Publications

Displaying 201 - 290 of 290
  • Ozyurek, A., & Trabasso, T. (1997). Evaluation during the understanding of narratives. Discourse Processes, 23(3), 305-337. Retrieved from http://search.ebscohost.com/login.aspx?direct=true&db=hlh&AN=12673020&site=ehost-live.

    Abstract

    Evaluation plays a role in the telling and understanding of narratives, in communicative interaction, emotional understanding, and in psychological well-being. This article reports a study of evaluation by describing how readers monitor the concerns of characters over the course of a narrative. The main hypothesis is that readers tract the well-being via the expression of a character's internal states. Reader evaluations were revealed in think aloud protocols obtained during reading of narrative texts, one sentence at a time. Five kinds of evaluative inferences were found: appraisals (good versus bad), preferences (like versus don't like), emotions (happy versus frustrated), goals (want versus don't want), or purposes (to attain or maintain X versus to prevent or avoid X). Readers evaluated all sentences. The mean rate of evaluation per sentence was 0.55. Positive and negative evaluations over the course of the story indicated that things initially went badly for characters, improved with the formulation and execution of goal plans, declined with goal failure, and improved as characters formulated new goals and succeeded. The kind of evaluation made depended upon the episodic category of the event and the event's temporal location in the story. Evaluations also served to explain or predict events. In making evaluations, readers stayed within the frame of the story and perspectives of the character or narrator. They also moved out of the narrative frame and addressed evaluations towards the experimenter in a communicative context.
  • Pereiro Estevan, Y., Wan, V., & Scharenborg, O. (2007). Finding maximum margin segments in speech. Acoustics, Speech and Signal Processing, 2007. ICASSP 2007. IEEE International Conference, IV, 937-940. doi:10.1109/ICASSP.2007.367225.

    Abstract

    Maximum margin clustering (MMC) is a relatively new and promising kernel method. In this paper, we apply MMC to the task of unsupervised speech segmentation. We present three automatic speech segmentation methods based on MMC, which are tested on TIMIT and evaluated on the level of phoneme boundary detection. The results show that MMC is highly competitive with existing unsupervised methods for the automatic detection of phoneme boundaries. Furthermore, initial analyses show that MMC is a promising method for the automatic detection of sub-phonetic information in the speech signal.
  • Perniss, P. M. (2007). Achieving spatial coherence in German sign language narratives: The use of classifiers and perspective. Lingua, 117(7), 1315-1338. doi:10.1016/j.lingua.2005.06.013.

    Abstract

    Spatial coherence in discourse relies on the use of devices that provide information about where referents are and where events take place. In signed language, two primary devices for achieving and maintaining spatial coherence are the use of classifier forms and signing perspective. This paper gives a unified account of the relationship between perspective and classifiers, and divides the range of possible correspondences between these two devices into prototypical and non-prototypical alignments. An analysis of German Sign Language narratives of complex events investigates the role of different classifier-perspective constructions in encoding spatial information about location, orientation, action and motion, as well as size and shape of referents. In particular, I show how non-prototypical alignments, including simultaneity of perspectives, contribute to the maintenance of spatial coherence, and provide functional explanations in terms of efficiency and informativeness constraints on discourse.
  • Petersson, K. M., Elfgren, C., & Ingvar, M. (1997). A dynamic role of the medial temporal lobe during retrieval of declarative memory in man. NeuroImage, 6, 1-11.

    Abstract

    Understanding the role of the medial temporal lobe (MTL) in learning and memory is an important problem in cognitive neuroscience. Memory and learning processes that depend on the function of the MTL and related diencephalic structures (e.g., the anterior and mediodorsal thalamic nuclei) are defined as declarative. We have studied the MTL activity as indicated by regional cerebral blood flow with positron emission tomography and statistical parametric mapping during recall of abstract designs in a less practiced memory state as well as in a well-practiced (well-encoded) memory state. The results showed an increased activity of the MTL bilaterally (including parahippocampal gyrus extending into hippocampus proper, as well as anterior lingual and anterior fusiform gyri) during retrieval in the less practiced memory state compared to the well-practiced memory state, indicating a dynamic role of the MTL in retrieval during the learning processes. The results also showed that the activation of the MTL decreases as the subjects learn to draw abstract designs from memory, indicating a changing role of the MTL during recall in the earlier stages of acquisition compared to the well-encoded declarative memory state.
  • Petersson, K. M., Silva, C., Castro-Caldas, A., Ingvar, M., & Reis, A. (2007). Literacy: A cultural influence on functional left-right differences in the inferior parietal cortex. European Journal of Neuroscience, 26(3), 791-799. doi:10.1111/j.1460-9568.2007.05701.x.

