Publications

Displaying 301 - 400 of 1281
  • Enfield, N. J., & Diffloth, G. (2009). Phonology and sketch grammar of Kri, a Vietic language of Laos. Cahiers de Linguistique - Asie Orientale (CLAO), 38(1), 3-69.
  • Enfield, N. J. (2009). Relationship thinking and human pragmatics. Journal of Pragmatics, 41, 60-78. doi:10.1016/j.pragma.2008.09.007.

    Abstract

    The approach to pragmatics explored in this article focuses on elements of social interaction which are of universal relevance, and which may provide bases for a comparative approach. The discussion is anchored by reference to a fragment of conversation from a video-recording of Lao speakers during a home visit in rural Laos. The following points are discussed. First, an understanding of the full richness of context is indispensable for a proper understanding of any interaction. Second, human relationships are a primary locus of social organization, and as such constitute a key focus for pragmatics. Third, human social intelligence forms a universal cognitive under-carriage for interaction, and requires careful cross-cultural study. Fourth, a neo-Peircean framework for a general understanding of semiotic processes gives us a way of stepping away from language as our basic analytical frame. It is argued that in order to get a grip on pragmatics across human groups, we need to take a comparative approach in the biological sense—i.e. with reference to other species as well. From this perspective, human pragmatics is about using semiotic resources to try to meet goals in the realm of social relationships.
  • Enfield, N. J. (2009). The anatomy of meaning: Speech, gesture, and composite utterances. Cambridge: Cambridge University Press.
  • Enfield, N. J., Levinson, S. C., & Stivers, T. (2009). Social action formulation: A "10-minutes" task. In A. Majid (Ed.), Field manual volume 12 (pp. 54-55). Nijmegen: Max Planck Institute for Psycholinguistics. doi:10.17617/2.883564.

    Abstract

    Human actions in the social world – like greeting, requesting, complaining, accusing, asking, confirming, etc. – are recognised through the interpretation of signs. Language is where much of the action is, but gesture, facial expression and other bodily actions matter as well. The goal of this task is to establish a maximally rich description of a representative, good quality piece of conversational interaction, which will serve as a reference point for comparative exploration of the status of social actions and their formulation across language
  • Erard, M. (2009). How Many Languages? Linguists Discover New Tongues in China. Science, 324(5925), 332-333. doi:10.1126/science.324.5925.332a.
  • Ergin, R., Meir, I., Ilkbasaran, D., Padden, C., & Jackendoff, R. (2018). The Development of Argument Structure in Central Taurus Sign Language. Sign Language & Linguistics, 18(4), 612-639. doi:10.1353/sls.2018.0018.

    Abstract

    One of the fundamental issues for a language is its capacity to express
    argument structure unambiguously. This study presents evidence
    for the emergence and the incremental development of these
    basic mechanisms in a newly developing language, Central Taurus
    Sign Language. Our analyses identify universal patterns in both the
    emergence and development of these mechanisms and in languagespecific
    trajectories.
  • Ergin, R., Senghas, A., Jackendoff, R., & Gleitman, L. (2018). Structural cues for symmetry, asymmetry, and non-symmetry in Central Taurus Sign Language. In C. Cuskley, M. Flaherty, H. Little, L. McCrohon, A. Ravignani, & T. Verhoef (Eds.), Proceedings of the 12th International Conference on the Evolution of Language (EVOLANG XII) (pp. 104-106). Toruń, Poland: NCU Press. doi:10.12775/3991-1.025.
  • Ernestus, M., & Smith, R. (2018). Qualitative and quantitative aspects of phonetic variation in Dutch eigenlijk. In F. Cangemi, M. Clayards, O. Niebuhr, B. Schuppler, & M. Zellers (Eds.), Rethinking reduction: Interdisciplinary perspectives on conditions, mechanisms, and domains for phonetic variation (pp. 129-163). Berlin/Boston: De Gruyter Mouton.
  • Ernestus, M. (2009). The roles of reconstruction and lexical storage in the comprehension of regular pronunciation variants. In Proceedings of the 10th Annual Conference of the International Speech Communication Association (Interspeech 2009) (pp. 1875-1878). Causal Productions Pty Ltd.

    Abstract

    This paper investigates how listeners process regular pronunciation variants, resulting from simple general reduction processes. Study 1 shows that when listeners are presented with new words, they store the pronunciation variants presented to them, whether these are unreduced or reduced. Listeners thus store information on word-specific pronunciation variation. Study 2 suggests that if participants are presented with regularly reduced pronunciations, they also reconstruct and store the corresponding unreduced pronunciations. These unreduced pronunciations apparently have special status. Together the results support hybrid models of speech processing, assuming roles for both exemplars and abstract representations.
  • Estruch, S. B., Graham, S. A., Quevedo, M., Vino, A., Dekkers, D. H. W., Deriziotis, P., Sollis, E., Demmers, J., Poot, R. A., & Fisher, S. E. (2018). Proteomic analysis of FOXP proteins reveals interactions between cortical transcription factors associated with neurodevelopmental disorders. Human Molecular Genetics, 27(7), 1212-1227. doi:10.1093/hmg/ddy035.

    Abstract

    FOXP transcription factors play important roles in neurodevelopment, but little is known about how their transcriptional activity is regulated. FOXP proteins cooperatively regulate gene expression by forming homo- and hetero-dimers with each other. Physical associations with other transcription factors might also modulate the functions of FOXP proteins. However, few FOXP-interacting transcription factors have been identified so far. Therefore, we sought to discover additional transcription factors that interact with the brain-expressed FOXP proteins, FOXP1, FOXP2 and FOXP4, through affinity-purifications of protein complexes followed by mass spectrometry. We identified seven novel FOXP-interacting transcription factors (NR2F1, NR2F2, SATB1, SATB2, SOX5, YY1 and ZMYM2), five of which have well-established roles in cortical development. Accordingly, we found that these transcription factors are co-expressed with FoxP2 in the deep layers of the cerebral cortex and also in the Purkinje cells of the cerebellum, suggesting that they may cooperate with the FoxPs to regulate neural gene expression in vivo. Moreover, we demonstrated that etiological mutations of FOXP1 and FOXP2, known to cause neurodevelopmental disorders, severely disrupted the interactions with FOXP-interacting transcription factors. Additionally, we pinpointed specific regions within FOXP2 sequence involved in mediating these interactions. Thus, by expanding the FOXP interactome we have uncovered part of a broader neural transcription factor network involved in cortical development, providing novel molecular insights into the transcriptional architecture underlying brain development and neurodevelopmental disorders.
  • Estruch, S. B. (2018). Characterization of transcription factors in monogenic disorders of speech and language. PhD Thesis, Radboud University Nijmegen, Nijmegen.
  • Evans, N., Bergqvist, H., & San Roque, L. (2018). The grammar of engagement I: Framework and initial exemplification. Language and Cognition, 10, 110-140. doi:10.1017/langcog.2017.21.

    Abstract

    Human language offers rich ways to track, compare, and engage the attentional and epistemic states of interlocutors. While this task is central to everyday communication, our knowledge of the cross-linguistic grammatical means that target such intersubjective coordination has remained basic. In two serialised papers, we introduce the term ‘engagement’ to refer to grammaticalised means for encoding the relative mental directedness of speaker and addressee towards an entity or state of affairs, and describe examples of engagement systems from around the world. Engagement systems express the speaker’s assumptions about the degree to which their attention or knowledge is shared (or not shared) by the addressee. Engagement categories can operate at the level of entities in the here-and-now (deixis), in the unfolding discourse (definiteness vs indefiniteness), entire event-depicting propositions (through markers with clausal scope), and even metapropositions (potentially scoping over evidential values). In this first paper, we introduce engagement and situate it with respect to existing work on intersubjectivity in language. We then explore the key role of deixis in coordinating attention and expressing engagement, moving through increasingly intercognitive deictic systems from those that focus on the the location of the speaker, to those that encode the attentional state of the addressee.
  • Evans, N., Bergqvist, H., & San Roque, L. (2018). The grammar of engagement II: Typology and diachrony. Language and Cognition, 10(1), 141-170. doi:10.1017/langcog.2017.22.

    Abstract

    Engagement systems encode the relative accessibility of an entity or state of affairs to the speaker and addressee, and are thus underpinned by our social cognitive capacities. In our first foray into engagement (Part 1), we focused on specialised semantic contrasts as found in entity-level deictic systems, tailored to the primal scenario for establishing joint attention. This second paper broadens out to an exploration of engagement at the level of events and even metapropositions, and comments on how such systems may evolve. The languages Andoke and Kogi demonstrate what a canonical system of engagement with clausal scope looks like, symmetrically assigning ‘knowing’ and ‘unknowing’ values to speaker and addressee. Engagement is also found cross-cutting other epistemic categories such as evidentiality, for example where a complex assessment of relative speaker and addressee awareness concerns the source of information rather than the proposition itself. Data from the language Abui reveal that one way in which engagement systems can develop is by upscoping demonstratives, which normally denote entities, to apply at the level of events. We conclude by stressing the need for studies that focus on what difference it makes, in terms of communicative behaviour, for intersubjective coordination to be managed by engagement systems as opposed to other, non-grammaticalised means.
  • Evans, N., & Levinson, S. C. (2009). The myth of language universals: Language diversity and its importance for cognitive science. Behavioral and Brain Sciences, 32(5), 429-492. doi:10.1017/S0140525X0999094X.

    Abstract

    Talk of linguistic universals has given cognitive scientists the impression that languages are all built to a common pattern. In fact, there are vanishingly few universals of language in the direct sense that all languages exhibit them. Instead, diversity can be found at almost every level of linguistic organization. This fundamentally changes the object of enquiry from a cognitive science perspective. This target article summarizes decades of cross-linguistic work by typologists and descriptive linguists, showing just how few and unprofound the universal characteristics of language are, once we honestly confront the diversity offered to us by the world's 6,000 to 8,000 languages. After surveying the various uses of “universal,” we illustrate the ways languages vary radically in sound, meaning, and syntactic organization, and then we examine in more detail the core grammatical machinery of recursion, constituency, and grammatical relations. Although there are significant recurrent patterns in organization, these are better explained as stable engineering solutions satisfying multiple design constraints, reflecting both cultural-historical factors and the constraints of human cognition.
  • Evans, N., & Levinson, S. C. (2009). With diversity in mind: Freeing the language sciences from universal grammar [Author's response]. Behavioral and Brain Sciences, 32(5), 472-484. doi:10.1017/S0140525X09990525.

    Abstract

    Our response takes advantage of the wide-ranging commentary to clarify some aspects of our original proposal and augment others. We argue against the generative critics of our coevolutionary program for the language sciences, defend the use of close-to-surface models as minimizing crosslinguistic data distortion, and stress the growing role of stochastic simulations in making generalized historical accounts testable. These methods lead the search for general principles away from idealized representations and towards selective processes. Putting cultural evolution central in understanding language diversity makes learning fundamental in the cognition of language: increasingly powerful models of general learning, paired with channelled caregiver input, seem set to manage language acquisition without recourse to any innate “universal grammar.” Understanding why human language has no clear parallels in the animal world requires a cross-species perspective: crucial ingredients are vocal learning (for which there are clear non-primate parallels) and an intentionattributing cognitive infrastructure that provides a universal base for language evolution. We conclude by situating linguistic diversity within a broader trend towards understanding human cognition through the study of variation in, for example, human genetics, neurocognition, and psycholinguistic processing.
  • Everett, D., & Majid, A. (2009). Adventures in the jungle of language. [Interview by Asifa Majid and Jon Sutton.]. The Psychologist, 22(4), 312-313. Retrieved from http://www.thepsychologist.org.uk/archive/archive_home.cfm?volumeID=22&editionID=174&ArticleID=1494.

    Abstract

    Daniel Everett has spent his career in the Amazon, challenging some fundamental ideas about language and thought. Asifa Majid and Jon Sutton pose the questions
  • Eysenck, M. W., & Van Berkum, J. J. A. (1992). Trait anxiety, defensiveness, and the structure of worry. Personality and Individual Differences, 13(12), 1285-1290. Retrieved from http://www.sciencedirect.com/science//journal/01918869.

    Abstract

    A principal components analysis of the ten scales of the Worry Questionnaire revealed the existence of major worry factors or domains of social evaluation and physical threat, and these factors were confirmed in a subsequent item analysis. Those high in trait anxiety had much higher scores on the Worry Questionnaire than those low in trait anxiety, especially on those scales relating to social evaluation. Scores on the Marlowe-Crowne Social Desirability Scale were negatively related to worry frequency. However, groups of low-anxious and repressed individucores did not differ in worry. It was concluded that worry, especals formed on the basis of their trait anxiety and social desirability sially in the social evaluation domain, is of fundamental importance to trait anxiety.
  • Fairs, A., Bögels, S., & Meyer, A. S. (2018). Dual-tasking with simple linguistic tasks: Evidence for serial processing. Acta Psychologica, 191, 131-148. doi:10.1016/j.actpsy.2018.09.006.

