shared with other verbs, such as accounting for syntactic priming in speech production. We also discuss how, in principle, the alternative multiple-frame-multiplelemma account can be tested empirically. The available evidence does not seem to support that account.
  • Levelt, W. J. M. (2004). Speech, gesture and the origins of language. European Review, 12(4), 543-549. doi:10.1017/S1062798704000468.

    Abstract

    During the second half of the 19th century, the psychology of language was invented as a discipline for the sole purpose of explaining the evolution of spoken language. These efforts culminated in Wilhelm Wundt’s monumental Die Sprache of 1900, which outlined the psychological mechanisms involved in producing utterances and considered how these mechanisms could have evolved. Wundt assumes that articulatory movements were originally rather arbitrary concomitants of larger, meaningful expressive bodily gestures. The sounds such articulations happened to produce slowly acquired the meaning of the gesture as a whole, ultimately making the gesture superfluous. Over a century later, gestural theories of language origins still abound. I argue that such theories are unlikely and wasteful, given the biological, neurological and genetic evidence.
  • Levelt, W. J. M. (2004). Een huis voor kunst en wetenschap. Boekman: Tijdschrift voor Kunst, Cultuur en Beleid, 16(58/59), 212-215.
  • Levelt, W. J. M. (1996). Hoedt u voor neurolinguïstisch programmeren. Actieblad tegen de kwakzalverij, 107, 12-14.
  • Levelt, W. J. M. (1988). Onder sociale wetenschappen. Mededelingen van de Afdeling Letterkunde, 51(2), 41-55.
  • Levelt, W. J. M. (1996). Waar komen gesproken woorden vandaan? De Psycholoog, 31, 434-437.
  • Levinson, S. C. (1996). Language and space. Annual Review of Anthropology, 25, 353-382. doi:10.1146/annurev.anthro.25.1.353.

    Abstract

    This review describes some recent, unexpected findings concerning variation in spatial language across cultures, and places them in the context of the general anthropology of space on the one hand, and theories of spatial cognition in the cognitive sciences on the other. There has been much concern with the symbolism of space in anthropological writings, but little on concepts of space in practical activities. This neglect of everyday spatial notions may be due to unwitting ethnocentrism, the assumption in Western thinking generally that notions of space are universally of a single kind. Recent work shows that systems of spatial reckoning and description can in fact be quite divergent across cultures, linguistic differences correlating with distinct cognitive tendencies. This unexpected cultural variation raises interesting questions concerning the relation between cultural and linguistic concepts and the biological foundations of cognition. It argues for more sophisticated models relating culture and cognition than we currently have available.
  • Levinson, S. C. (2011). Pojmowanie przestrzeni w różnych kulturach [Polish translation of Levinson, S. C. 1998. Studying spatial conceptualization across cultures]. Autoportret, 33, 16-23.

    Abstract

    Polish translation of Levinson, S. C. (1998). Studying spatial conceptualization across cultures: Anthropology and cognitive science. Ethos, 26(1), 7-24. doi:10.1525/eth.1998.26.1.7
  • Levinson, S. C., Greenhill, S. J., Gray, R. D., & Dunn, M. (2011). Universal typological dependencies should be detectable in the history of language families. Linguistic Typology, 15, 509-534. doi:10.1515/LITY.2011.034.

    Abstract

    1. Introduction We claim that making sense of the typological diversity of languages demands a historical/evolutionary approach.We are pleased that the target paper (Dunn et al. 2011a) has served to bring discussion of this claim into prominence, and are grateful that leading typologists have taken the time to respond (commentaries denoted by boldface). It is unfortunate though that a number of the commentaries in this issue of LT show significant misunderstandings of our paper. Donohue thinks we were out to show the stability of typological features, but that was not our target at all (although related methods can be used to do that: see, e.g., Greenhill et al. 2010a, Dediu 2011a). Plank seems to think we were arguing against universals of any type, but our target was in fact just the implicational universals of word order that have been the bread and butter of typology. He also seems to think we ignore diachrony, whereas in fact the method introduces diachrony centrally into typological reasoning, thereby potentially revolutionising typology (see Cysouw’s commentary). Levy & Daumé think we were testing for lineage-specificity, whereas that was in fact an outcome (the main finding) of our testing for correlated evolution. Dryer thinks we must account for the distribution of language types around the world, but that was not our aim: our aim was to test the causal connection between linguistic variables by taking the perspective of language evolution (diversification and change). Longobardi & Roberts seem to think we set out to extract family trees from syntactic features, but our goal was in fact to use trees based on lexical cognates and hang reconstructed syntactic states on each node of these trees, thereby reconstructing the processes of language change.
  • Lindell, A. K., & Kidd, E. (2011). Why right-brain teaching is half-witted: A critique of the misapplication of neuroscience to education. Mind, Brain and Education, 5(3), 121-127. doi:10.1111/j.1751-228X.2011.01120.x.

    Abstract

    Educational tools claiming to use “right-brain techniques” are increasingly shaping school curricula. By implying a strong scientific basis, such approaches appeal to educators who rightly believe that knowledge of the brain should guide curriculum development. However, the notion of hemisphericity (idea that people are “left-brained” or “right-brained”) is a neuromyth that was debunked in the scientific literature 25 years ago. This article challenges the validity of “right-brain” teaching, highlighting the fact that neuroscientific research does not support its claims. Providing teachers with a basic understanding of neuroscience research as part of teacher training would enable more effective evaluation of brain-based claims and facilitate the adoption of tools validated by rigorous independent research rather than programs based on pseudoscience.
  • Liszkowski, U., & Tomasello, M. (2011). Individual differences in social, cognitive, and morphological aspects of infant pointing. Cognitive Development, 26, 16-29. doi:10.1016/j.cogdev.2010.10.001.

    Abstract

    Little is known about the origins of the pointing gesture. We sought to gain insight into its emergence by investigating individual differences in the pointing of 12-month-old infants in two ways. First, we looked at differences in the communicative and interactional uses of pointing and asked how different hand shapes relate to point frequency, accompanying vocalizations, and mothers’ pointing. Second, we looked at differences in social-cognitive skills of point comprehension and imitation and tested whether these were related to infants’ own pointing. Infants’ and mothers’ spontaneous pointing correlated with one another, as did infants’ point production and comprehension. In particular, infants’ index-finger pointing had a profile different from simple whole-hand pointing. It was more frequent, it was more often accompanied by vocalizations, and it correlated more strongly with comprehension of pointing (especially to occluded referents). We conclude that whole-hand and index-finger pointing differ qualitatively and suggest that it is index-finger pointing that first embodies infants’ understanding of communicative intentions.
  • Liszkowski, U. (2011). Three lines in the emergence of prelinguistic communication and social cognition. Journal of cognitive education and psychology, 10(1), 32-43. doi:10.1891/1945-8959.10.1.32.

    Abstract

    Sociocultural theories of development posit that higher cognitive functions emerge through socially mediated processes, in particular through language. However, theories of human communication posit that language itself is based on higher social cognitive skills and cooperative motivations. Prelinguistic communication is a test case to this puzzle. In the current review, I first present recent and new findings of a research program on prelinguistic infants’ ommunication skills. This research provides empirical evidence for a rich social cognitive and motivational basis of human communication before language. Next, I discuss the emergence of these foundational skills. By considering all three lines of development, and by drawing on new findings from phylogenetic and cross-cultural comparisons, this article discusses the possibility that the cognitive foundations of prelinguistic communication are, in turn, mediated by social interactional input and shared experiences.
  • Liszkowski, U., Carpenter, M., Henning, A., Striano, T., & Tomasello, M. (2004). Twelve-month-olds point to share attention and interest. Developmental Science, 7(3), 297-307. doi:10.1111/j.1467-7687.2004.00349.x.

    Abstract

    Infants point for various motives. Classically, one such motive is declarative, to share attention and interest with adults to events. Recently, some researchers have questioned whether infants have this motivation. In the current study, an adult reacted to 12-month-olds' pointing in different ways, and infants' responses were observed. Results showed that when the adult shared attention and interest (i.e. alternated gaze and emoted), infants pointed more frequently across trials and tended to prolong each point – presumably to prolong the satisfying interaction. However, when the adult emoted to the infant alone or looked only to the event, infants pointed less across trials and repeated points more within trials – presumably in an attempt to establish joint attention. Results suggest that 12-month-olds point declaratively and understand that others have psychological states that can be directed and shared.
  • Lloyd, S. E., Pearce, S. H. S., Fisher, S. E., Steinmeyer, K., Schwappach, B., Scheinman, S. J., Harding, B., Bolino, A., Devoto, M., Goodyer, P., Rigden, S. P. A., Wrong, O., Jentsch, T. J., Craig, I. W., & Thakker, R. V. (1996). A common molecular basis for three inherited kidney stone diseases [Letter to Nature]. Nature, 379, 445 -449. doi:10.1038/379445a0.