    Abstract

    The current understanding of hemispheric interaction is limited. Functional hemispheric specialization is likely to depend on both genetic and environmental factors. In the present study we investigated the importance of one factor, literacy, for the functional lateralization in the inferior parietal cortex in two independent samples of literate and illiterate subjects. The results show that the illiterate group are consistently more right-lateralized than their literate controls. In contrast, the two groups showed a similar degree of left-right differences in early speech-related regions of the superior temporal cortex. These results provide evidence suggesting that a cultural factor, literacy, influences the functional hemispheric balance in reading and verbal working memory-related regions. In a third sample, we investigated grey and white matter with voxel-based morphometry. The results showed differences between literacy groups in white matter intensities related to the mid-body region of the corpus callosum and the inferior parietal and parietotemporal regions (literate > illiterate). There were no corresponding differences in the grey matter. This suggests that the influence of literacy on brain structure related to reading and verbal working memory is affecting large-scale brain connectivity more than grey matter per se.
  • Pickering, M. J., & Majid, A. (2007). What are implicit causality and consequentiality? Language and Cognitive Processes, 22(5), 780-788. doi:10.1080/01690960601119876.

    Abstract

    Much work in psycholinguistics and social psychology has investigated the notion of implicit causality associated with verbs. Crinean and Garnham (2006) relate implicit causality to another phenomenon, implicit consequentiality. We argue that they and other researchers have confused the meanings of events and the reasons for those events, so that particular thematic roles (e.g., Agent, Patient) are taken to be causes or consequences of those events by definition. In accord with Garvey and Caramazza (1974), we propose that implicit causality and consequentiality are probabilistic notions that are straightforwardly related to the explicit causes and consequences of events and are analogous to other biases investigated in psycholinguistics.
  • Pijls, F., Daelemans, W., & Kempen, G. (1987). Artificial intelligence tools for grammar and spelling instruction. Instructional Science, 16(4), 319-336. doi:10.1007/BF00117750.

    Abstract

    In The Netherlands, grammar teaching is an especially important subject in the curriculum of children aged 10-15 for several reasons. However, in spite of all attention and time invested, the results are poor. This article describes the problems and our attempt to overcome them by developing an intelligent computational instructional environment consisting of: a linguistic expert system, containing a module representing grammar and spelling rules and a number of modules to manipulate these rules; a didactic module; and a student interface with special facilities for grammar and spelling. Three prototypes of the functionality are discussed: BOUWSTEEN and COGO, which are programs for constructing and analyzing Dutch sentences; and TDTDT, a program for the conjugation of Dutch verbs.
  • Pijls, F., & Kempen, G. (1987). Kennistechnologische leermiddelen in het grammatica- en spellingonderwijs. Nederlands Tijdschrift voor de Psychologie, 42, 354-363.
  • Pine, J. M., Lieven, E. V., & Rowland, C. F. (1997). Stylistic variation at the “single-word” stage: Relations between maternal speech characteristics and children's vocabulary composition and usage. Child Development, 68(5), 807-819. doi:10.1111/j.1467-8624.1997.tb01963.x.

    Abstract

    In this study we test a number of different claims about the nature of stylistic variation at the “single-word” stage by examining the relation between variation in early vocabulary composition, variation in early language use, and variation in the structural and functional propreties of mothers' child-directed speech. Maternal-report and observational data were collected for 26 children at 10, 50, and 100 words, These were then correlated with a variety of different measures of maternal speech at 10 words, The results show substantial variation in the percentage of common nouns and unanalyzed phrases in children's vocabularies, and singficant relations between this variation and the way in which language is used by the child. They also reveal singficant relations between the way in whch mothers use language at 10 words and the way in chich their children use language at 50 words and between certain formal properties of mothers speech at 10 words and the percentage of common nouns and unanalyzed phrases in children's early vocabularies, However, most of these relations desappear when an attempt is made to control for ossible effects of the child on the mother at Time 1. The exception is a singficant negative correlation between mothers tendency to produce speech that illustrates word boundaries and the percentage of unanalyzed phrases at 50 and 100 words. This suggests that mothers whose sprech provides the child with information about where new words begin and end tend to have children with few unanalyzed. phrases in their early vocabularies.
  • Poletiek, F. H. (1997). De wet 'bijzondere opnemingen in psychiatrische ziekenhuizen' aan de cijfers getoetst. Maandblad voor Geestelijke Volksgezondheid, 4, 349-361.
  • Poletiek, F. H. (in preparation). Inside the juror: The psychology of juror decision-making [Bespreking van De geest van de jury (1997)].
  • Prieto, P., & Torreira, F. (2007). The segmental anchoring hypothesis revisited: Syllable structure and speech rate effects on peak timing in Spanish. Journal of Phonetics, 35, 473-500. doi:10.1016/j.wocn.2007.01.001.