    Abstract

    In contrast to the large amount of dual-task research investigating the coordination of a linguistic and a nonlinguistic
    task, little research has investigated how two linguistic tasks are coordinated. However, such research
    would greatly contribute to our understanding of how interlocutors combine speech planning and listening in
    conversation. In three dual-task experiments we studied how participants coordinated the processing of an
    auditory stimulus (S1), which was either a syllable or a tone, with selecting a name for a picture (S2). Two SOAs,
    of 0 ms and 1000 ms, were used. To vary the time required for lexical selection and to determine when lexical
    selection took place, the pictures were presented with categorically related or unrelated distractor words. In
    Experiment 1 participants responded overtly to both stimuli. In Experiments 2 and 3, S1 was not responded to
    overtly, but determined how to respond to S2, by naming the picture or reading the distractor aloud. Experiment
    1 yielded additive effects of SOA and distractor type on the picture naming latencies. The presence of semantic
    interference at both SOAs indicated that lexical selection occurred after response selection for S1. With respect to
    the coordination of S1 and S2 processing, Experiments 2 and 3 yielded inconclusive results. In all experiments,
    syllables interfered more with picture naming than tones. This is likely because the syllables activated phonological
    representations also implicated in picture naming. The theoretical and methodological implications of the
    findings are discussed.

    Additional information

    1-s2.0-S0001691817305589-mmc1.pdf
  • Fedor, A., Pléh, C., Brauer, J., Caplan, D., Friederici, A. D., Gulyás, B., Hagoort, P., Nazir, T., & Singer, W. (2009). What are the brain mechanisms underlying syntactic operations? In D. Bickerton, & E. Szathmáry (Eds.), Biological foundations and origin of syntax (pp. 299-324). Cambridge, MA: MIT Press.

    Abstract

    This chapter summarizes the extensive discussions that took place during the Forum as well as the subsequent months thereafter. It assesses current understanding of the neuronal mechanisms that underlie syntactic structure and processing.... It is posited that to understand the neurobiology of syntax, it might be worthwhile to shift the balance from comprehension to syntactic encoding in language production
  • Fedorenko, E., Patel, A., Casasanto, D., Winawer, J., & Gibson, E. (2009). Structural integration in language and music: Evidence for a shared system. Memory & Cognition, 37, 1-9. doi:10.3758/MC.37.1.1.

    Abstract

    In this study, we investigate whether language and music share cognitive resources for structural processing. We report an experiment that used sung materials and manipulated linguistic complexity (subject-extracted relative clauses, object-extracted relative clauses) and musical complexity (in-key critical note, out-of-key critical note, auditory anomaly on the critical note involving a loudness increase). The auditory-anomaly manipulation was included in order to test whether the difference between in-key and out-of-key conditions might be due to any salient, unexpected acoustic event. The critical dependent measure involved comprehension accuracies to questions about the propositional content of the sentences asked at the end of each trial. The results revealed an interaction between linguistic and musical complexity such that the difference between the subject- and object-extracted relative clause conditions was larger in the out-of-key condition than in the in-key and auditory-anomaly conditions. These results provide evidence for an overlap in structural processing between language and music.
  • Lu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., Lowe, R., Yan, Q., Zhang, J., Vu, H., Ablaeva, J., Acosta-Rodriguez, V. A., Adams, D. M., Almunia, J., Aloysius, A., Ardehali, R., Arneson, A., Baker, C. S., Banks, G., Belov, K. and 168 moreLu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., Lowe, R., Yan, Q., Zhang, J., Vu, H., Ablaeva, J., Acosta-Rodriguez, V. A., Adams, D. M., Almunia, J., Aloysius, A., Ardehali, R., Arneson, A., Baker, C. S., Banks, G., Belov, K., Bennett, N. C., Black, P., Blumstein, D. T., Bors, E. K., Breeze, C. E., Brooke, R. T., Brown, J. L., Carter, G. G., Caulton, A., Cavin, J. M., Chakrabarti, L., Chatzistamou, I., Chen, H., Cheng, K., Chiavellini, P., Choi, O. W., Clarke, S. M., Cooper, L. N., Cossette, M. L., Day, J., DeYoung, J., DiRocco, S., Dold, C., Ehmke, E. E., Emmons, C. K., Emmrich, S., Erbay, E., Erlacher-Reid, C., Faulkes, C. G., Ferguson, S. H., Finno, C. J., Flower, J. E., Gaillard, J. M., Garde, E., Gerber, L., Gladyshev, V. N., Gorbunova, V., Goya, R. G., Grant, M. J., Green, C. B., Hales, E. N., Hanson, M. B., Hart, D. W., Haulena, M., Herrick, K., Hogan, A. N., Hogg, C. J., Hore, T. A., Huang, T., Izpisua Belmonte, J. C., Jasinska, A. J., Jones, G., Jourdain, E., Kashpur, O., Katcher, H., Katsumata, E., Kaza, V., Kiaris, H., Kobor, M. S., Kordowitzki, P., Koski, W. R., Krützen, M., Kwon, S. B., Larison, B., Lee, S. G., Lehmann, M., Lemaitre, J. F., Levine, A. J., Li, C., Li, X., Lim, A. R., Lin, D. T. S., Lindemann, D. M., Little, T. J., Macoretta, N., Maddox, D., Matkin, C. O., Mattison, J. A., McClure, M., Mergl, J., Meudt, J. J., Montano, G. A., Mozhui, K., Munshi-South, J., Naderi, A., Nagy, M., Narayan, P., Nathanielsz, P. W., Nguyen, N. B., Niehrs, C., O’Brien, J. K., O’Tierney Ginn, P., Odom, D. T., Ophir, A. G., Osborn, S., Ostrander, E. A., Parsons, K. M., Paul, K. C., Pellegrini, M., Peters, K. J., Pedersen, A. B., Petersen, J. L., Pietersen, D. W., Pinho, G. M., Plassais, J., Poganik, J. R., Prado, N. A., Reddy, P., Rey, B., Ritz, B. R., Robbins, J., Rodriguez, M., Russell, J., Rydkina, E., Sailer, L. L., Salmon, A. B., Sanghavi, A., Schachtschneider, K. M., Schmitt, D., Schmitt, T., Schomacher, L., Schook, L. B., Sears, K. E., Seifert, A. W., Seluanov, A., Shafer, A. B. A., Shanmuganayagam, D., Shindyapina, A. V., Simmons, M., Singh, K., Sinha, I., Slone, J., Snell, R. G., Soltanmaohammadi, E., Spangler, M. L., Spriggs, M. C., Staggs, L., Stedman, N., Steinman, K. J., Stewart, D. T., Sugrue, V. J., Szladovits, B., Takahashi, J. S., Takasugi, M., Teeling, E. C., Thompson, M. J., Van Bonn, B., Vernes, S. C., Villar, D., Vinters, H. V., Wallingford, M. C., Wang, N., Wayne, R. K., Wilkinson, G. S., Williams, C. K., Williams, R. W., Yang, X. W., Yao, M., Young, B. G., Zhang, B., Zhang, Z., Zhao, P., Zhao, Y., Zhou, W., Zimmermann, J., Ernst, J., Raj, K., & Horvath, S. (2023). Universal DNA methylation age across mammalian tissues. Nature aging, 3, 1144-1166. doi:10.1038/s43587-023-00462-6.

    Abstract

    Aging, often considered a result of random cellular damage, can be accurately estimated using DNA methylation profiles, the foundation of pan-tissue epigenetic clocks. Here, we demonstrate the development of universal pan-mammalian clocks, using 11,754 methylation arrays from our Mammalian Methylation Consortium, which encompass 59 tissue types across 185 mammalian species. These predictive models estimate mammalian tissue age with high accuracy (r > 0.96). Age deviations correlate with human mortality risk, mouse somatotropic axis mutations and caloric restriction. We identified specific cytosines with methylation levels that change with age across numerous species. These sites, highly enriched in polycomb repressive complex 2-binding locations, are near genes implicated in mammalian development, cancer, obesity and longevity. Our findings offer new evidence suggesting that aging is evolutionarily conserved and intertwined with developmental processes across all mammals.
  • Felemban, D., Verdonschot, R. G., Iwamoto, Y., Uchiyama, Y., Kakimoto, N., Kreiborg, S., & Murakami, S. (2018). A quantitative experimental phantom study on MRI image uniformity. Dentomaxillofacial Radiology, 47(6): 20180077. doi:10.1259/dmfr.20180077.

    Abstract

    Objectives: Our goal was to assess MR image uniformity by investigating aspects influencing said uniformity via a method laid out by the National Electrical Manufacturers Association (NEMA).
    Methods: Six metallic materials embedded in a glass phantom were scanned (i.e. Au, Ag, Al, Au-Ag-Pd alloy, Ti and Co-Cr alloy) as well as a reference image. Sequences included spin echo (SE) and gradient echo (GRE) scanned in three planes (i.e. axial, coronal, and sagittal). Moreover, three surface coil types (i.e. head and neck, Brain, and temporomandibular joint coils) and two image correction methods (i.e. surface coil intensity correction or SCIC, phased array uniformity enhancement or PURE) were employed to evaluate their effectiveness on image uniformity. Image uniformity was assessed using the National Electrical Manufacturers Association peak-deviation non-uniformity method.
    Results: Results showed that temporomandibular joint coils elicited the least uniform image and brain coils outperformed head and neck coils when metallic materials were present. Additionally, when metallic materials were present, spin echo outperformed gradient echo especially for Co-Cr (particularly in the axial plane). Furthermore, both SCIC and PURE improved image uniformity compared to uncorrected images, and SCIC slightly surpassed PURE when metallic metals were present. Lastly, Co-Cr elicited the least uniform image while other metallic materials generally showed similar patterns (i.e. no significant deviation from images without metallic metals).
    Conclusions: Overall, a quantitative understanding of the factors influencing MR image uniformity (e.g. coil type, imaging method, metal susceptibility, and post-hoc correction method) is advantageous to optimize image quality, assists clinical interpretation, and may result in improved medical and dental care.
  • Felker, E. R., Troncoso Ruiz, A., Ernestus, M., & Broersma, M. (2018). The ventriloquist paradigm: Studying speech processing in conversation with experimental control over phonetic input. The Journal of the Acoustical Society of America, 144(4), EL304-EL309. doi:10.1121/1.5063809.

    Abstract

    This article presents the ventriloquist paradigm, an innovative method for studying speech processing in dialogue whereby participants interact face-to-face with a confederate who, unbeknownst to them, communicates by playing pre-recorded speech. Results show that the paradigm convinces more participants that the speech is live than a setup without the face-to-face element, and it elicits more interactive conversation than a setup in which participants believe their partner is a computer. By reconciling the ecological validity of a conversational context with full experimental control over phonetic exposure, the paradigm offers a wealth of new possibilities for studying speech processing in interaction.
  • Ferré, G. (2023). Pragmatic gestures and prosody. In W. Pouw, J. Trujillo, H. R. Bosker, L. Drijvers, M. Hoetjes, J. Holler, S. Kadava, L. Van Maastricht, E. Mamus, & A. Ozyurek (Eds.), Gesture and Speech in Interaction (GeSpIn) Conference. doi:10.17617/2.3527215.

    Abstract

    The study presented here focuses on two pragmatic gestures:
    the hand flip (Ferré, 2011), a gesture of the Palm Up Open
    Hand/PUOH family (Müller, 2004) and the closed hand which
    can be considered as the opposite kind of movement to the open-
    ing of the hands present in the PUOH gesture. Whereas one of
    the functions of the hand flip has been described as presenting
    a new point in speech (Cienki, 2021), the closed hand gesture
    has not yet been described in the literature to the best of our
    knowledge. It can however be conceived of as having the oppo-
    site function of announcing the end of a point in discourse. The
    object of the present study is therefore to determine, with the
    study of prosodic features, if the two gestures are found in the
    same type of speech units and what their respective scope is.
    Drawing from a corpus of three TED Talks in French the
    prosodic characteristics of the speech that accompanies the two
    gestures will be examined. The hypothesis developed in the
    present paper is that their scope should be reflected in the
    prosody of accompanying speech, especially pitch key, tone,
    and relative pitch range. The prediction is that hand flips and
    closing hand gestures are expected to be located at the periph-
    ery of Intonation Phrases (IPs), Inter-Pausal Units (IPUs) or
    more conversational Turn Constructional Units (TCUs), and are
    likely to be co-occurrent with pauses in speech. But because of
    the natural slope of intonation in speech, the speech that accom-
    pany early gestures in Intonation Phrases should reveal different
    features from the speech at the end of intonational units. Tones
    should be different as well, considering the prosodic structure
    of spoken French.
  • Ferreira, F., & Huettig, F. (2023). Fast and slow language processing: A window into dual-process models of cognition. [Open Peer commentary on De Neys]. Behavioral and Brain Sciences, 46: e121. doi:10.1017/S0140525X22003041.

    Abstract

    Our understanding of dual-process models of cognition may benefit from a consideration of language processing, as language comprehension involves fast and slow processes analogous to those used for reasoning. More specifically, De Neys's criticisms of the exclusivity assumption and the fast-to-slow switch mechanism are consistent with findings from the literature on the construction and revision of linguistic interpretations.
  • Fisher, S. E., & Scharff, C. (2009). FOXP2 as a molecular window into speech and language [Review article]. Trends in Genetics, 25, 166-177. doi:10.1016/j.tig.2009.03.002.