    Abstract

    Kidney stones (nephrolithiasis), which affect 12% of males and 5% of females in the western world, are familial in 45% of patients and are most commonly associated with hypercalciuria. Three disorders of hypercalciuric nephrolithiasis (Dent's disease, X-linked recessive nephrolithiasis (XRN), and X-linked recessive hypophosphataemic rickets (XLRH)) have been mapped to Xp11.22 (refs 5-7). A microdeletion in one Dent's disease kindred allowed the identification of a candidate gene, CLCN5 (refs 8,9) which encodes a putative renal chloride channel. Here we report the investigation of 11 kindreds with these renal tubular disorders for CLCN5 abnormalities; this identified three nonsense, four missense and two donor splice site mutations, together with one intragenic deletion and one microdeletion encompassing the entire gene. Heterologous expression of wild-type CLCN5 in Xenopus oocytes yielded outwardly rectifying chloride currents, which were either abolished or markedly reduced by the mutations. The common aetiology for Dent's disease, XRN and XLRH indicates that CLCN5 may be involved in other renal tubular disorders associated with kidney stones
  • Loo, S. K., Fisher, S. E., Francks, C., Ogdie, M. N., MacPhie, I. L., Yang, M., McCracken, J. T., McGough, J. J., Nelson, S. F., Monaco, A. P., & Smalley, S. L. (2004). Genome-wide scan of reading ability in affected sibling pairs with attention-deficit/hyperactivity disorder: Unique and shared genetic effects. Molecular Psychiatry, 9, 485-493. doi:10.1038/sj.mp.4001450.

    Abstract

    Attention-deficit/hyperactivity disorder (ADHD) and reading disability (RD) are common highly heritable disorders of childhood, which frequently co-occur. Data from twin and family studies suggest that this overlap is, in part, due to shared genetic underpinnings. Here, we report the first genome-wide linkage analysis of measures of reading ability in children with ADHD, using a sample of 233 affected sibling pairs who previously participated in a genome-wide scan for susceptibility loci in ADHD. Quantitative trait locus (QTL) analysis of a composite reading factor defined from three highly correlated reading measures identified suggestive linkage (multipoint maximum lod score, MLS>2.2) in four chromosomal regions. Two regions (16p, 17q) overlap those implicated by our previous genome-wide scan for ADHD in the same sample: one region (2p) provides replication for an RD susceptibility locus, and one region (10q) falls approximately 35 cM from a modestly highlighted region in an independent genome-wide scan of siblings with ADHD. Investigation of an individual reading measure of Reading Recognition supported linkage to putative RD susceptibility regions on chromosome 8p (MLS=2.4) and 15q (MLS=1.38). Thus, the data support the existence of genetic factors that have pleiotropic effects on ADHD and reading ability--as suggested by shared linkages on 16p, 17q and possibly 10q--but also those that appear to be unique to reading--as indicated by linkages on 2p, 8p and 15q that coincide with those previously found in studies of RD. Our study also suggests that reading measures may represent useful phenotypes in ADHD research. The eventual identification of genes underlying these unique and shared linkages may increase our understanding of ADHD, RD and the relationship between the two.
  • Mace, R., & Jordan, F. (2011). Macro-evolutionary studies of cultural diversity: A review of empirical studies of cultural transmission and cultural adaptation. Philosophical Transactions of the Royal Society of London B, Biological Sciences, 366, 402-411. doi:10.1098/rstb.2010.0238.

    Abstract

    A growing body of theoretical and empirical research has examined cultural transmission and adaptive cultural behaviour at the individual, within-group level. However, relatively few studies have tried to examine proximate transmission or test ultimate adaptive hypotheses about behavioural or cultural diversity at a between-societies macro-level. In both the history of anthropology and in present-day work, a common approach to examining adaptive behaviour at the macro-level has been through correlating various cultural traits with features of ecology. We discuss some difficulties with simple ecological associations, and then review cultural phylogenetic studies that have attempted to go beyond correlations to understand the underlying cultural evolutionary processes. We conclude with an example of a phylogenetically controlled approach to understanding proximate transmission pathways in Austronesian cultural diversity.
  • Magyari, L. (2004). Nyelv és/vagy evolúció? [Book review]. Magyar Pszichológiai Szemle, 59(4), 591-607. doi:10.1556/MPSzle.59.2004.4.7.

    Abstract

    Nyelv és/vagy evolúció: Lehetséges-e a nyelv evolúciós magyarázata? [Derek Bickerton: Nyelv és evolúció] (Magyari Lilla); Történelmi olvasókönyv az agyról [Charles G. Gross: Agy, látás, emlékezet. Mesék az idegtudomány történetéből] (Garab Edit Anna); Művészet vagy tudomány [Margitay Tihamér: Az érvelés mestersége. Érvelések elemzése, értékelése és kritikája] (Zemplén Gábor); Tényleg ésszerűek vagyunk? [Herbert Simon: Az ésszerűség szerepe az emberi életben] (Kardos Péter); Nemi különbségek a megismerésben [Doreen Kimura: Női agy, férfi agy]. (Hahn Noémi);
  • Majid, A. (2004). Out of context. The Psychologist, 17(6), 330-330.
  • Majid, A. (2004). Data elicitation methods. Language Archive Newsletter, 1(2), 6-6.
  • Majid, A. (2004). Developing clinical understanding. The Psychologist, 17, 386-387.
  • Majid, A. (2004). Coned to perfection. The Psychologist, 17(7), 386-386.
  • Majid, A., Bowerman, M., Kita, S., Haun, D. B. M., & Levinson, S. C. (2004). Can language restructure cognition? The case for space. Trends in Cognitive Sciences, 8(3), 108-114. doi:10.1016/j.tics.2004.01.003.

    Abstract

    Frames of reference are coordinate systems used to compute and specify the location of objects with respect to other objects. These have long been thought of as innate concepts, built into our neurocognition. However, recent work shows that the use of such frames in language, cognition and gesture varies crossculturally, and that children can acquire different systems with comparable ease. We argue that language can play a significant role in structuring, or restructuring, a domain as fundamental as spatial cognition. This suggests we need to rethink the relation between the neurocognitive underpinnings of spatial cognition and the concepts we use in everyday thinking, and, more generally, to work out how to account for cross-cultural cognitive diversity in core cognitive domains.
  • Majid, A. (2004). An integrated view of cognition [Review of the book Rethinking implicit memory ed. by J. S. Bowers and C. J. Marsolek]. The Psychologist, 17(3), 148-149.
  • Majid, A. (2004). [Review of the book The new handbook of language and social psychology ed. by W. Peter Robinson and Howard Giles]. Language and Society, 33(3), 429-433.
  • Majid, A., & Levinson, S. C. (Eds.). (2011). The senses in language and culture [Special Issue]. The Senses & Society, 6(1).
  • Majid, A., & Levinson, S. C. (2011). The senses in language and culture. The Senses & Society, 6(1), 5-18. doi:10.2752/174589311X12893982233551.

    Abstract

    Multiple social science disciplines have converged on the senses in recent years, where formerly the domain of perception was the preserve of psychology. Linguistics, or Language, however, seems to have an ambivalent role in this undertaking. On the one hand, Language with a capital L (language as a general human capacity) is part of the problem. It was the prior focus on language (text) that led to the disregard of the senses. On the other hand, it is language (with a small "l", a particular tongue) that offers key insights into how other peoples onceptualize the senses. In this article, we argue that a systematic cross-cultural approach can reveal fundamental truths about the precise connections between language and the senses. Recurring failures to adequately describe the sensorium across specific languages reveal the intrinsic limits of Language. But the converse does not hold. Failures of expressibility in one language need not hold any implications for the Language faculty per se, and indeed can enlighten us about the possible experiential worlds available to human experience.
  • Majid, A., Evans, N., Gaby, A., & Levinson, S. C. (2011). The grammar of exchange: A comparative study of reciprocal constructions across languages. Frontiers in Psychology, 2: 34, pp. 34. doi:10.3389/fpsyg.2011.00034.

    Abstract

    Cultures are built on social exchange. Most languages have dedicated grammatical machinery for expressing this. To demonstrate that statistical methods can also be applied to grammatical meaning, we here ask whether the underlying meanings of these grammatical constructions are based on shared common concepts. To explore this, we designed video stimuli of reciprocated actions (e.g. ‘giving to each other’) and symmetrical states (e.g. ‘sitting next to each other’), and with the help of a team of linguists collected responses from 20 languages around the world. Statistical analyses revealed that many languages do, in fact, share a common conceptual core for reciprocal meanings but that this is not a universally expressed concept. The recurrent pattern of conceptual packaging found across languages is compatible with the view that there is a shared non-linguistic understanding of reciprocation. But, nevertheless, there are considerable differences between languages in the exact extensional patterns, highlighting that even in the domain of grammar semantics is highly language-specific.
  • Mangione-Smith, R., Elliott, M. N., Stivers, T., McDonald, L., Heritage, J., & McGlynn, E. A. (2004). Racial/ethnic variation in parent expectations for antibiotics: Implications for public health campaigns. Pediatrics, 113(5), 385-394.
  • Martin, A. E., & McElree, B. (2011). Direct-access retrieval during sentence comprehension: Evidence from Sluicing. Journal of Memory and Language, 64(4), 327-343. doi:10.1016/j.jml.2010.12.006.