    Abstract

    This paper addresses the validity of the segmental anchoring hypothesis for tonal landmarks (henceforth, SAH) as described in recent work by (among others) Ladd, Faulkner, D., Faulkner, H., & Schepman [1999. Constant ‘segmental’ anchoring of f0 movements under changes in speech rate. Journal of the Acoustical Society of America, 106, 1543–1554], Ladd [2003. Phonological conditioning of f0 target alignment. In: M. J. Solé, D. Recasens, & J. Romero (Eds.), Proceedings of the XVth international congress of phonetic sciences, Vol. 1, (pp. 249–252). Barcelona: Causal Productions; in press. Segmental anchoring of pitch movements: Autosegmental association or gestural coordination? Italian Journal of Linguistics, 18 (1)]. The alignment of LH* prenuclear peaks with segmental landmarks in controlled speech materials in Peninsular Spanish is analyzed as a function of syllable structure type (open, closed) of the accented syllable, segmental composition, and speaking rate. Contrary to the predictions of the SAH, alignment was affected by syllable structure and speech rate in significant and consistent ways. In: CV syllables the peak was located around the end of the accented vowel, and in CVC syllables around the beginning-mid part of the sonorant coda, but still far from the syllable boundary. With respect to the effects of rate, peaks were located earlier in the syllable as speech rate decreased. The results suggest that the accent gestures under study are synchronized with the syllable unit. In general, the longer the syllable, the longer the rise time. Thus the fundamental idea of the anchoring hypothesis can be taken as still valid. On the other hand, the tonal alignment patterns reported here can be interpreted as the outcome of distinct modes of gestural coordination in syllable-initial vs. syllable-final position: gestures at syllable onsets appear to be more tightly coordinated than gestures at the end of syllables [Browman, C. P., & Goldstein, L.M. (1986). Towards an articulatory phonology. Phonology Yearbook, 3, 219–252; Browman, C. P., & Goldstein, L. (1988). Some notes on syllable structure in articulatory phonology. Phonetica, 45, 140–155; (1992). Articulatory Phonology: An overview. Phonetica, 49, 155–180; Krakow (1999). Physiological organization of syllables: A review. Journal of Phonetics, 27, 23–54; among others]. Intergestural timing can thus provide a unifying explanation for (1) the contrasting behavior between the precise synchronization of L valleys with the onset of the syllable and the more variable timing of the end of the f0 rise, and, more specifically, for (2) the right-hand tonal pressure effects and ‘undershoot’ patterns displayed by peaks at the ends of syllables and other prosodic domains.
  • Protopapas, A., Gerakaki, S., & Alexandri, S. (2007). Sources of information for stress assignment in reading Greek. Applied Psycholinguistics, 28(4), 695 -720. doi:10.1017/S0142716407070373.

    Abstract

    To assign lexical stress when reading, the Greek reader can potentially rely on lexical information (knowledge of the word), visual–orthographic information (processing of the written diacritic), or a default metrical strategy (penultimate stress pattern). Previous studies with secondary education children have shown strong lexical effects on stress assignment and have provided evidence for a default pattern. Here we report two experiments with adult readers, in which we disentangle and quantify the effects of these three potential sources using nonword materials. Stimuli either resembled or did not resemble real words, to manipulate availability of lexical information; and they were presented with or without a diacritic, in a word-congruent or word-incongruent position, to contrast the relative importance of the three sources. Dual-task conditions, in which cognitive load during nonword reading was increased with phonological retention carrying a metrical pattern different from the default, did not support the hypothesis that the default arises from cumulative lexical activation in working memory.
  • Qin, S., Piekema, C., Petersson, K. M., Han, B., Luo, J., & Fernández, G. (2007). Probing the transformation of discontinuous associations into episodic memory: An event-related fMRI study. NeuroImage, 38(1), 212-222. doi:10.1016/j.neuroimage.2007.07.020.