    Abstract

    Rare mutations of the FOXP2 transcription factor gene cause a monogenic syndrome characterized by impaired speech development and linguistic deficits. Recent genomic investigations indicate that its downstream neural targets make broader impacts on common language impairments, bridging clinically distinct disorders. Moreover, the striking conservation of both FoxP2 sequence and neural expression in different vertebrates facilitates the use of animal models to study ancestral pathways that have been recruited towards human speech and language. Intriguingly, reduced FoxP2 dosage yields abnormal synaptic plasticity and impaired motor-skill learning in mice, and disrupts vocal learning in songbirds. Converging data indicate that Foxp2 is important for modulating the plasticity of relevant neural circuits. This body of research represents the first functional genetic forays into neural mechanisms contributing to human spoken language.
  • Fisher, S. E., Black, G. C. M., Lloyd, S. E., Wrong, O. M., Thakker, R. V., & Craig, I. W. (1994). Isolation and partial characterization of a chloride channel gene which is expressed in kidney and is a candidate for Dent's disease (an X-linked hereditary nephrolithiasis). Human Molecular Genetics, 3, 2053-2059.

    Abstract

    Dent's disease, an X-linked renal tubular disorder, is a form of Fanconi syndrome which is characterized by proteinuria, hypercalciuria, nephrocalcinosis, kidney stones and renal failure. Previous studies localised the gene responsible to Xp11.22, within a microdeletion involving the hypervariable locus DXS255. Further analysis using new probes which flank this locus indicate that the deletion is less than 515 kb. A 185 kb YAC containing DXS255 was used to screen a cDNA library from adult kidney in order to isolate coding sequences falling within the deleted region which may be implicated in the disease aetiology. We identified two clones which are evolutionarily conserved, and detect a 9.5 kb transcript which is expressed predominantly in the kidney. Sequence analysis of 780 bp of ORF from the clones suggests that the identified gene, termed hCIC-K2, encodes a new member of the CIC family of voltage-gated chloride channels. Genomic fragments detected by the cDNA clones are completely absent in patients who have an associated microdeletion. On the basis of the expression pattern, proposed function and deletion mapping, hCIC-K2 is a strong candidate for Dent's disease.
  • Fitz, H. (2009). Neural syntax. PhD Thesis, Universiteit van Amsterdam, Institute for Logic, Language, and Computation.

    Abstract

    Children learn their mother tongue spontaneously and effortlessly through communicative interaction with their environment; they do not have to be taught explicitly or learn how to learn first. The ambient language to which children are exposed, however, is highly variable and arguably deficient with regard to the learning target. Nonetheless, most normally developing children learn their native language rapidly and with ease. To explain this accomplishment, many theories of acquisition posit innate constraints on learning, or even a biological endowment for language which is specific to language. Usage-based theories, on the other hand, place more emphasis on the role of experience and domain-general learning mechanisms than on innate language-specific knowledge. But languages are lexically open and combinatorial in structure, so no amount of experience covers their expressivity. Usage-based theories therefore have to explain how children can generalize the properties of their linguistic input to an adult-like grammar. In this thesis I provide an explicit computational mechanism with which usage-based theories of language can be tested and evaluated. The focus of my work lies on complex syntax and the human ability to form sentences which express more than one proposition by means of relativization. This `capacity for recursion' is a hallmark of an adult grammar and, as some have argued, the human language faculty itself. The manuscript is organized as follows. In the second chapter, I give an overview of results that characterize the properties of neural networks as mathematical objects and review previous attempts at modelling the acquisition of complex syntax with such networks. The chapter introduces the conceptual landscape in which the current work is located. In the third chapter, I argue that the construction and use of meaning is essential in child language acquisition and adult processing. Neural network models need to incorporate this dimension of human linguistic behavior. I introduce the Dual-path model of sentence production and syntactic development which is able to represent semantics and learns from exposure to sentences paired with their meaning (cf. Chang et al. 2006). I explain the architecture of this model, motivate critical assumptions behind its design, and discuss existing research using this model. The fourth chapter describes and compares several extensions of the basic architecture to accommodate the processing of multi-clause utterances. These extensions are evaluated against computational desiderata, such as good learning and generalization performance and the parsimony of input representations. A single-best solution for encoding the meaning of complex sentences with restrictive relative clauses is identified, which forms the basis for all subsequent simulations. Chapter five analyzes the learning dynamics in more detail. I first examine the model's behavior for different relative clause types. Syntactic alternations prove to be particularly difficult to learn because they complicate the meaning-to-form mapping the model has to acquire. In the second part, I probe the internal representations the model has developed during learning. It is argued that the model acquires the argument structure of the construction types in its input language and represents the hierarchical organization of distinct multi-clause utterances. The juice of this thesis is contained in chapters six to eight. In chapter six, I test the Dual-path model's generalization capacities in a variety of tasks. I show that its syntactic representations are sufficiently transparent to allow structural generalization to novel complex utterances. Semantic similarities between novel and familiar sentence types play a critical role in this task. The Dual-path model also has a capacity for generalizing familiar words to novel slots in novel constructions (strong semantic systematicity). Moreover, I identify learning conditions under which the model displays recursive productivity. It is argued that the model's behavior is consistent with human behavior in that production accuracy degrades with depth of embedding, and right-branching is learned faster than center-embedding recursion. In chapter seven, I address the issue of learning complex polar interrogatives in the absence of positive exemplars in the input. I show that the Dual-path model can acquire the syntax of these questions from simpler and similar structures which are warranted in a child's linguistic environment. The model's errors closely match children's errors, and it is suggested that children might not require an innate learning bias to acquire auxiliary fronting. Since the model does not implement a traditional kind of language-specific universal grammar, these results are relevant to the poverty of the stimulus debate. English relative clause constructions give rise to similar performance orderings in adult processing and child language acquisition. This pattern matches the typological universal called the noun phrase accessibility hierarchy. I propose an input-based explanation of this data in chapter eight. The Dual-path model displays this ordering in syntactic development when exposed to plausible input distributions. But it is possible to manipulate and completely remove the ordering by varying properties of the input from which the model learns. This indicates, I argue, that patterns of interference and facilitation among input structures can explain the hierarchy when all structures are simultaneously learned and represented over a single set of connection weights. Finally, I draw conclusions from this work, address some unanswered questions, and give a brief outlook on how this research might be continued.

    Additional information

    http://dare.uva.nl/record/328271
  • Fitz, H., & Chang, F. (2009). Syntactic generalization in a connectionist model of sentence production. In J. Mayor, N. Ruh, & K. Plunkett (Eds.), Connectionist models of behaviour and cognition II: Proceedings of the 11th Neural Computation and Psychology Workshop (pp. 289-300). River Edge, NJ: World Scientific Publishing.

    Abstract

    We present a neural-symbolic learning model of sentence production which displays strong semantic systematicity and recursive productivity. Using this model, we provide evidence for the data-driven learnability of complex yes/no- questions.
  • Fiveash, A., Ferreri, L., Bouwer, F. L., Kösem, A., Moghimi, S., Ravignani, A., Keller, P. E., & Tillmann, B. (2023). Can rhythm-mediated reward boost learning, memory, and social connection? Perspectives for future research. Neuroscience and Biobehavioral Reviews, 149: 105153. doi:10.1016/j.neubiorev.2023.105153.

    Abstract

    Studies of rhythm processing and of reward have progressed separately, with little connection between the two. However, consistent links between rhythm and reward are beginning to surface, with research suggesting that synchronization to rhythm is rewarding, and that this rewarding element may in turn also boost this synchronization. The current mini review shows that the combined study of rhythm and reward can be beneficial to better understand their independent and combined roles across two central aspects of cognition: 1) learning and memory, and 2) social connection and interpersonal synchronization; which have so far been studied largely independently. From this basis, it is discussed how connections between rhythm and reward can be applied to learning and memory and social connection across different populations, taking into account individual differences, clinical populations, human development, and animal research. Future research will need to consider the rewarding nature of rhythm, and that rhythm can in turn boost reward, potentially enhancing other cognitive and social processes.
  • Flecken, M., & Von Stutterheim, C. (2018). Sprache und Kognition: Sprachvergleichende und lernersprachliche Untersuchungen zur Ereigniskonzeptualisierung. In S. Schimke, & H. Hopp (Eds.), Sprachverarbeitung im Zweitspracherwerb (pp. 325-356). Berlin: De Gruyter. doi:10.1515/9783110456356-014.
  • Floccia, C., Sambrook, T. D., Delle Luche, C., Kwok, R., Goslin, J., White, L., Cattani, A., Sullivan, E., Abbot-Smith, K., Krott, A., Mills, D., Rowland, C. F., Gervain, J., & Plunkett, K. (2018). Vocabulary of 2-year-olds learning learning English and an additional language: Norms and effects of linguistic distance. Hoboken: Wiley. doi:10.1111/mono.12348.
  • Floyd, S., Norcliffe, E., & San Roque, L. (Eds.). (2018). Egophoricity. Amsterdam: Benjamins.
  • Floyd, S. (2018). Egophoricity and argument structure in Cha'palaa. In S. Floyd, E. Norcliffe, & L. San Roque (Eds.), Egophoricity (pp. 269-304). Amsterdam: Benjamins.

    Abstract

    The Cha’palaa language of Ecuador (Barbacoan) features verbal morphology for marking knowledge-based categories that, in usage, show a variant of the cross-linguistically recurrent pattern of ‘egophoric distribution': specific forms associate with speakers in contrast to others in statements and with addressees in contrast to others in questions. These are not person markers, but rather are used by speakers to portray their involvement in states of affairs as active, agentive participants (ego) versus other types of involvement (non-ego). They interact with person and argument structure, but through pragmatic ‘person sensitivities’ rather than through grammatical agreement. Not only does this pattern appear in verbal morphology, it also can be observed in alternations of predicate construction types and case alignment, helping to show how egophoric marking is a pervasive element of Cha'palaa's linguistic system. This chapter gives a first account of egophoricity in Cha’palaa, beginning with a discussion of person sensitivity, egophoric distribution, and issues of flexibility of marking with respect to degree of volition or control. It then focuses on a set of intransitive experiencer (or ‘endopathic') predicates that refer to internal states which mark egophoric values for the undergoer role, not the actor role, showing ‘quirky’ accusative marking instead of nominative case. It concludes with a summary of how egophoricity in Cha'palaa interacts with issues of argument structure in comparison to a language with person agreement, here represented by examples from Cha’palaa’s neighbor Ecuadorian Highland Quechua.
  • Floyd, S. (2009). Nexos históricos, gramaticales y culturales de los números en cha'palaa [Historical, grammatical and cultural connections of Cha'palaa numerals]. In Proceedings of the Conference on Indigenous Languages of Latin America (CILLA) -IV.

    Abstract

    Los idiomas sudamericanas tienen una diversidad de sistemas numéricos, desde sistemas con solamente dos o tres términos en algunos idiomas amazónicos hasta sistemas con numerales extendiendo a miles. Una mirada al sistema del idioma cha’palaa de Ecuador demuestra rasgos de base-2, base-5, base-10 y base-20, ligados a diferentes etapas de cambio, desarrollo y contacto lingüístico. Conocer estas etapas nos permite proponer algunas correlaciones con lo que conocemos de la historia de contactos culturales en la región. The South American languages have diverse types of numeral systems, from systems of just two or three terms in some Amazonian languages to systems extending into the thousands. A look a the system of the Cha'palaa language of Ecuador demonstrates base-2, base-5, base-10 and base-20 features, linked to different stages of change, development and language contact. Learning about these stages permits up to propose some correlations between them and what we know about the history of cultural contact in the region.
  • Floyd, S., San Roque, L., & Majid, A. (2018). Smell is coded in grammar and frequent in discourse: Cha'palaa olfactory language in cross-linguistic perspective. Journal of Linguistic Anthropology, 28(2), 175-196. doi:10.1111/jola.12190.

    Abstract

    It has long been claimed that there is no lexical field of smell, and that smell is of too little validity to be expressed in grammar. We demonstrate both claims are false. The Cha'palaa language (Ecuador) has at least 15 abstract smell terms, each of which is formed using a type of classifier previously thought not to exist. Moreover, using conversational corpora we show that Cha'palaa speakers also talk about smell more than Imbabura Quechua and English speakers. Together, this shows how language and social interaction may jointly reflect distinct cultural orientations towards sensory experience in general and olfaction in particular.
  • Floyd, S., Rossi, G., Baranova, J., Blythe, J., Dingemanse, M., Kendrick, K. H., Zinken, J., & Enfield, N. J. (2018). Universals and cultural diversity in the expression of gratitude. Royal Society Open Science, 5: 180391. doi:10.1098/rsos.180391.

    Abstract

    Gratitude is argued to have evolved to motivate and maintain social reciprocity among people, and to be linked to a wide range of positive effects — social, psychological, and even physical. But is socially reciprocal behaviour dependent on the expression of gratitude, for example by saying "thank you" as in English? Current research has not included cross-cultural elements, and has tended to conflate gratitude as an emotion with gratitude as a linguistic practice, as might appear to be the case in English. Here we ask to what extent people actually express gratitude in different societies by focussing on episodes of everyday life where someone obtains a good, service, or support from another, and comparing these episodes across eight languages from five continents. What we find is that expressions of gratitude in these episodes are remarkably rare, suggesting that social reciprocity in everyday life relies on tacit understandings of people’s rights and duties surrounding mutual assistance and collaboration. At the same time, we also find minor cross-cultural variation, with slightly higher rates in Western European languages English and Italian, showing that universal tendencies of social reciprocity should not be conflated with more culturally variable practices of expressing gratitude. Our study complements previous experimental and culture-specific research on social reciprocity with a systematic comparison of audiovisual corpora of naturally occurring social interaction from different cultures from around the world.
  • Foley, W., & Van Valin Jr., R. D. (2009). Functional syntax and universal grammar (Repr.). Cambridge University Press.