    Abstract

    Language comprehension requires recovering meaning from linguistic form, even when the mapping between the two is indirect. A canonical example is ellipsis, the omission of information that is subsequently understood without being overtly pronounced. Comprehension of ellipsis requires retrieval of an antecedent from memory, without prior prediction, a property which enables the study of retrieval in situ ( Martin and McElree, 2008 and Martin and McElree, 2009). Sluicing, or inflectional-phrase ellipsis, in the presence of a conjunction, presents a test case where a competing antecedent position is syntactically licensed, in contrast with most cases of nonadjacent dependency, including verb–phrase ellipsis. We present speed–accuracy tradeoff and eye-movement data inconsistent with the hypothesis that retrieval is accomplished via a syntactically guided search, a particular variant of search not examined in past research. The observed timecourse profiles are consistent with the hypothesis that antecedents are retrieved via a cue-dependent direct-access mechanism susceptible to general memory variables.
  • Matthews, L. J., Tehrani, J. J., Jordan, F., Collard, M., & Nunn, C. (2011). Testing for divergent transmission histories among cultural characters: A study using Bayesian phylogenetic methods and Iranian tribal textile data. Plos One, 6(4), e14810. doi:10.1371/journal.pone.0014810.

    Abstract

    Abstract Background: Archaeologists and anthropologists have long recognized that different cultural complexes may have distinct descent histories, but they have lacked analytical techniques capable of easily identifying such incongruence. Here, we show how Bayesian phylogenetic analysis can be used to identify incongruent cultural histories. We employ the approach to investigate Iranian tribal textile traditions. Methods: We used Bayes factor comparisons in a phylogenetic framework to test two models of cultural evolution: the hierarchically integrated system hypothesis and the multiple coherent units hypothesis. In the hierarchically integrated system hypothesis, a core tradition of characters evolves through descent with modification and characters peripheral to the core are exchanged among contemporaneous populations. In the multiple coherent units hypothesis, a core tradition does not exist. Rather, there are several cultural units consisting of sets of characters that have different histories of descent. Results: For the Iranian textiles, the Bayesian phylogenetic analyses supported the multiple coherent units hypothesis over the hierarchically integrated system hypothesis. Our analyses suggest that pile-weave designs represent a distinct cultural unit that has a different phylogenetic history compared to other textile characters. Conclusions: The results from the Iranian textiles are consistent with the available ethnographic evidence, which suggests that the commercial rug market has influenced pile-rug designs but not the techniques or designs incorporated in the other textiles produced by the tribes. We anticipate that Bayesian phylogenetic tests for inferring cultural units will be of great value for researchers interested in studying the evolution of cultural traits including language, behavior, and material culture.
  • McGettigan, C., Warren, J. E., Eisner, F., Marshall, C. R., Shanmugalingam, P., & Scott, S. K. (2011). Neural correlates of sublexical processing in phonological working memory. Journal of Cognitive Neuroscience, 23, 961-977. doi:10.1162/jocn.2010.21491.

    Abstract

    This study investigated links between working memory and speech processing systems. We used delayed pseudoword repetition in fMRI to investigate the neural correlates of sublexical structure in phonological working memory (pWM). We orthogonally varied the number of syllables and consonant clusters in auditory pseudowords and measured the neural responses to these manipulations under conditions of covert rehearsal (Experiment 1). A left-dominant network of temporal and motor cortex showed increased activity for longer items, with motor cortex only showing greater activity concomitant with adding consonant clusters. An individual-differences analysis revealed a significant positive relationship between activity in the angular gyrus and the hippocampus, and accuracy on pseudoword repetition. As models of pWM stipulate that its neural correlates should be activated during both perception and production/rehearsal [Buchsbaum, B. R., & D'Esposito, M. The search for the phonological store: From loop to convolution. Journal of Cognitive Neuroscience, 20, 762-778, 2008; Jacquemot, C., & Scott, S. K. What is the relationship between phonological short-term memory and speech processing? Trends in Cognitive Sciences, 10, 480-486, 2006; Baddeley, A. D., & Hitch, G. Working memory. In G. H. Bower (Ed.), The psychology of learning and motivation: Advances in research and theory (Vol. 8, pp. 47-89). New York: Academic Press, 1974], we further assessed the effects of the two factors in a separate passive listening experiment (Experiment 2). In this experiment, the effect of the number of syllables was concentrated in posterior-medial regions of the supratemporal plane bilaterally, although there was no evidence of a significant response to added clusters. Taken together, the results identify the planum temporale as a key region in pWM; within this region, representations are likely to take the form of auditory or audiomotor -templates- or -chunks- at the level of the syllable [Papoutsi, M., de Zwart, J. A., Jansma, J. M., Pickering, M. J., Bednar, J. A., & Horwitz, B. From phonemes to articulatory codes: an fMRI study of the role of Broca's area in speech production. Cerebral Cortex, 19, 2156-2165, 2009; Warren, J. E., Wise, R. J. S., & Warren, J. D. Sounds do-able: auditory-motor transformations and the posterior temporal plane. Trends in Neurosciences, 28, 636-643, 2005; Griffiths, T. D., & Warren, J. D. The planum temporale as a computational hub. Trends in Neurosciences, 25, 348-353, 2002], whereas more lateral structures on the STG may deal with phonetic analysis of the auditory input [Hickok, G. The functional neuroanatomy of language. Physics of Life Reviews, 6, 121-143, 2009].
  • Meeuwissen, M., Roelofs, A., & Levelt, W. J. M. (2004). Naming analog clocks conceptually facilitates naming digital clocks. Brain and Language, 90(1-3), 434-440. doi:10.1016/S0093-934X(03)00454-1.

    Abstract

    This study investigates how speakers of Dutch compute and produce relative time expressions. Naming digital clocks (e.g., 2:45, say ‘‘quarter to three’’) requires conceptual operations on the minute and hour information for the correct relative time expression. The interplay of these conceptual operations was investigated using a repetition priming paradigm. Participants named analog clocks (the primes) directly before naming digital clocks (the targets). The targets referred to the hour (e.g., 2:00), half past the hour (e.g., 2:30), or the coming hour (e.g., 2:45). The primes differed from the target in one or two hour and in five or ten minutes. Digital clock naming latencies were shorter with a five- than with a ten-min difference between prime and target, but the difference in hour had no effect. Moreover, the distance in minutes had only an effect for half past the hour and the coming hour, but not for the hour. These findings suggest that conceptual facilitation occurs when conceptual transformations are shared between prime and target in telling time.
  • Mehta, G., & Cutler, A. (1988). Detection of target phonemes in spontaneous and read speech. Language and Speech, 31, 135-156.

    Abstract

    Although spontaneous speech occurs more frequently in most listeners’ experience than read speech, laboratory studies of human speech recognition typically use carefully controlled materials read from a script. The phonological and prosodic characteristics of spontaneous and read speech differ considerably, however, which suggests that laboratory results may not generalize to the recognition of spontaneous and read speech materials, and their response time to detect word-initial target phonemes was measured. Response were, overall, equally fast in each speech mode. However analysis of effects previously reported in phoneme detection studies revealed significant differences between speech modes. In read speech but not in spontaneous speech, later targets were detected more rapidly than earlier targets, and targets preceded by long words were detected more rapidly than targets preceded by short words. In contrast, in spontaneous speech but not in read speech, targets were detected more rapidly in accented than unaccented words and in strong than in weak syllables. An explanation for this pattern is offered in terms of characteristic prosodic differences between spontaneous and read speech. The results support claim from previous work that listeners pay great attention to prosodic information in the process of recognizing speech.
  • Melinger, A., & Levelt, W. J. M. (2004). Gesture and the communicative intention of the speaker. Gesture, 4(2), 119-141.

    Abstract

    This paper aims to determine whether iconic tracing gestures produced while speaking constitute part of the speaker’s communicative intention. We used a picture description task in which speakers must communicate the spatial and color information of each picture to an interlocutor. By establishing the necessary minimal content of an intended message, we determined whether speech produced with concurrent gestures is less explicit than speech without gestures. We argue that a gesture must be communicatively intended if it expresses necessary information that was nevertheless omitted from speech. We found that speakers who produced iconic gestures representing spatial relations omitted more required spatial information from their descriptions than speakers who did not gesture. These results provide evidence that speakers intend these gestures to communicate. The results have implications for the cognitive architectures that underlie the production of gesture and speech.
  • Menenti, L., Gierhan, S., Segaert, K., & Hagoort, P. (2011). Shared language: Overlap and segregation of the neuronal infrastructure for speaking and listening revealed by functional MRI. Psychological Science, 22, 1173-1182. doi:10.1177/0956797611418347.

    Abstract

    Whether the brain’s speech-production system is also involved in speech comprehension is a topic of much debate. Research has focused on whether motor areas are involved in listening, but overlap between speaking and listening might occur not only at primary sensory and motor levels, but also at linguistic levels (where semantic, lexical, and syntactic processes occur). Using functional MRI adaptation during speech comprehension and production, we found that the brain areas involved in semantic, lexical, and syntactic processing are mostly the same for speaking and for listening. Effects of primary processing load (indicative of sensory and motor processes) overlapped in auditory cortex and left inferior frontal cortex, but not in motor cortex, where processing load affected activity only in speaking. These results indicate that the linguistic parts of the language system are used for both speaking and listening, but that the motor system does not seem to provide a crucial contribution to listening.
  • Mester, J. L., Tilot, A. K., Rybicki, L. A., Frazier, T. W., & Eng, C. (2011). Analysis of prevalence and degree of macrocephaly in patients with germline PTEN mutations and of brain weight in Pten knock-in murine model. European Journal of Human Genetics, 19(7), 763-768. doi:10.1038/ejhg.2011.20.

    Abstract

    PTEN Hamartoma Tumour Syndrome (PHTS) includes Cowden syndrome (CS), Bannayan-Riley-Ruvalcaba syndrome (BRRS), and other conditions resulting from germline mutation of the PTEN tumour suppressor gene. Although macrocephaly, presumably due to megencephaly, is found in both CS and BRRS, the prevalence and degree have not been formally assessed in PHTS. We evaluated head size in a prospective nested series of 181 patients found to have pathogenic germline PTEN mutations. Clinical data including occipital-frontal circumference (OFC) measurement were requested for all participants. Macrocephaly was present in 94% of 161 evaluable PHTS individuals. In patients ≤18 years, mean OFC was +4.89 standard deviations (SD) above the population mean with no difference between genders (P=0.7). Among patients >18 years, average OFC was 60.0 cm in females and 62.8 cm in males (P<0.0001). To systematically determine whether macrocephaly was due to megencephaly, we examined PtenM3M4 missense mutant mice generated and maintained on mixed backgrounds. Mice were killed at various ages, brains were dissected out and weighed. Average brain weight for PtenM3M4 homozygous mice (N=15) was 1.02 g compared with 0.57 g for heterozygous mice (N=29) and 0.49 g for wild-type littermates (N=24) (P<0.0001). Macrocephaly, secondary to megencephaly, is an important component of PHTS and more prevalent than previously appreciated. Patients with PHTS have increased risks for breast and thyroid cancers, and early diagnosis is key to initiating timely screening to reduce patient morbidity and mortality. Clinicians should consider germline PTEN testing at an early point in the diagnostic work-up for patients with extreme macrocephaly.
  • Meulenbroek, O., Petersson, K. M., Voermans, N., Weber, B., & Fernández, G. (2004). Age differences in neural correlates of route encoding and route recognition. Neuroimage, 22, 1503-1514. doi:10.1016/j.neuroimage.2004.04.007.

    Abstract

    Spatial memory deficits are core features of aging-related changes in cognitive abilities. The neural correlates of these deficits are largely unknown. In the present study, we investigated the neural underpinnings of age-related differences in spatial memory by functional MRI using a navigational memory task with route encoding and route recognition conditions. We investigated 20 healthy young (18 - 29 years old) and 20 healthy old adults (53 - 78 years old) in a random effects analysis. Old subjects showed slightly poorer performance than young subjects. Compared to the control condition, route encoding and route recognition showed activation of the dorsal and ventral visual processing streams and the frontal eye fields in both groups of subjects. Compared to old adults, young subjects showed during route encoding stronger activations in the dorsal and the ventral visual processing stream (supramarginal gyrus and posterior fusiform/parahippocampal areas). In addition, young subjects showed weaker anterior parahippocampal activity during route recognition compared to the old group. In contrast, old compared to young subjects showed less suppressed activity in the left perisylvian region and the anterior cingulate cortex during route encoding. Our findings suggest that agerelated navigational memory deficits might be caused by less effective route encoding based on reduced posterior fusiform/parahippocampal and parietal functionality combined with diminished inhibition of perisylvian and anterior cingulate cortices correlated with less effective suppression of task-irrelevant information. In contrast, age differences in neural correlates of route recognition seem to be rather subtle. Old subjects might show a diminished familiarity signal during route recognition in the anterior parahippocampal region.
  • Meyer, A. S., Levelt, W. J. M., & Wissink, M. T. (1996). Een modulair model van zinsproductie. Logopedie, 9(2), 21-31.

    Abstract

    In deze bijdrage wordt een modulair model van zinsproductie besproken. De planningsprocessen, die aan de productie van een zin voorafgaan, kunnen in twee hoofdcomponenten onderverdeeld worden: deconceptualisering (het bedenken van de inhoud van de uiting) en de formulering (het vastleggen van de linguïstische vorm). Het formuleringsproces bestaat weer uit twee componenten, te weten de grammatische en fonologische codering. Ook deze componenten bestaan elk weer uit een aantal subcomponenten. Dit artikel beschrijft wat de specifieke taak van iedere component is, hoe deze uitgevoerd wordt en hoe de componenten samenwerken. Tevens worden enkele belangrijke methoden van taalproductie-onderzoek besproken.
  • Meyer, A. S., Van der Meulen, F. F., & Brooks, A. (2004). Eye movements during speech planning: Talking about present and remembered objects. Visual Cognition, 11, 553-576. doi:10.1080/13506280344000248.

    Abstract

    Earlier work has shown that speakers naming several objects usually look at each of them before naming them (e.g., Meyer, Sleiderink, & Levelt, 1998). In the present study, participants saw pictures and described them in utterances such as "The chair next to the cross is brown", where the colour of the first object was mentioned after another object had been mentioned. In Experiment 1, we examined whether the speakers would look at the first object (the chair) only once, before naming the object, or twice (before naming the object and before naming its colour). In Experiment 2, we examined whether speakers about to name the colour of the object would look at the object region again when the colour or the entire object had been removed while they were looking elsewhere. We found that speakers usually looked at the target object again before naming its colour, even when the colour was not displayed any more. Speakers were much less likely to fixate upon the target region when the object had been removed from view. We propose that the object contours may serve as a memory cue supporting the retrieval of the associated colour information. The results show that a speaker's eye movements in a picture description task, far from being random, depend on the available visual information and the content and structure of the planned utterance.
  • Meyer, A. S. (1996). Lexical access in phrase and sentence production: Results from picture-word interference experiments. Journal of Memory and Language, 35, 477-496. doi:doi:10.1006/jmla.1996.0026.

    Abstract

    Four experiments investigated the span of advance planning for phrases and short sentences. Dutch subjects were presented with pairs of objects, which they named using noun-phrase conjunctions (e.g., the translation equivalent of ''the arrow and the bag'') or sentences (''the arrow is next to the bag''). Each display was accompanied by an auditory distracter, which was related in form or meaning to the first or second noun of the utterance or unrelated to both. For sentences and phrases, the mean speech onset time was longer when the distracter was semantically related to the first or second noun and shorter when it was phonologically related to the first noun than when it was unrelated. No phonological facilitation was found for the second noun. This suggests that before utterance onset both target lemmas and the first target form were selected.
  • Minagawa-Kawai, Y., Cristia, A., Vendelin, I., Cabrol, D., & Dupoux, E. (2011). Assessing signal-driven mechanisms in neonates: Brain responses to temporally and spectrally different sounds. Frontiers in Psychology, 2, 135. doi:10.3389/fpsyg.2011.00135.

    Abstract

    Past studies have found that, in adults, the acoustic properties of sound signals (such as fast versus slow temporal features) differentially activate the left and right hemispheres, and some have hypothesized that left-lateralization for speech processing may follow from left-lateralization to rapidly changing signals. Here, we tested whether newborns’ brains show some evidence of signal-specific lateralization responses using near-infrared spectroscopy (NIRS) and auditory stimuli that elicits lateralized responses in adults, composed of segments that vary in duration and spectral diversity. We found significantly greater bilateral responses of oxygenated hemoglobin (oxy-Hb) in the temporal areas for stimuli with a minimum segment duration of 21 ms, than stimuli with a minimum segment duration of 667 ms. However, we found no evidence for hemispheric asymmetries dependent on the stimulus characteristics. We hypothesize that acoustic-based functional brain asymmetries may develop throughout early infancy, and discuss their possible relationship with brain asymmetries for language.
  • Minagawa-Kawai, Y., Cristia, A., & Dupoux, E. (2011). Cerebral lateralization and early speech acquisition: A developmental scenario. Developmental Cognitive Neuroscience, 1, 217-232. doi:10.1016/j.dcn.2011.03.005.