    Abstract

    The key argument of this book, originally published in 1984, is that when human beings communicate with each other by means of a natural language they typically do not do so in simple sentences but rather in connected discourse - complex expressions made up of a number of clauses linked together in various ways. A necessary precondition for intelligible discourse is the speaker’s ability to signal the temporal relations between the events that are being discussed and to refer to the participants in those events in such a way that it is clear who is being talked about. A great deal of the grammatical machinery in a language is devoted to this task, and Functional Syntax and Universal Grammar explores how different grammatical systems accomplish it. This book is an important attempt to integrate the study of linguistic form with the study of language use and meaning. It will be of particular interest to field linguists and those concerned with typology and language universals, and also to anthropologists involved in the study of language function.
  • Folia, V., Forkstam, C., Hagoort, P., & Petersson, K. M. (2009). Language comprehension: The interplay between form and content. In N. Taatgen, & H. van Rijn (Eds.), Proceedings of the 31th Annual Conference of the Cognitive Science Society (pp. 1686-1691). Austin, TX: Cognitive Science Society.

    Abstract

    In a 2x2 event-related FMRI study we find support for the idea that the inferior frontal cortex, centered on Broca’s region and its homologue, is involved in constructive unification operations during the structure-building process in parsing for comprehension. Tentatively, we provide evidence for a role of the dorsolateral prefrontal cortex centered on BA 9/46 in the control component of the language system. Finally, the left temporo-parietal cortex, in the vicinity of Wernicke’s region, supports the interaction between the syntax of gender agreement and sentence-level semantics.
  • Forkel, S. J., & Catani, M. (2018). Lesion mapping in acute stroke aphasia and its implications for recovery. Neuropsychologia, 115, 88-100. doi:10.1016/j.neuropsychologia.2018.03.036.

    Abstract

    Patients with stroke offer a unique window into understanding human brain function. Mapping stroke lesions poses several challenges due to the complexity of the lesion anatomy and the mechanisms causing local and remote disruption on brain networks. In this prospective longitudinal study, we compare standard and advanced approaches to white matter lesion mapping applied to acute stroke patients with aphasia. Eighteen patients with acute left hemisphere stroke were recruited and scanned within two weeks from symptom onset. Aphasia assessment was performed at baseline and six-month follow-up. Structural and diffusion MRI contrasts indicated an area of maximum overlap in the anterior external/extreme capsule with diffusion images showing a larger overlap extending into posterior perisylvian regions. Anatomical predictors of recovery included damage to ipsilesional tracts (as shown by both structural and diffusion images) and contralesional tracts (as shown by diffusion images only). These findings indicate converging results from structural and diffusion lesion mapping methods but also clear differences between the two approaches in their ability to identify predictors of recovery outside the lesioned regions.
  • Forkel, S. J., & Catani, M. (2018). Structural Neuroimaging. In A. De Groot, & P. Hagoort (Eds.), Research Methods in Psycholinguistics and the Neurobiology of Language: A Practical Guide (pp. 288-308). Hoboken: Wiley. doi:10.1002/9781394259762.ch15.

    Abstract

    Structural imaging based on computerized tomography (CT) and magnetic resonance imaging (MRI) has progressively replaced traditional post‐mortem studies in the process of identifying the neuroanatomical basis of language. In the clinical setting, the information provided by structural imaging has been used to confirm the exact diagnosis and formulate an individualized treatment plan. In the research arena, neuroimaging has permitted to understand neuroanatomy at the individual and group level. The possibility to obtain quantitative measures of lesions has improved correlation analyses between severity of symptoms, lesion load, and lesion location. More recently, the development of structural imaging based on diffusion MRI has provided valid solutions to two major limitations of more conventional imaging. In stroke patients, diffusion can visualize early changes due to a stroke that are otherwise not detectable with more conventional structural imaging, with important implications for the clinical management of acute stroke patients. Beyond the sensitivity to early changes, diffusion imaging tractography presents the possibility of visualizing the trajectories of individual white matter pathways connecting distant regions. A pathway analysis based on tractography is offering a new perspective in neurolinguistics. First, it permits to formulate new anatomical models of language function in the healthy brain and allows to directly test these models in the human population without any reliance on animal models. Second, by defining the exact location of the damage to specific white matter connections we can understand the contribution of different mechanisms to the emergence of language deficits (e.g., cortical versus disconnection mechanisms). Finally, a better understanding of the anatomical variability of different language networks is helping to identify new anatomical predictors of language recovery. In this chapter we will focus on the principles of structural MRI and, in particular, diffusion imaging and tractography and present examples of how these methods have informed our understanding of variance in language performances in the healthy brain and language deficits in patient populations.
  • Forkstam, C., Jansson, A., Ingvar, M., & Petersson, K. M. (2009). Modality transfer of acquired structural regularities: A preference for an acoustic route. In N. Taatgen, & H. Van Rijn (Eds.), Proceedings of the 31th Annual Conference of the Cognitive Science Society. Austin, TX: Cognitive Science Society.

    Abstract

    Human implicit learning can be investigated with implicit artificial grammar learning, a simple model for aspects of natural language acquisition. In this paper we investigate the remaining effect of modality transfer in syntactic classification of an acquired grammatical sequence structure after implicit grammar acquisition. Participants practiced either on acoustically presented syllable sequences or visually presented consonant letter sequences. During classification we independently manipulated the statistical frequency-based and rule-based characteristics of the classification stimuli. Participants performed reliably above chance on the within modality classification task although more so for those working on syllable sequence acquisition. These subjects were also the only group that kept a significant performance level in transfer classification. We speculate that this finding is of particular relevance in consideration of an ecological validity in the input signal in the use of artificial grammar learning and in language learning paradigms at large.
  • Frances, C., Costa, A., & Baus, C. (2018). On the effects of regional accents on memory and credibility. Acta Psychologica, 186, 63-70. doi:10.1016/j.actpsy.2018.04.003.

    Abstract

    The information we obtain from how speakers sound—for example their accent—affects how we interpret the messages they convey. A clear example is foreign accented speech, where reduced intelligibility and speaker's social categorization (out-group member) affect memory and the credibility of the message (e.g., less trustworthiness). In the present study, we go one step further and ask whether evaluations of messages are also affected by regional accents—accents from a different region than the listener. In the current study, we report results from three experiments on immediate memory recognition and immediate credibility assessments as well as the illusory truth effect. These revealed no differences between messages conveyed in local—from the same region as the participant—and regional accents—from native speakers of a different country than the participants. Our results suggest that when the accent of a speaker has high intelligibility, social categorization by accent does not seem to negatively affect how we treat the speakers' messages.
  • Frances, C., Costa, A., & Baus, C. (2018). On the effects of regional accents on memory and credibility. Acta Psychologica, 186, 63-70. doi:10.1016/j.actpsy.2018.04.003.

    Abstract

    The information we obtain from how speakers sound—for example their accent—affects how we interpret the
    messages they convey. A clear example is foreign accented speech, where reduced intelligibility and speaker's
    social categorization (out-group member) affect memory and the credibility of the message (e.g., less trust-
    worthiness). In the present study, we go one step further and ask whether evaluations of messages are also
    affected by regional accents—accents from a different region than the listener. In the current study, we report
    results from three experiments on immediate memory recognition and immediate credibility assessments as well
    as the illusory truth effect. These revealed no differences between messages conveyed in local—from the same
    region as the participant—and regional accents—from native speakers of a different country than the partici-
    pants. Our results suggest that when the accent of a speaker has high intelligibility, social categorization by
    accent does not seem to negatively affect how we treat the speakers' messages.
  • Francisco, A. A., Takashima, A., McQueen, J. M., Van den Bunt, M., Jesse, A., & Groen, M. A. (2018). Adult dyslexic readers benefit less from visual input during audiovisual speech processing: fMRI evidence. Neuropsychologia, 117, 454-471. doi:10.1016/j.neuropsychologia.2018.07.009.

    Abstract

    The aim of the present fMRI study was to investigate whether typical and dyslexic adult readers differed in the neural correlates of audiovisual speech processing. We tested for Blood Oxygen-Level Dependent (BOLD) activity differences between these two groups in a 1-back task, as they processed written (word, illegal consonant strings) and spoken (auditory, visual and audiovisual) stimuli. When processing written stimuli, dyslexic readers showed reduced activity in the supramarginal gyrus, a region suggested to play an important role in phonological processing, but only when they processed strings of consonants, not when they read words. During the speech perception tasks, dyslexic readers were only slower than typical readers in their behavioral responses in the visual speech condition. Additionally, dyslexic readers presented reduced neural activation in the auditory, the visual, and the audiovisual speech conditions. The groups also differed in terms of superadditivity, with dyslexic readers showing decreased neural activation in the regions of interest. An additional analysis focusing on vision-related processing during the audiovisual condition showed diminished activation for the dyslexic readers in a fusiform gyrus cluster. Our results thus suggest that there are differences in audiovisual speech processing between dyslexic and normal readers. These differences might be explained by difficulties in processing the unisensory components of audiovisual speech, more specifically, dyslexic readers may benefit less from visual information during audiovisual speech processing than typical readers. Given that visual speech processing supports the development of phonological skills fundamental in reading, differences in processing of visual speech could contribute to differences in reading ability between typical and dyslexic readers.
  • Francks, C. (2009). 13 - LRRTM1: A maternally suppressed genetic effect on handedness and schizophrenia. In I. E. C. Sommer, & R. S. Kahn (Eds.), Cerebral lateralization and psychosis (pp. 181-196). Cambridge: Cambridge University Press.

    Abstract

    The molecular, developmental, and evolutionary bases of human brain asymmetry are almost completely unknown. Genetic linkage and association mapping have pin-pointed a gene called LRRTM1 (leucine-rich repeat transmembrane neuronal 1) that may contribute to variability in human handedness. Here I describe how LRRTM1's involvement in handedness was discovered, and also the latest knowledge of its functions in brain development and disease. The association of LRRTM1 with handedness was derived entirely from the paternally inherited gene, and follow-up analysis of gene expression confirmed that LRRTM1 is one of a small number of genes that are imprinted in the human genome, for which the maternally inherited copy is suppressed. The same variation at LRRTM1 that was associated paternally with mixed-/left-handedness was also over-transmitted paternally to schizophrenic patients in a large family study.
    LRRTM1 is expressed in specific regions of the developing and adult forebrain by post-mitotic neurons, and the protein may be involved in axonal trafficking. Thus LRRTM1 has a probable role in neurodevelopment, and its association with handedness suggests that one of its functions may be in establishing or consolidating human brain asymmetry.
    LRRTM1 is the first gene for which allelic variation has been associated with human handedness. The genetic data also suggest indirectly that the epigenetic regulation of this gene may yet prove more important than DNA sequence variation for influencing brain development and disease.
    Intriguingly, the parent-of-origin activity of LRRTM1 suggests that men and women have had conflicting interests in relation to the outcome of lateralized brain development in their offspring.
  • Francks, C. (2009). Understanding the genetics of behavioural and psychiatric traits will only be achieved through a realistic assessment of their complexity. Laterality: Asymmetries of Body, Brain and Cognition, 14(1), 11-16. doi:10.1080/13576500802536439.

    Abstract

    Francks et al. (2007) performed a recent study in which the first putative genetic effect on human handedness was identified (the imprinted locus LRRTM1 on human chromosome 2). In this issue of Laterality, Tim Crow and colleagues present a critique of that study. The present paper presents a personal response to that critique which argues that Francks et al. (2007) published a substantial body of evidence implicating LRRTM1 in handedness and schizophrenia. Progress will now be achieved by others trying to validate, refute, or extend those findings, rather than by further armchair discussion.
  • Frank, S. L., & Yang, J. (2018). Lexical representation explains cortical entrainment during speech comprehension. PLoS One, 13(5): e0197304. doi:10.1371/journal.pone.0197304.

    Abstract

    Results from a recent neuroimaging study on spoken sentence comprehension have been interpreted as evidence for cortical entrainment to hierarchical syntactic structure. We present a simple computational model that predicts the power spectra from this study, even
    though the model's linguistic knowledge is restricted to the lexical level, and word-level representations are not combined into higher-level units (phrases or sentences). Hence, the
    cortical entrainment results can also be explained from the lexical properties of the stimuli, without recourse to hierarchical syntax.
  • Franken, M. K. (2018). Listening for speaking: Investigations of the relationship between speech perception and production. PhD Thesis, Radboud University, Nijmegen.