    Abstract

    During the past ten years, research using Near-infrared Spectroscopy (NIRS) to study the developing brain has provided groundbreaking evidence of brain functions in infants. This paper presents a theoretically oriented review of this wealth of evidence, summarizing recent NIRS data on language processing, without neglecting other neuroimaging or behavioral studies in infancy and adulthood. We review three competing classes of hypotheses (i.e. signal-driven, domain-driven, and learning biases hypotheses) regarding the causes of hemispheric specialization for speech processing. We assess the fit between each of these hypotheses and neuroimaging evidence in speech perception and show that none of the three hypotheses can account for the entire set of observations on its own. However, we argue that they provide a good fit when combined within a developmental perspective. According to our proposed scenario, lateralization for language emerges out of the interaction between pre-existing left–right biases in generic auditory processing (signal-driven hypothesis), and a left-hemisphere predominance of particular learning mechanisms (learning-biases hypothesis). As a result of this completed developmental process, the native language is represented in the left hemisphere predominantly. The integrated scenario enables to link infant and adult data, and points to many empirical avenues that need to be explored more systematically.
  • Mitterer, H., Chen, Y., & Zhou, X. (2011). Phonological abstraction in processing lexical-tone variation: Evidence from a learning paradigm. Cognitive Science, 35, 184-197. doi:10.1111/j.1551-6709.2010.01140.x.

    Abstract

    There is a growing consensus that the mental lexicon contains both abstract and word-specific acoustic information. To investigate their relative importance for word recognition, we tested to what extent perceptual learning is word specific or generalizable to other words. In an exposure phase, participants were divided into two groups; each group was semantically biased to interpret an ambiguous Mandarin tone contour as either tone1 or tone2. In a subsequent test phase, the perception of ambiguous contours was dependent on the exposure phase: Participants who heard ambiguous contours as tone1 during exposure were more likely to perceive ambiguous contours as tone1 than participants who heard ambiguous contours as tone2 during exposure. This learning effect was only slightly larger for previously encountered than for not previously encountered words. The results speak for an architecture with prelexical analysis of phonological categories to achieve both lexical access and episodic storage of exemplars.
  • Mitterer, H. (2011). Recognizing reduced forms: Different processing mechanisms for similar reductions. Journal of Phonetics, 39, 298-303. doi:10.1016/j.wocn.2010.11.009.

    Abstract

    Recognizing phonetically reduced forms is a huge challenge for spoken-word recognition. Phonetic reductions not only occur often, but also come in a variety of forms. The paper investigates how two similar forms of reductions – /t/-reduction and nasal place assimilation in Dutch – can eventually be recognized, focusing on the role of following phonological context. Previous research indicated that listeners take the following phonological context into account when compensating for /t/-reduction and nasal place assimilation. The current paper shows that these context effects arise in early perceptual processes for the perception of assimilated forms, but at a later stage of processing for the perception of /t/-reduced forms. This shows first that the recognition of apparently similarly reduced words may rely on different processing mechanisms and, second, that searching for dissociations over tasks is a promising research strategy to investigate how reduced forms are recognized.
  • Mitterer, H. (2011). The mental lexicon is fully specified: Evidence from eye-tracking. Journal of Experimental Psychology: Human Perception and Performance, 37(2), 496-513. doi:10.1037/a0020989.

    Abstract

    Four visual-world experiments, in which listeners heard spoken words and saw printed words, compared an optimal-perception account with the theory of phonological underspecification. This theory argues that default phonological features are not specified in the mental lexicon, leading to asymmetric lexical matching: Mismatching input ("pin") activates lexical entries with underspecified coronal stops ('tin'), but lexical entries with specified labial stops ('pin') are not activated by mismatching input ("tin"). The eye-tracking data failed to show such a pattern. Although words that were phonologically similar to the spoken target attracted more looks than unrelated distractors, this effect was symmetric in Experiment 1 with minimal pairs ("tin"- "pin") and in Experiments 2 and 3 with words with an onset overlap ("peacock" - "teacake"). Experiment 4 revealed that /t/-initial words were looked at more frequently if the spoken input mismatched only in terms of place than if it mismatched in place and voice, contrary to the assumption that /t/ is unspecified for place and voice. These results show that speech perception uses signal-driven information to the fullest, as predicted by an optimal perception account.
  • Moscoso del Prado Martín, F., Kostic, A., & Baayen, R. H. (2004). Putting the bits together: An information theoretical perspective on morphological processing. Cognition, 94(1), 1-18. doi:10.1016/j.cognition.2003.10.015.

    Abstract

    In this study we introduce an information-theoretical formulation of the emergence of type- and token-based effects in morphological processing. We describe a probabilistic measure of the informational complexity of a word, its information residual, which encompasses the combined influences of the amount of information contained by the target word and the amount of information carried by its nested morphological paradigms. By means of re-analyses of previously published data on Dutch words we show that the information residual outperforms the combination of traditional token- and type-based counts in predicting response latencies in visual lexical decision, and at the same time provides a parsimonious account of inflectional, derivational, and compounding processes.
  • Moscoso del Prado Martín, F., Ernestus, M., & Baayen, R. H. (2004). Do type and token effects reflect different mechanisms? Connectionist modeling of Dutch past-tense formation and final devoicing. Brain and Language, 90(1-3), 287-298. doi:10.1016/j.bandl.2003.12.002.

    Abstract

    In this paper, we show that both token and type-based effects in lexical processing can result from a single, token-based, system, and therefore, do not necessarily reflect different levels of processing. We report three Simple Recurrent Networks modeling Dutch past-tense formation. These networks show token-based frequency effects and type-based analogical effects closely matching the behavior of human participants when producing past-tense forms for both existing verbs and pseudo-verbs. The third network covers the full vocabulary of Dutch, without imposing predefined linguistic structure on the input or output words.
  • Moscoso del Prado Martín, F., Bertram, R., Haikio, T., Schreuder, R., & Baayen, R. H. (2004). Morphological family size in a morphologically rich language: The case of Finnish compared to Dutch and Hebrew. Journal of Experimental Psychology: Learning, Memory and Cognition, 30(6), 1271-1278. doi:10.1037/0278-7393.30.6.1271.

    Abstract

    Finnish has a very productive morphology in which a stem can give rise to several thousand words. This study presents a visual lexical decision experiment addressing the processing consequences of the huge productivity of Finnish morphology. The authors observed that in Finnish words with larger morphological families elicited shorter response latencies. However, in contrast to Dutch and Hebrew, it is not the complete morphological family of a complex Finnish word that codetermines response latencies but only the subset of words directly derived from the complex word itself. Comparisons with parallel experiments using translation equivalents in Dutch and Hebrew showed substantial cross-language predictivity of family size between Finnish and Dutch but not between Finnish and Hebrew, reflecting the different ways in which the Hebrew and Finnish morphological systems contribute to the semantic organization of concepts in the mental lexicon.
  • Mulder, K., & Hulstijn, J. H. (2011). Linguistic skills of adult native speakers, as a function of age and level of education. Applied Linguistics, 32, 475-494. doi:10.1093/applin/amr016.

    Abstract

    This study assessed, in a sample of 98 adult native speakers of Dutch, how their lexical skills and their speaking proficiency varied as a function of their age and level of education and profession (EP). Participants, categorized in terms of their age (18–35, 36–50, and 51–76 years old) and the level of their EP (low versus high), were tested on their lexical knowledge, lexical fluency, and lexical memory, and they performed four speaking tasks, differing in genre and formality. Speaking performance was rated in terms of communicative adequacy and in terms of number of words, number of T-units, words per T-unit, content words per T-unit, hesitations per T-unit, and grammatical errors per T-unit. Increasing age affected lexical knowledge positively but lexical fluency and memory negatively. High EP positively affected lexical knowledge and memory but EP did not affect lexical fluency. Communicative adequacy of the responses in the speaking tasks was positively affected by high EP but was not affected by age. It is concluded that, given the large variability in native speakers’ language knowledge and skills, studies investigating the question of whether second-language learners can reach native levels of proficiency, should take native-speaker variability into account.

    Additional information

    Mulder_2011_Supplementary Data.doc
  • Munafò, M. R., Freathy, R. M., Ring, S. M., St Pourcain, B., & Smith, G. D. (2011). Association of COMT Val108/158Met Genotype and Cigarette Smoking in Pregnant Women. Nicotine & Tobacco Research, 13(2), 55-63. doi:10.1093/ntr/ntq209.

    Abstract

    INTRODUCTION: Smoking behaviors, including heaviness of smoking and smoking cessation, are known to be under a degree of genetic influence. The enzyme catechol O-methyltransferase (COMT) is of relevance in studies of smoking behavior and smoking cessation due to its presence in dopaminergic brain regions. While the COMT gene is therefore one of the more promising candidate genes for smoking behavior, some inconsistencies have begun to emerge. METHODS: We explored whether the rs4680 A (Met) allele of the COMT gene predicts increased heaviness of smoking and reduced likelihood of smoking cessation in a large population-based cohort of pregnant women. We further conducted a meta-analysis of published data from community samples investigating the association of this polymorphism with heaviness of smoking and smoking status. RESULTS: In our primary sample, the A (Met) allele was associated with increased heaviness of smoking before pregnancy but not with the odds of continuing to smoke in pregnancy either in the first trimester or in the third trimester. Meta-analysis also indicated modest evidence of association of the A (Met) allele with increased heaviness of smoking but not with persistent smoking. CONCLUSIONS: Our data suggest a weak association between COMT genotype and heaviness of smoking, which is supported by our meta-analysis. However, it should be noted that the strength of evidence for this association was modest. Neither our primary data nor our meta-analysis support an association between COMT genotype and smoking cessation. Therefore, COMT remains a plausible candidate gene for smoking behavior phenotypes, in particular, heaviness of smoking.
  • Narasimhan, B., Sproat, R., & Kiraz, G. (2004). Schwa-deletion in Hindi text-to-speech synthesis. International Journal of Speech Technology, 7(4), 319-333. doi:10.1023/B:IJST.0000037075.71599.62.

    Abstract

    We describe the phenomenon of schwa-deletion in Hindi and how it is handled in the pronunciation component of a multilingual concatenative text-to-speech system. Each of the consonants in written Hindi is associated with an “inherent” schwa vowel which is not represented in the orthography. For instance, the Hindi word pronounced as [namak] (’salt’) is represented in the orthography using the consonantal characters for [n], [m], and [k]. Two main factors complicate the issue of schwa pronunciation in Hindi. First, not every schwa following a consonant is pronounced within the word. Second, in multimorphemic words, the presence of a morpheme boundary can block schwa deletion where it might otherwise occur. We propose a model for schwa-deletion which combines a general purpose schwa-deletion rule proposed in the linguistics literature (Ohala, 1983), with additional morphological analysis necessitated by the high frequency of compounds in our database. The system is implemented in the framework of finite-state transducer technology.
  • Narasimhan, B., & Gullberg, M. (2011). The role of input frequency and semantic transparency in the acquisition of verb meaning: Evidence from placement verbs in Tamil and Dutch. Journal of Child Language, 38, 504-532. doi:10.1017/S0305000910000164.

    Abstract

    We investigate how Tamil- and Dutch-speaking adults and 4- to 5-year-old children use caused posture verbs (‘lay/stand a bottle on a table’) to label placement events in which objects are oriented vertically or horizontally. Tamil caused posture verbs consist of morphemes that individually label the causal and result subevents (nikka veyyii ‘make stand’; paDka veyyii ‘make lie’), occurring in situational and discourse contexts where object orientation is at issue. Dutch caused posture verbs are less semantically transparent: they are monomorphemic (zetten ‘set/stand’; leggen ‘lay’), often occurring in contexts where factors other than object orientation determine use. Caused posture verbs occur rarely in corpora of Tamil input, whereas in Dutch input, they are used frequently. Elicited production data reveal that Tamil four-year-olds use infrequent placement verbs appropriately whereas Dutch children use high-frequency placement verbs inappropriately even at age five. Semantic transparency exerts a stronger influence than input frequency in constraining children’s verb meaning acquisition.
  • Newbury, D. F., Cleak, J. D., Banfield, E., Marlow, A. J., Fisher, S. E., Monaco, A. P., Stott, C. M., Merricks, M. J., Goodyer, I. M., Slonims, V., Baird, G., Bolton, P., Everitt, A., Hennessy, E., Main, M., Helms, P., Kindley, A. D., Hodson, A., Watson, J., O’Hare, A. and 9 moreNewbury, D. F., Cleak, J. D., Banfield, E., Marlow, A. J., Fisher, S. E., Monaco, A. P., Stott, C. M., Merricks, M. J., Goodyer, I. M., Slonims, V., Baird, G., Bolton, P., Everitt, A., Hennessy, E., Main, M., Helms, P., Kindley, A. D., Hodson, A., Watson, J., O’Hare, A., Cohen, W., Cowie, H., Steel, J., MacLean, A., Seckl, J., Bishop, D. V. M., Simkin, Z., Conti-Ramsden, G., & Pickles, A. (2004). Highly significant linkage to the SLI1 Locus in an expanded sample of Individuals affected by specific language impairment. American Journal of Human Genetics, 74(6), 1225-1238. doi:10.1086/421529.

    Abstract

    Specific language impairment (SLI) is defined as an unexplained failure to acquire normal language skills despite adequate intelligence and opportunity. We have reported elsewhere a full-genome scan in 98 nuclear families affected by this disorder, with the use of three quantitative traits of language ability (the expressive and receptive tests of the Clinical Evaluation of Language Fundamentals and a test of nonsense word repetition). This screen implicated two quantitative trait loci, one on chromosome 16q (SLI1) and a second on chromosome 19q (SLI2). However, a second independent genome screen performed by another group, with the use of parametric linkage analyses in extended pedigrees, found little evidence for the involvement of either of these regions in SLI. To investigate these loci further, we have collected a second sample, consisting of 86 families (367 individuals, 174 independent sib pairs), all with probands whose language skills are ⩾1.5 SD below the mean for their age. Haseman-Elston linkage analysis resulted in a maximum LOD score (MLS) of 2.84 on chromosome 16 and an MLS of 2.31 on chromosome 19, both of which represent significant linkage at the 2% level. Amalgamation of the wave 2 sample with the cohort used for the genome screen generated a total of 184 families (840 individuals, 393 independent sib pairs). Analysis of linkage within this pooled group strengthened the evidence for linkage at SLI1 and yielded a highly significant LOD score (MLS = 7.46, interval empirical P<.0004). Furthermore, linkage at the same locus was also demonstrated to three reading-related measures (basic reading [MLS = 1.49], spelling [MLS = 2.67], and reading comprehension [MLS = 1.99] subtests of the Wechsler Objectives Reading Dimensions).
  • Noble, C. H., Rowland, C. F., & Pine, J. M. (2011). Comprehension of argument structure and semantic roles: Evidence from English-learning children and the forced-choice pointing paradigm. Cognitive Science, 35(5), 963-982. doi:10.1111/j.1551-6709.2011.01175.x.

    Abstract

    Research using the intermodal preferential looking paradigm (IPLP) has consistently shown that English-learning children aged 2 can associate transitive argument structure with causal events. However, studies using the same methodology investigating 2-year-old children’s knowledge of the conjoined agent intransitive and semantic role assignment have reported inconsistent findings. The aim of the present study was to establish at what age English-learning children have verb-general knowledge of both transitive and intransitive argument structure using a new method: the forced-choice pointing paradigm. The results suggest that young 2-year-olds can associate transitive structures with causal (or externally caused) events and can use transitive structure to assign agent and patient roles correctly. However, the children were unable to associate the conjoined agent intransitive with noncausal events until aged 3;4. The results confirm the pattern from previous IPLP studies and indicate that children may develop the ability to comprehend different aspects of argument structure at different ages. The implications for theories of language acquisition and the nature of the language acquisition mechanism are discussed.
  • Norris, D., & Cutler, A. (1988). Speech recognition in French and English. MRC News, 39, 30-31.
  • Norris, D., & Cutler, A. (1988). The relative accessibility of phonemes and syllables. Perception and Psychophysics, 43, 541-550. Retrieved from http://www.psychonomic.org/search/view.cgi?id=8530.

    Abstract

    Previous research comparing detection times for syllables and for phonemes has consistently found that syllables are responded to faster than phonemes. This finding poses theoretical problems for strictly hierarchical models of speech recognition, in which smaller units should be able to be identified faster than larger units. However, inspection of the characteristics of previous experiments’stimuli reveals that subjects have been able to respond to syllables on the basis of only a partial analysis of the stimulus. In the present experiment, five groups of subjects listened to identical stimulus material. Phoneme and syllable monitoring under standard conditions was compared with monitoring under conditions in which near matches of target and stimulus occurred on no-response trials. In the latter case, when subjects were forced to analyze each stimulus fully, phonemes were detected faster than syllables.
  • Ogdie, M. N., Fisher, S. E., Yang, M., Ishii, J., Francks, C., Loo, S. K., Cantor, R. M., McCracken, J. T., McGough, J. J., Smalley, S. L., & Nelson, S. F. (2004). Attention Deficit Hyperactivity Disorder: Fine mapping supports linkage to 5p13, 6q12, 16p13, and 17p11. American Journal of Human Genetics, 75(4), 661-668. doi:10.1086/424387.