    Abstract

    Speaking and listening are complex tasks that we perform on a daily basis, almost without conscious effort. Interestingly, speaking almost never occurs without listening: whenever we speak, we at least hear our own speech. The research in this thesis is concerned with how the perception of our own speech influences our speaking behavior. We show that unconsciously, we actively monitor this auditory feedback of our own speech. This way, we can efficiently take action and adapt articulation when an error occurs and auditory feedback does not correspond to our expectation. Processing the auditory feedback of our speech does not, however, automatically affect speech production. It is subject to a number of constraints. For example, we do not just track auditory feedback, but also its consistency. If auditory feedback is more consistent over time, it has a stronger influence on speech production. In addition, we investigated how auditory feedback during speech is processed in the brain, using magnetoencephalography (MEG). The results suggest the involvement of a broad cortical network including both auditory and motor-related regions. This is consistent with the view that the auditory center of the brain is involved in comparing auditory feedback to our expectation of auditory feedback. If this comparison yields a mismatch, motor-related regions of the brain can be recruited to alter the ongoing articulations.

    Additional information

    full text via Radboud Repository
  • Franken, M. K., Acheson, D. J., McQueen, J. M., Hagoort, P., & Eisner, F. (2018). Opposing and following responses in sensorimotor speech control: Why responses go both ways. Psychonomic Bulletin & Review, 25(4), 1458-1467. doi:10.3758/s13423-018-1494-x.

    Abstract

    When talking, speakers continuously monitor and use the auditory feedback of their own voice to control and inform speech production processes. When speakers are provided with auditory feedback that is perturbed in real time, most of them compensate for this by opposing the feedback perturbation. But some speakers follow the perturbation. In the current study, we investigated whether the state of the speech production system at perturbation onset may determine what type of response (opposing or following) is given. The results suggest that whether a perturbation-related response is opposing or following depends on ongoing fluctuations of the production system: It initially responds by doing the opposite of what it was doing. This effect and the non-trivial proportion of following responses suggest that current production models are inadequate: They need to account for why responses to unexpected sensory feedback depend on the production-system’s state at the time of perturbation.
  • Franken, M. K., Eisner, F., Acheson, D. J., McQueen, J. M., Hagoort, P., & Schoffelen, J.-M. (2018). Self-monitoring in the cerebral cortex: Neural responses to pitch-perturbed auditory feedback during speech production. NeuroImage, 179, 326-336. doi:10.1016/j.neuroimage.2018.06.061.

    Abstract

    Speaking is a complex motor skill which requires near instantaneous integration of sensory and motor-related information. Current theory hypothesizes a complex interplay between motor and auditory processes during speech production, involving the online comparison of the speech output with an internally generated forward model. To examine the neural correlates of this intricate interplay between sensory and motor processes, the current study uses altered auditory feedback (AAF) in combination with magnetoencephalography (MEG). Participants vocalized the vowel/e/and heard auditory feedback that was temporarily pitch-shifted by only 25 cents, while neural activity was recorded with MEG. As a control condition, participants also heard the recordings of the same auditory feedback that they heard in the first half of the experiment, now without vocalizing. The participants were not aware of any perturbation of the auditory feedback. We found auditory cortical areas responded more strongly to the pitch shifts during vocalization. In addition, auditory feedback perturbation resulted in spectral power increases in the θ and lower β bands, predominantly in sensorimotor areas. These results are in line with current models of speech production, suggesting auditory cortical areas are involved in an active comparison between a forward model's prediction and the actual sensory input. Subsequently, these areas interact with motor areas to generate a motor response. Furthermore, the results suggest that θ and β power increases support auditory-motor interaction, motor error detection and/or sensory prediction processing.
  • Frauenfelder, U. H., & Cutler, A. (1985). Preface. Linguistics, 23(5). doi:10.1515/ling.1985.23.5.657.
  • Friederici, A. D., & Levelt, W. J. M. (1986). Cognitive processes of spatial coordinate assignment: On weighting perceptual cues. Naturwissenschaften, 73, 455-458.
  • Friedlaender, J., Hunley, K., Dunn, M., Terrill, A., Lindström, E., Reesink, G., & Friedlaender, F. (2009). Linguistics more robust than genetics [Letter to the editor]. Science, 324, 464-465. doi:10.1126/science.324_464c.
  • Galke, L., Gerstenkorn, G., & Scherp, A. (2018). A case study of closed-domain response suggestion with limited training data. In M. Elloumi, M. Granitzer, A. Hameurlain, C. Seifert, B. Stein, A. Min Tjoa, & R. Wagner (Eds.), Database and Expert Systems Applications: DEXA 2018 International Workshops, BDMICS, BIOKDD, and TIR, Regensburg, Germany, September 3–6, 2018, Proceedings (pp. 218-229). Cham, Switzerland: Springer.

    Abstract

    We analyze the problem of response suggestion in a closed domain along a real-world scenario of a digital library. We present a text-processing pipeline to generate question-answer pairs from chat transcripts. On this limited amount of training data, we compare retrieval-based, conditioned-generation, and dedicated representation learning approaches for response suggestion. Our results show that retrieval-based methods that strive to find similar, known contexts are preferable over parametric approaches from the conditioned-generation family, when the training data is limited. We, however, identify a specific representation learning approach that is competitive to the retrieval-based approaches despite the training data limitation.
  • Galke, L., Mai, F., & Vagliano, I. (2018). Multi-modal adversarial autoencoders for recommendations of citations and subject labels. In T. Mitrovic, J. Zhang, L. Chen, & D. Chin (Eds.), UMAP '18: Proceedings of the 26th Conference on User Modeling, Adaptation and Personalization (pp. 197-205). New York: ACM. doi:10.1145/3209219.3209236.

    Abstract

    We present multi-modal adversarial autoencoders for recommendation and evaluate them on two different tasks: citation recommendation and subject label recommendation. We analyze the effects of adversarial regularization, sparsity, and different input modalities. By conducting 408 experiments, we show that adversarial regularization consistently improves the performance of autoencoders for recommendation. We demonstrate, however, that the two tasks differ in the semantics of item co-occurrence in the sense that item co-occurrence resembles relatedness in case of citations, yet implies diversity in case of subject labels. Our results reveal that supplying the partial item set as input is only helpful, when item co-occurrence resembles relatedness. When facing a new recommendation task it is therefore crucial to consider the semantics of item co-occurrence for the choice of an appropriate model.
  • Galke, L., Vagliano, I., Franke, B., Zielke, T., & Scherp, A. (2023). Lifelong learning on evolving graphs under the constraints of imbalanced classes and new classes. Neural networks, 164, 156-176. doi:10.1016/j.neunet.2023.04.022.

    Abstract

    Lifelong graph learning deals with the problem of continually adapting graph neural network (GNN) models to changes in evolving graphs. We address two critical challenges of lifelong graph learning in this work: dealing with new classes and tackling imbalanced class distributions. The combination of these two challenges is particularly relevant since newly emerging classes typically resemble only a tiny fraction of the data, adding to the already skewed class distribution. We make several contributions: First, we show that the amount of unlabeled data does not influence the results, which is an essential prerequisite for lifelong learning on a sequence of tasks. Second, we experiment with different label rates and show that our methods can perform well with only a tiny fraction of annotated nodes. Third, we propose the gDOC method to detect new classes under the constraint of having an imbalanced class distribution. The critical ingredient is a weighted binary cross-entropy loss function to account for the class imbalance. Moreover, we demonstrate combinations of gDOC with various base GNN models such as GraphSAGE, Simplified Graph Convolution, and Graph Attention Networks. Lastly, our k-neighborhood time difference measure provably normalizes the temporal changes across different graph datasets. With extensive experimentation, we find that the proposed gDOC method is consistently better than a naive adaption of DOC to graphs. Specifically, in experiments using the smallest history size, the out-of-distribution detection score of gDOC is 0.09 compared to 0.01 for DOC. Furthermore, gDOC achieves an Open-F1 score, a combined measure of in-distribution classification and out-of-distribution detection, of 0.33 compared to 0.25 of DOC (32% increase).

    Additional information

    Link to preprint version code datasets
  • Gamba, M., Raimondi, T., De Gregorio, C., Valente, D., Carugati, F., Cristiano, W., Ferrario, V., Torti, V., Favaro, L., Friard, O., Giacoma, C., & Ravignani, A. (2023). Rhythmic categories across primate vocal displays. In A. Astolfi, F. Asdrubali, & L. Shtrepi (Eds.), Proceedings of the 10th Convention of the European Acoustics Association Forum Acusticum 2023 (pp. 3971-3974). Torino: European Acoustics Association.

    Abstract

    The last few years have revealed that several species may share the building blocks of Musicality with humans. The recognition of these building blocks (e.g., rhythm, frequency variation) was a necessary impetus for a new round of studies investigating rhythmic variation in animal vocal displays. Singing primates are a small group of primate species that produce modulated songs ranging from tens to thousands of vocal units. Previous studies showed that the indri, the only singing lemur, is currently the only known species that perform duet and choruses showing multiple rhythmic categories, as seen in human music. Rhythmic categories occur when temporal intervals between note onsets are not uniformly distributed, and rhythms with a small integer ratio between these intervals are typical of human music. Besides indris, white-handed gibbons and three crested gibbon species showed a prominent rhythmic category corresponding to a single small integer ratio, isochrony. This study reviews previous evidence on the co-occurrence of rhythmic categories in primates and focuses on the prospects for a comparative, multimodal study of rhythmicity in this clade.
  • Ganushchak, L. Y., & Schiller, N. O. (2009). Speaking in one’s second language under time pressure: An ERP study on verbal self-monitoring in German-Dutch bilinguals. Psychophysiology, 46, 410-419. doi:10.1111/j.1469-8986.2008.00774.x.

    Abstract

    This study addresses how verbal self-monitoring and the Error-Related Negativity (ERN) are affected by time pressure
    when a task is performed in a second language as opposed to performance in the native language. German–Dutch
    bilinguals were required to perform a phoneme-monitoring task in Dutch with and without a time pressure manipulation.
    We obtained an ERN following verbal errors that showed an atypical increase in amplitude under time
    pressure. This finding is taken to suggest that under time pressure participants had more interference from their native
    language, which in turn led to a greater response conflict and thus enhancement of the amplitude of the ERN. This
    result demonstrates once more that the ERN is sensitive to psycholinguistic manipulations and suggests that the
    functioning of the verbal self-monitoring systemduring speaking is comparable to other performance monitoring, such
    as action monitoring.
  • Gao, X., & Jiang, T. (2018). Sensory constraints on perceptual simulation during sentence reading. Journal of Experimental Psychology: Human Perception and Performance, 44(6), 848-855. doi:10.1037/xhp0000475.

    Abstract

    Resource-constrained models of language processing predict that perceptual simulation during language understanding would be compromised by sensory limitations (such as reading text in unfamiliar/difficult font), whereas strong versions of embodied theories of language would predict that simulating perceptual symbols in language would not be impaired even under sensory-constrained situations. In 2 experiments, sensory decoding difficulty was manipulated by using easy and hard fonts to study perceptual simulation during sentence reading (Zwaan, Stanfield, & Yaxley, 2002). Results indicated that simulating perceptual symbols in language was not compromised by surface-form decoding challenges such as difficult font, suggesting relative resilience of embodied language processing in the face of certain sensory constraints. Further implications for learning from text and individual differences in language processing will be discussed
  • Garcia, R., Dery, J. E., Roeser, J., & Höhle, B. (2018). Word order preferences of Tagalog-speaking adults and children. First Language, 38(6), 617-640. doi:10.1177/0142723718790317.

    Abstract

    This article investigates the word order preferences of Tagalog-speaking adults and five- and seven-year-old children. The participants were asked to complete sentences to describe pictures depicting actions between two animate entities. Adults preferred agent-initial constructions in the patient voice but not in the agent voice, while the children produced mainly agent-initial constructions regardless of voice. This agent-initial preference, despite the lack of a close link between the agent and the subject in Tagalog, shows that this word order preference is not merely syntactically-driven (subject-initial preference). Additionally, the children’s agent-initial preference in the agent voice, contrary to the adults’ lack of preference, shows that children do not respect the subject-last principle of ordering Tagalog full noun phrases. These results suggest that language-specific optional features like a subject-last principle take longer to be acquired.
  • Garcia, N., Lenkiewicz, P., Freire, M., & Monteiro, P. (2009). A new architecture for optical burst switching networks based on cooperative control. In Proceeding of the 8th IEEE International Symposium on Network Computing and Applications (IEEE NCA09) (pp. 310-313).

    Abstract

    This paper presents a new architecture for optical burst switched networks where the control plane of the network functions in a cooperative manner. Each node interprets the data conveyed by the control packet and forwards it to the next nodes, making the control plane of the network distribute the relevant information to all the nodes in the network. A cooperation transmission tree is used, thus allowing all the nodes to store the information related to the traffic management in the network, and enabling better network resource planning at each node. A model of this network architecture is proposed, and its performance is evaluated.
  • Garcia, R., Roeser, J., & Kidd, E. (2023). Finding your voice: Voice-specific effects in Tagalog reveal the limits of word order priming. Cognition, 236: 105424. doi:10.1016/j.cognition.2023.105424.