    Abstract

    We completed fine mapping of nine positional candidate regions for attention-deficit/hyperactivity disorder (ADHD) in an extended population sample of 308 affected sibling pairs (ASPs), constituting the largest linkage sample of families with ADHD published to date. The candidate chromosomal regions were selected from all three published genomewide scans for ADHD, and fine mapping was done to comprehensively validate these positional candidate regions in our sample. Multipoint maximum LOD score (MLS) analysis yielded significant evidence of linkage on 6q12 (MLS 3.30; empiric P=.024) and 17p11 (MLS 3.63; empiric P=.015), as well as suggestive evidence on 5p13 (MLS 2.55; empiric P=.091). In conjunction with the previously reported significant linkage on the basis of fine mapping 16p13 in the same sample as this report, the analyses presented here indicate that four chromosomal regions—5p13, 6q12, 16p13, and 17p11—are likely to harbor susceptibility genes for ADHD. The refinement of linkage within each of these regions lays the foundation for subsequent investigations using association methods to detect risk genes of moderate effect size.
  • Omar, R., Henley, S. M., Bartlett, J. W., Hailstone, J. C., Gordon, E., Sauter, D., Frost, C., Scott, S. K., & Warren, J. D. (2011). The structural neuroanatomy of music emotion recognition: Evidence from frontotemporal lobar degeneration. Neuroimage, 56, 1814-1821. doi:10.1016/j.neuroimage.2011.03.002.

    Abstract

    Despite growing clinical and neurobiological interest in the brain mechanisms that process emotion in music, these mechanisms remain incompletely understood. Patients with frontotemporal lobar degeneration (FTLD) frequently exhibit clinical syndromes that illustrate the effects of breakdown in emotional and social functioning. Here we investigated the neuroanatomical substrate for recognition of musical emotion in a cohort of 26 patients with FTLD (16 with behavioural variant frontotemporal dementia, bvFTD, 10 with semantic dementia, SemD) using voxel-based morphometry. On neuropsychological evaluation, patients with FTLD showed deficient recognition of canonical emotions (happiness, sadness, anger and fear) from music as well as faces and voices compared with healthy control subjects. Impaired recognition of emotions from music was specifically associated with grey matter loss in a distributed cerebral network including insula, orbitofrontal cortex, anterior cingulate and medial prefrontal cortex, anterior temporal and more posterior temporal and parietal cortices, amygdala and the subcortical mesolimbic system. This network constitutes an essential brain substrate for recognition of musical emotion that overlaps with brain regions previously implicated in coding emotional value, behavioural context, conceptual knowledge and theory of mind. Musical emotion recognition may probe the interface of these processes, delineating a profile of brain damage that is essential for the abstraction of complex social emotions.
  • Oostenveld, R., Fries, P., Maris, E., & Schoffelen, J.-M. (2011). FieldTrip: Open source software for advanced analysis of MEG, EEG, and Invasive Electrophysiological Data. Computational Intelligence and Neuroscience, 2011: 156869, pp. 156869. doi:10.1155/2011/156869.

    Abstract

    This paper describes FieldTrip, an open source software package that we developed for the analysis of MEG, EEG, and other electrophysiological data. The software is implemented as a MATLAB toolbox and includes a complete set of consistent and user-friendly high-level functions that allow experimental neuroscientists to analyze experimental data. It includes algorithms for simple and advanced analysis, such as time-frequency analysis using multitapers, source reconstruction using dipoles, distributed sources and beamformers, connectivity analysis, and nonparametric statistical permutation tests at the channel and source level. The implementation as toolbox allows the user to perform elaborate and structured analyses of large data sets using the MATLAB command line and batch scripting. Furthermore, users and developers can easily extend the functionality and implement new algorithms. The modular design facilitates the reuse in other software packages.
  • O’Roak, B. J., Deriziotis, P., Lee, C., Vives, L., Schwartz, J. J., Girirajan, S., Karakoc, E., MacKenzie, A. P., Ng, S. B., Baker, C., Rieder, M. J., Nickerson, D. A., Bernier, R., Fisher, S. E., Shendure, J., & Eichler, E. E. (2011). Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations. Nature Genetics, 43, 585-589. doi:10.1038/ng.835.

    Abstract

    Evidence for the etiology of autism spectrum disorders (ASDs) has consistently pointed to a strong genetic component complicated by substantial locus heterogeneity1, 2. We sequenced the exomes of 20 individuals with sporadic ASD (cases) and their parents, reasoning that these families would be enriched for de novo mutations of major effect. We identified 21 de novo mutations, 11 of which were protein altering. Protein-altering mutations were significantly enriched for changes at highly conserved residues. We identified potentially causative de novo events in 4 out of 20 probands, particularly among more severely affected individuals, in FOXP1, GRIN2B, SCN1A and LAMC3. In the FOXP1 mutation carrier, we also observed a rare inherited CNTNAP2 missense variant, and we provide functional support for a multi-hit model for disease risk3. Our results show that trio-based exome sequencing is a powerful approach for identifying new candidate genes for ASDs and suggest that de novo mutations may contribute substantially to the genetic etiology of ASDs.

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  • Otake, T., Yoneyama, K., Cutler, A., & van der Lugt, A. (1996). The representation of Japanese moraic nasals. Journal of the Acoustical Society of America, 100, 3831-3842. doi:10.1121/1.417239.

    Abstract

    Nasal consonants in syllabic coda position in Japanese assimilate to the place of articulation of a following consonant. The resulting forms may be perceived as different realizations of a single underlying unit, and indeed the kana orthographies represent them with a single character. In the present study, Japanese listeners' response time to detect nasal consonants was measured. Nasals in coda position, i.e., moraic nasals, were detected faster and more accurately than nonmoraic nasals, as reported in previous studies. The place of articulation with which moraic nasals were realized affected neither response time nor accuracy. Non-native subjects who knew no Japanese, given the same materials with the same instructions, simply failed to respond to moraic nasals which were realized bilabially. When the nasals were cross-spliced across place of articulation contexts the Japanese listeners still showed no significant place of articulation effects, although responses were faster and more accurate to unspliced than to cross-spliced nasals. When asked to detect the phoneme following the (cross-spliced) moraic nasal, Japanese listeners showed effects of mismatch between nasal and context, but non-native listeners did not. Together, these results suggest that Japanese listeners are capable of very rapid abstraction from phonetic realization to a unitary representation of moraic nasals; but they can also use the phonetic realization of a moraic nasal effectively to obtain anticipatory information about following phonemes.
  • Ottoni, C., Ricaut, F.-X., Vanderheyden, N., Brucato, N., Waelkens, M., & Decorte, R. (2011). Mitochondrial analysis of a Byzantine population reveals the differential impact of multiple historical events in South Anatolia. European Journal of Human Genetics, 19, 571-576. doi:10.1038/ejhg.2010.230.

    Abstract

    The archaeological site of Sagalassos is located in Southwest Turkey, in the western part of the Taurus mountain range. Human occupation of its territory is attested from the late 12th millennium BP up to the 13th century AD. By analysing the mtDNA variation in 85 skeletons from Sagalassos dated to the 11th–13th century AD, this study attempts to reconstruct the genetic signature potentially left in this region of Anatolia by the many civilizations, which succeeded one another over the centuries until the mid-Byzantine period (13th century BC). Authentic ancient DNA data were determined from the control region and some SNPs in the coding region of the mtDNA in 53 individuals. Comparative analyses with up to 157 modern populations allowed us to reconstruct the origin of the mid-Byzantine people still dwelling in dispersed hamlets in Sagalassos, and to detect the maternal contribution of their potential ancestors. By integrating the genetic data with historical and archaeological information, we were able to attest in Sagalassos a significant maternal genetic signature of Balkan/Greek populations, as well as ancient Persians and populations from the Italian peninsula. Some contribution from the Levant has been also detected, whereas no contribution from Central Asian population could be ascertained.
  • Ozyurek, A. (1996). How children talk about a conversation. Journal of Child Language, 23(3), 693-714. doi:10.1017/S0305000900009004.

    Abstract

    This study investigates how children of different ages talk about a conversation that they have witnessed. 48 Turkish children, five, nine and thirteen years in age, saw a televised dialogue between two Sesame Street characters (Bert and Ernie). Afterward, they narrated what they had seen and heard. Their reports were analysed for the development of linguistic devices used to orient their listeners to the relevant properties of a conversational exchange. Each utterance in the child's narrative was analysed as to its conversational role: (1) whether the child used direct or indirect quotation frames; (2) whether the child marked the boundaries of conversational turns using speakers' names and (3) whether the child used a marker for pairing of utterances made by different speakers (agreement-disagreement, request-refusal, questioning-answering). Within pairings, children's use of (a) the temporal and evaluative connectivity markers and (b) the kind of verb of saying were identified. The data indicate that there is a developmental change in children's ability to use appropriate linguistic means to orient their listeners to the different properties of a conversation. The development and use of these linguistic means enable the child to establish different social roles in a narrative interaction. The findings are interpreted in terms of the child's social-communicative development from being a ' character' to becoming a ' narrator' and ' author' of the reported conversation in the narrative situation.
  • Paternoster, L., Evans, D. M., Aagaard Nohr, E., Holst, C., Gaborieau, V., Brennan, P., Prior Gjesing, A., Grarup, N., Witte, D. R., Jørgensen, T., Linneberg, A., Lauritzen, T., Sandbaek, A., Hansen, T., Pedersen, O., Elliott, K. S., Kemp, J. P., St Pourcain, B., McMahon, G., Zelenika, D. and 5 morePaternoster, L., Evans, D. M., Aagaard Nohr, E., Holst, C., Gaborieau, V., Brennan, P., Prior Gjesing, A., Grarup, N., Witte, D. R., Jørgensen, T., Linneberg, A., Lauritzen, T., Sandbaek, A., Hansen, T., Pedersen, O., Elliott, K. S., Kemp, J. P., St Pourcain, B., McMahon, G., Zelenika, D., Hager, J., Lathrop, M., Timpson, N. J., Davey Smith, G., & Sørensen, T. I. A. (2011). Genome-Wide Population-Based Association Study of Extremely Overweight Young Adults – The GOYA Study. PLoS ONE, 6(9): e24303. doi:10.1371/journal.pone.0024303.

    Abstract

    Background Thirty-two common variants associated with body mass index (BMI) have been identified in genome-wide association studies, explaining ∼1.45% of BMI variation in general population cohorts. We performed a genome-wide association study in a sample of young adults enriched for extremely overweight individuals. We aimed to identify new loci associated with BMI and to ascertain whether using an extreme sampling design would identify the variants known to be associated with BMI in general populations. Methodology/Principal Findings From two large Danish cohorts we selected all extremely overweight young men and women (n = 2,633), and equal numbers of population-based controls (n = 2,740, drawn randomly from the same populations as the extremes, representing ∼212,000 individuals). We followed up novel (at the time of the study) association signals (p<}0.001) from the discovery cohort in a genome-wide study of 5,846 Europeans, before attempting to replicate the most strongly associated 28 SNPs in an independent sample of Danish individuals (n = 20,917) and a population-based cohort of 15-year-old British adolescents (n = 2,418). Our discovery analysis identified SNPs at three loci known to be associated with BMI with genome-wide confidence (P{<}5×10−8; FTO, MC4R and FAIM2). We also found strong evidence of association at the known TMEM18, GNPDA2, SEC16B, TFAP2B, SH2B1 and KCTD15 loci (p{<}0.001), and nominal association (p{<0.05) at a further 8 loci known to be associated with BMI. However, meta-analyses of our discovery and replication cohorts identified no novel associations. Significance Our results indicate that the detectable genetic variation associated with extreme overweight is very similar to that previously found for general BMI. This suggests that population-based study designs with enriched sampling of individuals with the extreme phenotype may be an efficient method for identifying common variants that influence quantitative traits and a valid alternative to genotyping all individuals in large population-based studies, which may require tens of thousands of subjects to achieve similar power.
  • Petersson, K. M., Forkstam, C., & Ingvar, M. (2004). Artificial syntactic violations activate Broca’s region. Cognitive Science, 28(3), 383-407. doi:10.1207/s15516709cog2803_4.

    Abstract

    In the present study, using event-related functional magnetic resonance imaging, we investigated a group of participants on a grammaticality classification task after they had been exposed to well-formed consonant strings generated from an artificial regular grammar.We used an implicit acquisition paradigm in which the participants were exposed to positive examples. The objective of this studywas to investigate whether brain regions related to language processing overlap with the brain regions activated by the grammaticality classification task used in the present study. Recent meta-analyses of functional neuroimaging studies indicate that syntactic processing is related to the left inferior frontal gyrus (Brodmann's areas 44 and 45) or Broca's region. In the present study, we observed that artificial grammaticality violations activated Broca's region in all participants. This observation lends some support to the suggestions that artificial grammar learning represents a model for investigating aspects of language learning in infants.
  • Petersson, K. M. (2004). The human brain, language, and implicit learning. Impuls, Tidsskrift for psykologi (Norwegian Journal of Psychology), 58(3), 62-72.
  • Petrovic, P., Petersson, K. M., Hansson, P., & Ingvar, M. (2004). Brainstem involvement in the initial response to pain. NeuroImage, 22, 995-1005. doi:10.1016/j.neuroimage.2004.01.046.

    Abstract

    The autonomic responses to acute pain exposure usually habituate rapidly while the subjective ratings of pain remain high for more extended periods of time. Thus, systems involved in the autonomic response to painful stimulation, for example the hypothalamus and the brainstem, would be expected to attenuate the response to pain during prolonged stimulation. This suggestion is in line with the hypothesis that the brainstem is specifically involved in the initial response to pain. To probe this hypothesis, we performed a positron emission tomography (PET) study where we scanned subjects during the first and second minute of a prolonged tonic painful cold stimulation (cold pressor test) and nonpainful cold stimulation. Galvanic skin response (GSR) was recorded during the PET scanning as an index of autonomic sympathetic response. In the main effect of pain, we observed increased activity in the thalamus bilaterally, in the contralateral insula and in the contralateral anterior cingulate cortex but no significant increases in activity in the primary or secondary somatosensory cortex. The autonomic response (GSR) decreased with stimulus duration. Concomitant with the autonomic response, increased activity was observed in brainstem and hypothalamus areas during the initial vs. the late stimulation. This effect was significantly stronger for the painful than for the cold stimulation. Activity in the brainstem showed pain-specific covariation with areas involved in pain processing, indicating an interaction between the brainstem and cortical pain networks. The findings indicate that areas in the brainstem are involved in the initial response to noxious stimulation, which is also characterized by an increased sympathetic response.
  • Petrovic, P., Carlsson, K., Petersson, K. M., Hansson, P., & Ingvar, M. (2004). Context-dependent deactivation of the amygdala during pain. Journal of Cognitive Neuroscience, 16, 1289-1301.

    Abstract

    The amygdala has been implicated in fundamental functions for the survival of the organism, such as fear and pain. In accord with this, several studies have shown increased amygdala activity during fear conditioning and the processing of fear-relevant material in human subjects. In contrast, functional neuroimaging studies of pain have shown a decreased amygdala activity. It has previously been proposed that the observed deactivations of the amygdala in these studies indicate a cognitive strategy to adapt to a distressful but in the experimental setting unavoidable painful event. In this positron emission tomography study, we show that a simple contextual manipulation, immediately preceding a painful stimulation, that increases the anticipated duration of the painful event leads to a decrease in amygdala activity and modulates the autonomic response during the noxious stimulation. On a behavioral level, 7 of the 10 subjects reported that they used coping strategies more intensely in this context. We suggest that the altered activity in the amygdala may be part of a mechanism to attenuate pain-related stress responses in a context that is perceived as being more aversive. The study also showed an increased activity in the rostral part of anterior cingulate cortex in the same context in which the amygdala activity decreased, further supporting the idea that this part of the cingulate cortex is involved in the modulation of emotional and pain networks
  • Phok, K., Moisan, A., Rinaldi, D., Brucato, N., Carpousis, A. J., Gaspin, C., & Clouet-d'Orval, B. (2011). Identification of CRISPR and riboswitch related RNAs among novel non-coding RNAs of the euryarchaeon Pyrococcus abyssi. BMC Genomics, 12, 312. doi:10.1186/1471-2164-12-312.

    Abstract

    Background

    Noncoding RNA (ncRNA) has been recognized as an important regulator of gene expression networks in Bacteria and Eucaryota. Little is known about ncRNA in thermococcal archaea except for the eukaryotic-like C/D and H/ACA modification guide RNAs.
    Results

    Using a combination of in silico and experimental approaches, we identified and characterized novel P. abyssi ncRNAs transcribed from 12 intergenic regions, ten of which are conserved throughout the Thermococcales. Several of them accumulate in the late-exponential phase of growth. Analysis of the genomic context and sequence conservation amongst related thermococcal species revealed two novel P. abyssi ncRNA families. The CRISPR family is comprised of crRNAs expressed from two of the four P. abyssi CRISPR cassettes. The 5'UTR derived family includes four conserved ncRNAs, two of which have features similar to known bacterial riboswitches. Several of the novel ncRNAs have sequence similarities to orphan OrfB transposase elements. Based on RNA secondary structure predictions and experimental results, we show that three of the twelve ncRNAs include Kink-turn RNA motifs, arguing for a biological role of these ncRNAs in the cell. Furthermore, our results show that several of the ncRNAs are subjected to processing events by enzymes that remain to be identified and characterized.
    Conclusions

    This work proposes a revised annotation of CRISPR loci in P. abyssi and expands our knowledge of ncRNAs in the Thermococcales, thus providing a starting point for studies needed to elucidate their biological function.

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