    Abstract

    The current research investigated structural priming in Tagalog, a symmetrical voice language containing rich verbal morphology that results in changes in mapping between syntactic positions and thematic roles. This grammatically rare feature, which results in multiple transitive structures that are balanced in terms of the grammatical status of their arguments, provides the opportunity to test whether word order priming is sensitive to the voice morphology of the verb. In three sentence priming experiments (Ns = 64), we manipulated whether the target-verb prompt carried the same voice as the verb in the prime sentence. In all experiments, priming occurred only when the prime and target had the same voice morphology. Additionally, we found that the strength of word order priming depends on voice: stronger priming effects were found for the voice morpheme associated with a more flexible word order. The findings are consistent with learning-based accounts where language-specific representations for syntax emerge across developmental time. We discuss the implications of these results in the context of Tagalog's grammar. The results reveal the value of crosslinguistic data for theory-testing, and the value of structural priming in determining the representational nature of linguistic structure.

    Additional information

    data and analysis scripts
  • Garcia, R., Albert, H. M. D., Bondoc, I. P., & Marzan, J. C. B. (2023). Collecting language acquisition data from understudied urban communities: A reply to Cristia et al. Journal of Child Language, 50(3), 522-526. doi:10.1017/S0305000922000721.

    Abstract

    In the target article, Cristia, Foushee, Aravena-Bravo, Cychosz, Scaff, and Casillas (2022) convincingly show the need to broaden the current language acquisition research base, not only in linguistic diversity, but also in terms of regions and cultural groups studied. In conducting acquisition research in understudied populations, such as in rural settings, the authors highlight the importance of using a multi-method approach. They present the challenges in adapting these methods to new settings and offer possible ways to promote this type of research. In this commentary, we extend the discussion to understudied urban communities, as we encounter several of the concerns raised in Cristia et al. when collecting observational and experimental language acquisition data from Metro Manila, Philippines. We first describe the community we study, the challenges and modifications needed for conducting research in this setting, and end with a discussion of possible strategies to promote research in communities with understudied populations.
  • Garrido Rodriguez, G., Norcliffe, E., Brown, P., Huettig, F., & Levinson, S. C. (2023). Anticipatory processing in a verb-initial Mayan language: Eye-tracking evidence during sentence comprehension in Tseltal. Cognitive Science, 47(1): e13292. doi:10.1111/cogs.13219.

    Abstract

    We present a visual world eye-tracking study on Tseltal (a Mayan language) and investigate whether verbal information can be used to anticipate an upcoming referent. Basic word order in transitive sentences in Tseltal is Verb-Object-Subject (VOS). The verb is usually encountered first, making argument structure and syntactic information available at the outset, which should facilitate anticipation of the post-verbal arguments. Tseltal speakers listened to verb-initial sentences with either an object-predictive verb (e.g., ‘eat’) or a general verb (e.g., ‘look for’) (e.g., “Ya slo’/sle ta stukel on te kereme”, Is eating/is looking (for) by himself the avocado the boy/ “The boy is eating/is looking (for) an avocado by himself”) while seeing a visual display showing one potential referent (e.g., avocado) and three distractors (e.g., bag, toy car, coffee grinder). We manipulated verb type (predictive vs. general) and recorded participants' eye-movements while they listened and inspected the visual scene. Participants’ fixations to the target referent were analysed using multilevel logistic regression models. Shortly after hearing the predictive verb, participants fixated the target object before it was mentioned. In contrast, when the verb was general, fixations to the target only started to increase once the object was heard. Our results suggest that Tseltal hearers pre-activate semantic features of the grammatical object prior to its linguistic expression. This provides evidence from a verb-initial language for online incremental semantic interpretation and anticipatory processing during language comprehension. These processes are comparable to the ones identified in subject-initial languages, which is consistent with the notion that different languages follow similar universal processing principles.
  • Garrido, L., Eisner, F., McGettigan, C., Stewart, L., Sauter, D., Hanley, J. R., Schweinberger, S. R., Warren, J. D., & Duchaine, B. (2009). Developmental phonagnosia: A selective deficit of vocal identity recognition. Neuropsychologia, 47(1), 123-131. doi:10.1016/j.neuropsychologia.2008.08.003.

    Abstract

    Phonagnosia, the inability to recognize familiar voices, has been studied in brain-damaged patients but no cases due to developmental problems have been reported. Here we describe the case of KH, a 60-year-old active professional woman who reports that she has always experienced severe voice recognition difficulties. Her hearing abilities are normal, and an MRI scan showed no evidence of brain damage in regions associated with voice or auditory perception. To better understand her condition and to assess models of voice and high-level auditory processing, we tested KH on behavioural tasks measuring voice recognition, recognition of vocal emotions, face recognition, speech perception, and processing of environmental sounds and music. KH was impaired on tasks requiring the recognition of famous voices and the learning and recognition of new voices. In contrast, she performed well on nearly all other tasks. Her case is the first report of developmental phonagnosia, and the results suggest that the recognition of a speaker’s vocal identity depends on separable mechanisms from those used to recognize other information from the voice or non-vocal auditory stimuli.
  • Gazendam, L., Wartena, C., Malaise, V., Schreiber, G., De Jong, A., & Brugman, H. (2009). Automatic annotation suggestions for audiovisual archives: Evaluation aspects. Interdisciplinary Science Reviews, 34(2/3), 172-188. doi:10.1179/174327909X441090.

    Abstract

    In the context of large and ever growing archives, generating annotation suggestions automatically from textual resources related to the documents to be archived is an interesting option in theory. It could save a lot of work in the time consuming and expensive task of manual annotation and it could help cataloguers attain a higher inter-annotator agreement. However, some questions arise in practice: what is the quality of the automatically produced annotations? How do they compare with manual annotations and with the requirements for annotation that were defined in the archive? If different from the manual annotations, are the automatic annotations wrong? In the CHOICE project, partially hosted at the Netherlands Institute for Sound and Vision, the Dutch public archive for audiovisual broadcasts, we automatically generate annotation suggestions for cataloguers. In this paper, we define three types of evaluation of these annotation suggestions: (1) a classic and strict evaluation measure expressing the overlap between automatically generated keywords and the manual annotations, (2) a loosened evaluation measure for which semantically very similar annotations are also considered as relevant matches, and (3) an in-use evaluation of the usefulness of manual versus automatic annotations in the context of serendipitous browsing. During serendipitous browsing, the annotations (manual or automatic) are used to retrieve and visualize semantically related documents.
  • Gentner, D., & Bowerman, M. (2009). Why some spatial semantic categories are harder to learn than others: The typological prevalence hypothesis. In J. Guo, E. Lieven, N. Budwig, S. Ervin-Tripp, K. Nakamura, & S. Ozcaliskan (Eds.), Crosslinguistic approaches to the psychology of language: Research in the tradition of Dan Isaac Slobin (pp. 465-480). New York: Psychology Press.
  • Gerrits, F., Senft, G., & Wisse, D. (2018). Bomiyoyeva and bomduvadoya: Two rare structures on the Trobriand Islands exclusively reserved for Tabalu chiefs. Anthropos, 113, 93-113. doi:10.5771/0257-9774-2018-1-93.

    Abstract

    This article presents information about two so far undescribed buildings made by the Trobriand Islanders, the bomiyoyeva and the bomduvadova. These structures are connected to the highest-ranking chiefs living in Labai and Omarakana on Kiriwina Island. They highlight the power and eminence of these chiefs. After a brief report on the history of this project, the structure of the two houses, their function, and their use is described and information on their construction and their mythical background is provided. Finally, everyday as well as ritual, social, and political functions of both buildings are discussed. [Melanesia, Trobriand Islands, Tabalu chiefs, yams houses, bomiyoyeva, bomduvadova, authoritative capacities]

    Additional information

    link to journal
  • Giering, E., Tinbergen, M., & Verbunt, A. (2009). Research Report 2007 | 2008. Nijmegen: Max Planck Institute for Psycholinguistics.
  • Giglio, L. (2023). Speaking in the Brain: How the brain produces and understands language. PhD Thesis, Radboud University Nijmegen, Nijmegen.
  • Gingras, B., Honing, H., Peretz, I., Trainor, L. J., & Fisher, S. E. (2018). Defining the biological bases of individual differences in musicality. In H. Honing (Ed.), The origins of musicality (pp. 221-250). Cambridge, MA: MIT Press.
  • Gisladottir, R. S., Bögels, S., & Levinson, S. C. (2018). Oscillatory brain responses reflect anticipation during comprehension of speech acts in spoken dialogue. Frontiers in Human Neuroscience, 12: 34. doi:10.3389/fnhum.2018.00034.

    Abstract

    Everyday conversation requires listeners to quickly recognize verbal actions, so-called speech acts, from the underspecified linguistic code and prepare a relevant response within the tight time constraints of turn-taking. The goal of this study was to determine the time-course of speech act recognition by investigating oscillatory EEG activity during comprehension of spoken dialogue. Participants listened to short, spoken dialogues with target utterances that delivered three distinct speech acts (Answers, Declinations, Pre-offers). The targets were identical across conditions at lexico-syntactic and phonetic/prosodic levels but differed in the pragmatic interpretation of the speech act performed. Speech act comprehension was associated with reduced power in the alpha/beta bands just prior to Declination speech acts, relative to Answers and Pre-offers. In addition, we observed reduced power in the theta band during the beginning of Declinations, relative to Answers. Based on the role of alpha and beta desynchronization in anticipatory processes, the results are taken to indicate that anticipation plays a role in speech act recognition. Anticipation of speech acts could be critical for efficient turn-taking, allowing interactants to quickly recognize speech acts and respond within the tight time frame characteristic of conversation. The results show that anticipatory processes can be triggered by the characteristics of the interaction, including the speech act type.

    Additional information

    data sheet 1.pdf
  • Glaser, B., & Holmans, P. (2009). Comparison of methods for combining case-control and family-based association studies. Human Heredity, 68(2), 106-116. doi:10.1159/000212503.

    Abstract

    OBJECTIVES: Combining the analysis of family-based samples with unrelated individuals can enhance the power of genetic association studies. Various combined analysis techniques have been recently developed; as yet, there have been no comparisons of their power, or robustness to confounding factors. We investigated empirically the power of up to six combined methods using simulated samples of trios and unrelated cases/controls (TDTCC), trios and unrelated controls (TDTC), and affected sibpairs with parents and unrelated cases/controls (ASPFCC). METHODS: We simulated multiplicative, dominant and recessive models with varying risk parameters in single samples. Additionally, we studied false-positive rates and investigated, if possible, the coverage of the true genetic effect (TDTCC). RESULTS/CONCLUSIONS: Under the TDTCC design, we identified four approaches with equivalent power and false-positive rates. Combined statistics were more powerful than single-sample statistics or a pooled chi(2)-statistic when risk parameters were similar in single samples. Adding parental information to the CC part of the joint likelihood increased the power of generalised logistic regression under the TDTC but not the TDTCC scenario. Formal testing of differences between risk parameters in subsamples was the most sensitive approach to avoid confounding in combined analysis. Non-parametric analysis based on Monte-Carlo testing showed the highest power for ASPFCC samples.
  • De Goede, D., Shapiro, L. P., Wester, F., Swinney, D. A., & Bastiaanse, Y. R. M. (2009). The time course of verb processing in Dutch sentences. Journal of Psycholinguistic Research, 38(3), 181-199. doi:10.1007/s10936-009-9117-3.

    Abstract

    The verb has traditionally been characterized as the central element in a sentence. Nevertheless, the exact role of the verb during the actual ongoing comprehension of a sentence as it unfolds in time remains largely unknown. This paper reports the results of two Cross-Modal Lexical Priming (CMLP) experiments detailing the pattern of verb priming during on-line processing of Dutch sentences. Results are contrasted with data from a third CMLP experiment on priming of nouns in similar sentences. It is demonstrated that the meaning of a matrix verb remains active throughout the entire matrix clause, while this is not the case for the meaning of a subject head noun. Activation of the meaning of the verb only dissipates upon encountering a clear signal as to the start of a new clause.
  • Goldin-Meadow, S., Ozyurek, A., Sancar, B., & Mylander, C. (2009). Making language around the globe: A cross-linguistic study of homesign in the United States, China, and Turkey. In J. Guo, E. Lieven, N. Budwig, S. Ervin-Tripp, K. Nakamura, & S. Ozcaliskan (Eds.), Crosslinguistic approaches to the psychology of language: Research in the tradition of Dan Isaac Slobin (pp. 27-39). New York: Psychology Press.
  • Goldin-Meadow, S., Gentner, D., Ozyurek, A., & Gurcanli, O. (2009). Spatial language supports spatial cognition: Evidence from deaf homesigners [abstract]. Cognitive Processing, 10(Suppl. 2), S133-S134.
  • González-Peñas, J., De Hoyos, L., Díaz-Caneja, C. M., Andreu-Bernabeu, Á., Stella, C., Gurriarán, X., Fañanás, L., Bobes, J., González-Pinto, A., Crespo-Facorro, B., Martorell, L., Vilella, E., Muntané, G., Molto, M. D., Gonzalez-Piqueras, J. C., Parellada, M., Arango, C., & Costas, J. (2023). Recent natural selection conferred protection against schizophrenia by non-antagonistic pleiotropy. Scientific Reports, 13: 15500. doi:10.1038/s41598-023-42578-0.

    Abstract

    Schizophrenia is a debilitating psychiatric disorder associated with a reduced fertility and decreased life expectancy, yet common predisposing variation substantially contributes to the onset of the disorder, which poses an evolutionary paradox. Previous research has suggested balanced selection, a mechanism by which schizophrenia risk alleles could also provide advantages under certain environments, as a reliable explanation. However, recent studies have shown strong evidence against a positive selection of predisposing loci. Furthermore, evolutionary pressures on schizophrenia risk alleles could have changed throughout human history as new environments emerged. Here in this study, we used 1000 Genomes Project data to explore the relationship between schizophrenia predisposing loci and recent natural selection (RNS) signatures after the human diaspora out of Africa around 100,000 years ago on a genome-wide scale. We found evidence for significant enrichment of RNS markers in derived alleles arisen during human evolution conferring protection to schizophrenia. Moreover, both partitioned heritability and gene set enrichment analyses of mapped genes from schizophrenia predisposing loci subject to RNS revealed a lower involvement in brain and neuronal related functions compared to those not subject to RNS. Taken together, our results suggest non-antagonistic pleiotropy as a likely mechanism behind RNS that could explain the persistence of schizophrenia common predisposing variation in human populations due to its association to other non-psychiatric phenotypes.
  • Goriot, C., Broersma, M., McQueen, J. M., Unsworth, S., & Van Hout, R. (2018). Language balance and switching ability in children acquiring English as a second language. Journal of Experimental Child Psychology, 173, 168-186. doi:10.1016/j.jecp.2018.03.019.

    Abstract

    This study investigated whether relative lexical proficiency in Dutch and English in child second language (L2) learners is related to executive functioning. Participants were Dutch primary school pupils of three different age groups (4–5, 8–9, and 11–12 years) who either were enrolled in an early-English schooling program or were age-matched controls not on that early-English program. Participants performed tasks that measured switching, inhibition, and working memory. Early-English program pupils had greater knowledge of English vocabulary and more balanced Dutch–English lexicons. In both groups, lexical balance, a ratio measure obtained by dividing vocabulary scores in English by those in Dutch, was related to switching but not to inhibition or working memory performance. These results show that for children who are learning an L2 in an instructional setting, and for whom managing two languages is not yet an automatized process, language balance may be more important than L2 proficiency in influencing the relation between childhood bilingualism and switching abilities.
  • Goudbeek, M., Swingley, D., & Smits, R. (2009). Supervised and unsupervised learning of multidimensional acoustic categories. Journal of Experimental Psychology: Human Perception and Performance, 35, 1913-1933. doi:10.1037/a0015781.

    Abstract

    Learning to recognize the contrasts of a language-specific phonemic repertoire can be viewed as forming categories in a multidimensional psychophysical space. Research on the learning of distributionally defined visual categories has shown that categories defined over I dimension are easy to learn and that learning multidimensional categories is more difficult but tractable under specific task conditions. In 2 experiments, adult participants learned either a unidimensional ora multidimensional category distinction with or without supervision (feedback) during learning. The unidimensional distinctions were readily learned and supervision proved beneficial, especially in maintaining category learning beyond the learning phase. Learning the multidimensional category distinction proved to be much more difficult and supervision was not nearly as beneficial as with unidimensionally defined categories. Maintaining a learned multidimensional category distinction was only possible when the distributional information (hat identified the categories remained present throughout the testing phase. We conclude that listeners are sensitive to both trial-by-trial feedback and the distributional information in the stimuli. Even given limited exposure, listeners learned to use 2 relevant dimensions. albeit with considerable difficulty.
  • Graham, S. A., Jégouzo, S. A. F., Yan, S., Powlesland, A. S., Brady, J. P., Taylor, M. E., & Drickamer, K. (2009). Prolectin, a glycan-binding receptor on dividing B cells in germinal centers. The Journal of Biological Chemistry, 284, 18537-18544. doi:10.1074/jbc.M109.012807.

    Abstract

    Prolectin, a previously undescribed glycan-binding receptor, has been identified by re-screening of the human genome for genes encoding proteins containing potential C-type carbohydrate-recognition domains. Glycan array analysis revealed that the carbohydrate-recognition domain in the extracellular domain of the receptor binds glycans with terminal α-linked mannose or fucose residues. Prolectin expressed in fibroblasts is found at the cell surface, but unlike many glycan-binding receptors it does not mediate endocytosis of a neoglycoprotein ligand. However, compared with other known glycan-binding receptors, the receptor contains an unusually large intracellular domain that consists of multiple sequence motifs, including phosphorylated tyrosine residues, that allow it to interact with signaling molecules such as Grb2. Immunohistochemistry has been used to demonstrate that prolectin is expressed on a specialized population of proliferating B cells in germinal centers. Thus, this novel receptor has the potential to function in carbohydrate-mediated communication between cells in the germinal center.
  • Green, K., Osei-Cobbina, C., Perlman, M., & Kita, S. (2023). Infants can create different types of iconic gestures, with and without parental scaffolding. In W. Pouw, J. Trujillo, H. R. Bosker, L. Drijvers, M. Hoetjes, J. Holler, S. Kadava, L. Van Maastricht, E. Mamus, & A. Ozyurek (Eds.), Gesture and Speech in Interaction (GeSpIn) Conference. doi:10.17617/2.3527188.

    Abstract

    Despite the early emergence of pointing, children are generally not documented to produce iconic gestures until later in development. Although research has described this developmental trajectory and the types of iconic gestures that emerge first, there has been limited focus on iconic gestures within interactional contexts. This study identified the first 10 iconic gestures produced by five monolingual English-speaking children in a naturalistic longitudinal video corpus and analysed the interactional contexts. We found children produced their first iconic gesture between 12 and 20 months and that gestural types varied. Although 34% of gestures could have been imitated or derived from adult or child actions in the preceding context, the majority were produced independently of any observed model. In these cases, adults often led the interaction in a direction where iconic gesture was an appropriate response. Overall, we find infants can represent a referent symbolically and possess a greater capacity for innovation than previously assumed. In order to develop our understanding of how children learn to produce iconic gestures, it is important to consider the immediate interactional context. Conducting naturalistic corpus analyses could be a more ecologically valid approach to understanding how children learn to produce iconic gestures in real life contexts.
  • De Gregorio, C., Raimondi, T., Bevilacqua, V., Pertosa, C., Valente, D., Carugati, F., Bandoli, F., Favaro, L., Lefaux, B., Ravignani, A., & Gamba, M. (2023). Isochronous singing in 3 crested gibbon species (Nomascusspp.). Current Zoology. Advance online publication. doi:10.1093/cz/zoad029.

    Abstract

    The search for common characteristics between the musical abilities of humans and other animal species is still taking its first steps. One of the most promising aspects from a comparative point of view is the analysis of rhythmic components, which are crucial features of human communicative performance but also well-identifiable patterns in the vocal displays of other species. Therefore, the study of rhythm is becoming essential to understand the mechanisms of singing behavior and the evolution of human communication. Recent findings provided evidence that particular rhythmic structures occur in human music and some singing animal species, such as birds and rock hyraxes, but only 2 species of nonhuman primates have been investigated so far (Indri indri and Hylobates lar). Therefore, our study aims to consistently broaden the list of species studied regarding the presence of rhythmic categories. We investigated the temporal organization in the singing of 3 species of crested gibbons (Nomascus gabriellae, Nomascus leucogenys, and Nomascus siki) and found that the most prominent rhythmic category was isochrony. Moreover, we found slight variation in songs’ tempo among species, with N. gabriellae and N. siki singing with a temporal pattern involving a gradually increasing tempo (a musical accelerando), and N. leucogenys with a more regular pattern. Here, we show how the prominence of a peak at the isochrony establishes itself as a shared characteristic in the small apes considered so far.

    Additional information

    table SM1
  • Groen, I. I. A., Jahfari, S., Seijdel, N., Ghebreab, S., Lamme, V. A. F., & Scholte, H. S. (2018). Scene complexity modulates degree of feedback activity during object detection in natural scenes. PLoS Computational Biology, 14: e1006690. doi:10.1371/journal.pcbi.1006690.

    Abstract

    Selective brain responses to objects arise within a few hundreds of milliseconds of neural processing, suggesting that visual object recognition is mediated by rapid feed-forward activations. Yet disruption of neural responses in early visual cortex beyond feed-forward processing stages affects object recognition performance. Here, we unite these discrepant findings by reporting that object recognition involves enhanced feedback activity (recurrent processing within early visual cortex) when target objects are embedded in natural scenes that are characterized by high complexity. Human participants performed an animal target detection task on natural scenes with low, medium or high complexity as determined by a computational model of low-level contrast statistics. Three converging lines of evidence indicate that feedback was selectively enhanced for high complexity scenes. First, functional magnetic resonance imaging (fMRI) activity in early visual cortex (V1) was enhanced for target objects in scenes with high, but not low or medium complexity. Second, event-related potentials (ERPs) evoked by target objects were selectively enhanced at feedback stages of visual processing (from ~220 ms onwards) for high complexity scenes only. Third, behavioral performance for high complexity scenes deteriorated when participants were pressed for time and thus less able to incorporate the feedback activity. Modeling of the reaction time distributions using drift diffusion revealed that object information accumulated more slowly for high complexity scenes, with evidence accumulation being coupled to trial-to-trial variation in the EEG feedback response. Together, these results suggest that while feed-forward activity may suffice to recognize isolated objects, the brain employs recurrent processing more adaptively in naturalistic settings, using minimal feedback for simple scenes and increasing feedback for complex scenes.

    Additional information

    data via OSF
  • De Groot, A. M. B., & Hagoort, P. (Eds.). (2018). Research methods in psycholinguistics and the neurobiology of language: A practical guide. Oxford: Wiley.
  • Gubian, M., Torreira, F., Strik, H., & Boves, L. (2009). Functional data analysis as a tool for analyzing speech dynamics a case study on the French word c'était. In Proceedings of the 10th Annual Conference of the International Speech Communication Association (Interspeech 2009) (pp. 2199-2202).

    Abstract

    In this paper we introduce Functional Data Analysis (FDA) as a tool for analyzing dynamic transitions in speech signals. FDA makes it possible to perform statistical analyses of sets of mathematical functions in the same way as classical multivariate analysis treats scalar measurement data. We illustrate the use of FDA with a reduction phenomenon affecting the French word c'était /setε/ 'it was', which can be reduced to [stε] in conversational speech. FDA reveals that the dynamics of the transition from [s] to [t] in fully reduced cases may still be different from the dynamics of [s] - [t] transitions in underlying /st/ clusters such as in the word stage.
  • Le Guen, O. (2009). Geocentric gestural deixis among Yucatecan Maya (Quintana Roo, México). In 18th IACCP Book of Selected Congress Papers (pp. 123-136). Athens, Greece: Pedio Books Publishing.
  • Le Guen, O. (2009). The ethnography of emotions: A field worker's guide. In A. Majid (Ed.), Field manual volume 12 (pp. 31-34). Nijmegen: Max Planck Institute for Psycholinguistics. doi:10.17617/2.446076.

    Abstract

    The goal of this task is to investigate cross-cultural emotion categories in language and thought. This entry is designed to provide researchers with some guidelines to describe the emotional repertoire of a community from an emic perspective. The first objective is to offer ethnographic tools and a questionnaire in order to understand the semantics of emotional terms and the local conception of emotions. The second objective is to identify the local display rules of emotions in communicative interactions.
  • Guest, O., & Martin, A. E. (2023). On logical inference over brains, behaviour, and artificial neural networks. Computational Brain & Behavior, 6, 213-227. doi:10.1007/s42113-022-00166-x.

    Abstract

    In the cognitive, computational, and neuro-sciences, practitioners often reason about what computational models represent or learn, as well as what algorithm is instantiated. The putative goal of such reasoning is to generalize claims about the model in question, to claims about the mind and brain, and the neurocognitive capacities of those systems. Such inference is often based on a model’s performance on a task, and whether that performance approximates human behavior or brain activity. Here we demonstrate how such argumentation problematizes the relationship between models and their targets; we place emphasis on artificial neural networks (ANNs), though any theory-brain relationship that falls into the same schema of reasoning is at risk. In this paper, we model inferences from ANNs to brains and back within a formal framework — metatheoretical calculus — in order to initiate a dialogue on both how models are broadly understood and used, and on how to best formally characterize them and their functions. To these ends, we express claims from the published record about models’ successes and failures in first-order logic. Our proposed formalization describes the decision-making processes enacted by scientists to adjudicate over theories. We demonstrate that formalizing the argumentation in the literature can uncover potential deep issues about how theory is related to phenomena. We discuss what this means broadly for research in cognitive science, neuroscience, and psychology; what it means for models when they lose the ability to mediate between theory and data in a meaningful way; and what this means for the metatheoretical calculus our fields deploy when performing high-level scientific inference.
  • Gullberg, M., & Kita, S. (2009). Attention to speech-accompanying gestures: Eye movements and information uptake. Journal of Nonverbal Behavior, 33(4), 251-277. doi:10.1007/s10919-009-0073-2.

    Abstract

    There is growing evidence that addressees in interaction integrate the semantic information conveyed by speakers’ gestures. Little is known, however, about whether and how addressees’ attention to gestures and the integration of gestural information can be modulated. This study examines the influence of a social factor (speakers’ gaze to their own gestures), and two physical factors (the gesture’s location in gesture space and gestural holds) on addressees’ overt visual attention to gestures (direct fixations of gestures) and their uptake of gestural information. It also examines the relationship between gaze and uptake. The results indicate that addressees’ overt visual attention to gestures is affected both by speakers’ gaze and holds but for different reasons, whereas location in space plays no role. Addressees’ uptake of gesture information is only influenced by speakers’ gaze. There is little evidence of a direct relationship between addressees’ direct fixations of gestures and their uptake.
  • Gullberg, M. (2009). Gestures and the development of semantic representations in first and second language acquisition. Acquisition et Interaction en Langue Etrangère..Languages, Interaction, and Acquisition (former AILE), 1, 117-139.

    Abstract

    This paper argues that speech-associated gestures can usefully inform studies exploring development of meaning in first and second language acquisition. The example domain is caused motion or placement meaning (putting a cup on a table) where acquisition problems have been observed and where adult native gesture use reflects crosslinguistically different placement verb semantics. Against this background, the paper summarises three studies examining the development of semantic representations in Dutch children acquiring Dutch, and adult learners’ acquiring Dutch and French placement verbs. Overall, gestures change systematically with semantic development both in children and adults and (1) reveal what semantic elements are included in current semantic representations, whether target-like or not, and (2) highlight developmental shifts in those representations. There is little evidence that gestures chiefly act as a support channel. Instead, the data support the theoretical notion that speech and gesture form an integrated system, opening new possibilities for studying the processes of acquisition.
  • Gullberg, M. (2009). Reconstructing verb meaning in a second language: How English speakers of L2 Dutch talk and gesture about placement. Annual Review of Cognitive Linguistics, 7, 221-245. doi:10.1075/arcl.7.09gul.

    Abstract

    This study examines to what extent English speakers of L2 Dutch reconstruct the meanings of placement verbs when moving from a general L1 verb of caused motion (put) to two specific caused posture verbs (zetten/leggen ‘set/lay’) in the L2 and whether the existence of low-frequency cognate forms in the L1 (set/lay) alleviates the reconstruction problem. Evidence from speech and gesture indicates that English speakers have difficulties with the specific verbs in L2 Dutch, initially looking for means to express general caused motion in L1-like fashion through over-generalisation. The gesture data further show that targetlike forms are often used to convey L1-like meaning. However, the differentiated use of zetten for vertical placement and dummy verbs (gaan ‘go’ and doen ‘do’) and intransitive posture verbs (zitten/staan/liggen ‘sit, stand, lie’) for horizontal placement, and a positive correlation between appropriate verb use and target-like gesturing suggest a beginning sensitivity to the semantic parameters of the L2 verbs and possible reconstruction.
  • Gullberg, M., Indefrey, P., & Muysken, P. (2009). Research techniques for the study of code-switching. In B. E. Bullock, & J. A. Toribio (Eds.), The Cambridge handbook on linguistic code-switching (pp. 21-39). Cambridge: Cambridge University Press.

    Abstract

    The aim of this chapter is to provide researchers with a tool kit of semi-experimental and experimental techniques for studying code-switching. It presents an overview of the current off-line and on-line research techniques, ranging from analyses of published bilingual texts of spontaneous conversations, to tightly controlled experiments. A multi-task approach used for studying code-switched sentence production in Papiamento-Dutch bilinguals is also exemplified.
  • Gullberg, M. (2009). Why gestures are relevant to the bilingual mental lexicon. In A. Pavlenko (Ed.), The bilingual mental lexicon: Interdisciplinary approaches (pp. 161-184). Clevedon: Multilingual Matters.

    Abstract

    Gestures, the symbolic movements speakers perform while they speak, are systematically related to speech and language in non-trivial ways. This chapter presents an overview of what gestures can and cannot tell us about the monolingual and the bilingual mental lexicon. Gesture analysis opens for a broader view of the mental lexicon, targeting the interface between conceptual, semantic and syntactic aspects of event construal, and offers new possibilities for examining how languages co-exist and interact in bilinguals beyond the level of surface forms. The first section of this chapter gives a brief introduction to gesture studies and outlines the current views on the relationship between gesture, speech, and language. The second section targets the key questions for the study of the monolingual and bilingual lexicon, and illustrates the methods employed for addressing these questions. It further exemplifies systematic cross-linguistic patterns in gestural behaviour in monolingual and bilingual contexts. The final section discusses some implications of an expanded view of the multilingual lexicon that includes gesture, and outlines directions for future inquiry.

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  • Haghani, A., Li, C. Z., Robeck, T. R., Zhang, J., Lu, A. T., Ablaeva, J., Acosta-Rodríguez, V. A., Adams, D. M., Alagaili, A. N., Almunia, J., Aloysius, A., Amor, N. M. S., Ardehali, R., Arneson, A., Baker, C. S., Banks, G., Belov, K., Bennett, N. C., Black, P., Blumstein, D. T. and 170 moreHaghani, A., Li, C. Z., Robeck, T. R., Zhang, J., Lu, A. T., Ablaeva, J., Acosta-Rodríguez, V. A., Adams, D. M., Alagaili, A. N., Almunia, J., Aloysius, A., Amor, N. M. S., Ardehali, R., Arneson, A., Baker, C. S., Banks, G., Belov, K., Bennett, N. C., Black, P., Blumstein, D. T., Bors, E. K., Breeze, C. E., Brooke, R. T., Brown, J. L., Carter, G., Caulton, A., Cavin, J. M., Chakrabarti, L., Chatzistamou, I., Chavez, A. S., Chen, H., Cheng, K., Chiavellini, P., Choi, O.-W., Clarke, S., Cook, J. A., Cooper, L. N., Cossette, M.-L., Day, J., DeYoung, J., Dirocco, S., Dold, C., Dunnum, J. L., Ehmke, E. E., Emmons, C. K., Emmrich, S., Erbay, E., Erlacher-Reid, C., Faulkes, C. G., Fei, Z., Ferguson, S. H., Finno, C. J., Flower, J. E., Gaillard, J.-M., Garde, E., Gerber, L., Gladyshev, V. N., Goya, R. G., Grant, M. J., Green, C. B., Hanson, M. B., Hart, D. W., Haulena, M., Herrick, K., Hogan, A. N., Hogg, C. J., Hore, T. A., Huang, T., Izpisua Belmonte, J. C., Jasinska, A. J., Jones, G., Jourdain, E., Kashpur, O., Katcher, H., Katsumata, E., Kaza, V., Kiaris, H., Kobor, M. S., Kordowitzki, P., Koski, W. R., Krützen, M., Kwon, S. B., Larison, B., Lee, S.-G., Lehmann, M., Lemaître, J.-F., Levine, A. J., Li, X., Li, C., Lim, A. R., Lin, D. T. S., Lindemann, D. M., Liphardt, S. W., Little, T. J., Macoretta, N., Maddox, D., Matkin, C. O., Mattison, J. A., McClure, M., Mergl, J., Meudt, J. J., Montano, G. A., Mozhui, K., Munshi-South, J., Murphy, W. J., Naderi, A., Nagy, M., Narayan, P., Nathanielsz, P. W., Nguyen, N. B., Niehrs, C., Nyamsuren, B., O’Brien, J. K., Ginn, P. O., Odom, D. T., Ophir, A. G., Osborn, S., Ostrander, E. A., Parsons, K. M., Paul, K. C., Pedersen, A. B., Pellegrini, M., Peters, K. J., Petersen, J. L., Pietersen, D. W., Pinho, G. M., Plassais, J., Poganik, J. R., Prado, N. A., Reddy, P., Rey, B., Ritz, B. R., Robbins, J., Rodriguez, M., Russell, J., Rydkina, E., Sailer, L. L., Salmon, A. B., Sanghavi, A., Schachtschneider, K. M., Schmitt, D., Schmitt, T., Schomacher, L., Schook, L. B., Sears, K. E., Seifert, A. W., Shafer, A. B. A., Shindyapina, A. V., Simmons, M., Singh, K., Sinha, I., Slone, J., Snell, R. G., Soltanmohammadi, E., Spangler, M. L., Spriggs, M., Staggs, L., Stedman, N., Steinman, K. J., Stewart, D. T., Sugrue, V. J., Szladovits, B., Takahashi, J. S., Takasugi, M., Teeling, E. C., Thompson, M. J., Van Bonn, B., Vernes, S. C., Villar, D., Vinters, H. V., Vu, H., Wallingford, M. C., Wang, N., Wilkinson, G. S., Williams, R. W., Yan, Q., Yao, M., Young, B. G., Zhang, B., Zhang, Z., Zhao, Y., Zhao, P., Zhou, W., Zoller, J. A., Ernst, J., Seluanov, A., Gorbunova, V., Yang, X. W., Raj, K., & Horvath, S. (2023). DNA methylation networks underlying mammalian traits. Science, 381(6658): eabq5693. doi:10.1126/science.abq5693.

    Abstract

    INTRODUCTION
    Comparative epigenomics is an emerging field that combines epigenetic signatures with phylogenetic relationships to elucidate species characteristics such as maximum life span. For this study, we generated cytosine DNA methylation (DNAm) profiles (n = 15,456) from 348 mammalian species using a methylation array platform that targets highly conserved cytosines.
    RATIONALE
    Nature has evolved mammalian species of greatly differing life spans. To resolve the relationship of DNAm with maximum life span and phylogeny, we performed a large-scale cross-species unsupervised analysis. Comparative studies in many species enables the identification of epigenetic correlates of maximum life span and other traits.
    RESULTS
    We first tested whether DNAm levels in highly conserved cytosines captured phylogenetic relationships among species. We constructed phyloepigenetic trees that paralleled the traditional phylogeny. To avoid potential confounding by different tissue types, we generated tissue-specific phyloepigenetic trees. The high phyloepigenetic-phylogenetic congruence is due to differences in methylation levels and is not confounded by sequence conservation.
    We then interrogated the extent to which DNA methylation associates with specific biological traits. We used an unsupervised weighted correlation network analysis (WGCNA) to identify clusters of highly correlated CpGs (comethylation modules). WGCNA identified 55 distinct comethylation modules, of which 30 were significantly associated with traits including maximum life span, adult weight, age, sex, human mortality risk, or perturbations that modulate murine life span.
    Both the epigenome-wide association analysis (EWAS) and eigengene-based analysis identified methylation signatures of maximum life span, and most of these were independent of aging, presumably set at birth, and could be stable predictors of life span at any point in life. Several CpGs that are more highly methylated in long-lived species are located near HOXL subclass homeoboxes and other genes that play a role in morphogenesis and development. Some of these life span–related CpGs are located next to genes that are also implicated in our analysis of upstream regulators (e.g., ASCL1 and SMAD6). CpGs with methylation levels that are inversely related to life span are enriched in transcriptional start site (TSS1) and promoter flanking (PromF4, PromF5) associated chromatin states. Genes located in chromatin state TSS1 are constitutively active and enriched for nucleic acid metabolic processes. This suggests that long-living species evolved mechanisms that maintain low methylation levels in these chromatin states that would favor higher expression levels of genes essential for an organism’s survival.
    The upstream regulator analysis of the EWAS of life span identified the pluripotency transcription factors OCT4, SOX2, and NANOG. Other factors, such as POLII, CTCF, RAD21, YY1, and TAF1, showed the strongest enrichment for negatively life span–related CpGs.
    CONCLUSION
    The phyloepigenetic trees indicate that divergence of DNA methylation profiles closely parallels that of genetics through evolution. Our results demonstrate that DNA methylation is subjected to evolutionary pressures and selection. The publicly available data from our Mammalian Methylation Consortium are a rich source of information for different fields such as evolutionary biology, developmental biology, and aging.
  • Hagoort, P. (2023). The language marker hypothesis. Cognition, 230: 105252. doi:10.1016/j.cognition.2022.105252.

    Abstract

    According to the language marker hypothesis language has provided homo sapiens with a rich symbolic system that plays a central role in interpreting signals delivered by our sensory apparatus, in shaping action goals, and in creating a powerful tool for reasoning and inferencing. This view provides an important correction on embodied accounts of language that reduce language to action, perception, emotion and mental simulation. The presence of a language system has, however, also important consequences for perception, action, emotion, and memory. Language stamps signals from perception, action, and emotional systems with rich cognitive markers that transform the role of these signals in the overall cognitive architecture of the human mind. This view does not deny that language is implemented by means of universal principles of neural organization. However, language creates the possibility to generate rich internal models of the world that are shaped and made accessible by the characteristics of a language system. This makes us less dependent on direct action-perception couplings and might even sometimes go at the expense of the veridicality of perception. In cognitive (neuro)science the pendulum has swung from language as the key to understand the organization of the human mind to the perspective that it is a byproduct of perception and action. It is time that it partly swings back again.
  • Hagoort, P. (2009). The fractionation of spoken language understanding by measuring electrical and magnetic brain signals. In B. C. J. Moore, L. K. Tyler, & W. Marslen-Wilson (Eds.), The perception of speech: From sound to meaning (pp. 223-248). New York: Oxford University Press.
  • Hagoort, P., & Brown, C. M. (1994). Brain responses to lexical ambiguity resolution and parsing. In C. Clifton Jr, L. Frazier, & K. Rayner (Eds.), Perspectives on sentence processing (pp. 45-81). Hilsdale NY: Lawrence Erlbaum Associates.
  • Hagoort, P. (1994). Afasie als een tekort aan tijd voor spreken en verstaan. De Psycholoog, 4, 153-154.
  • Hagoort, P. (1994). Het brein op een kier: Over hersenen gesproken. Psychologie, 13, 42-46.

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