    Abstract

    Using event-related functional magnetic resonance imaging, we identified brain regions involved in storing associations of events discontinuous in time into long-term memory. Participants were scanned while memorizing item-triplets including simultaneous and discontinuous associations. Subsequent memory tests showed that participants remembered both types of associations equally well. First, by constructing the contrast between the subsequent memory effects for discontinuous associations and simultaneous associations, we identified the left posterior parahippocampal region, dorsolateral prefrontal cortex, the basal ganglia, posterior midline structures, and the middle temporal gyrus as being specifically involved in transforming discontinuous associations into episodic memory. Second, we replicated that the prefrontal cortex and the medial temporal lobe (MTL) especially the hippocampus are involved in associative memory formation in general. Our findings provide evidence for distinct neural operation(s) that supports the binding and storing discontinuous associations in memory. We suggest that top-down signals from the prefrontal cortex and MTL may trigger reactivation of internal representation in posterior midline structures of the first event, thus allowing it to be associated with the second event. The dorsolateral prefrontal cortex together with basal ganglia may support this encoding operation by executive and binding processes within working memory, and the posterior parahippocampal region may play a role in binding and memory formation.
  • Reis, A., Faísca, L., Mendonça, S., Ingvar, M., & Petersson, K. M. (2007). Semantic interference on a phonological task in illiterate subjects. Scandinavian Journal of Psychology, 48(1), 69-74. doi:10.1111/j.1467-9450.2006.00544.x.

    Abstract

    Previous research suggests that learning an alphabetic written language influences aspects of the auditory-verbal language system. In this study, we examined whether literacy influences the notion of words as phonological units independent of lexical semantics in literate and illiterate subjects. Subjects had to decide which item in a word- or pseudoword pair was phonologically longest. By manipulating the relationship between referent size and phonological length in three word conditions (congruent, neutral, and incongruent) we could examine to what extent subjects focused on form rather than meaning of the stimulus material. Moreover, the pseudoword condition allowed us to examine global phonological awareness independent of lexical semantics. The results showed that literate performed significantly better than illiterate subjects in the neutral and incongruent word conditions as well as in the pseudoword condition. The illiterate group performed least well in the incongruent condition and significantly better in the pseudoword condition compared to the neutral and incongruent word conditions and suggest that performance on phonological word length comparisons is dependent on literacy. In addition, the results show that the illiterate participants are able to perceive and process phonological length, albeit less well than the literate subjects, when no semantic interference is present. In conclusion, the present results confirm and extend the finding that illiterate subjects are biased towards semantic-conceptual-pragmatic types of cognitive processing.
  • Roberts, L., Marinis, T., Felser, C., & Clahsen, H. (2007). Antecedent priming at trace positions in children’s sentence processing. Journal of Psycholinguistic Research, 36(2), 175-188. doi: 10.1007/s10936-006-9038-3.

    Abstract

    The present study examines whether children reactivate a moved constituent at its gap position and how children’s more limited working memory span affects the way they process filler-gap dependencies. 46 5–7 year-old children and 54 adult controls participated in a cross-modal picture priming experiment and underwent a standardized working memory test. The results revealed a statistically significant interaction between the participants’ working memory span and antecedent reactivation: High-span children (n = 19) and high-span adults (n = 22) showed evidence of antecedent priming at the gap site, while for low-span children and adults, there was no such effect. The antecedent priming effect in the high-span participants indicates that in both children and adults, dislocated arguments access their antecedents at gap positions. The absence of an antecedent reactivation effect in the low-span participants could mean that these participants required more time to integrate the dislocated constituent and reactivated the filler later during the sentence.
  • Roberts, L. (2007). Investigating real-time sentence processing in the second language. Stem-, Spraak- en Taalpathologie, 15, 115-127.

    Abstract

    Second language (L2) acquisition researchers have always been concerned with what L2 learners know about the grammar of the target language but more recently there has been growing interest in how L2 learners put this knowledge to use in real-time sentence comprehension. In order to investigate real-time L2 sentence processing, the types of constructions studied and the methods used are often borrowed from the field of monolingual processing, but the overall issues are familiar from traditional L2 acquisition research. These cover questions relating to L2 learners’ native-likeness, whether or not L1 transfer is in evidence, and how individual differences such as proficiency and language experience might have an effect. The aim of this paper is to provide for those unfamiliar with the field, an overview of the findings of a selection of behavioral studies that have investigated such questions, and to offer a picture of how L2 learners and bilinguals may process sentences in real time.
  • Roelofs, A. (2007). On the modelling of spoken word planning: Rejoinder to La Heij, Starreveld, and Kuipers (2007). Language and Cognitive Processes, 22(8), 1281-1286. doi:10.1080/01690960701462291.

    Abstract

    The author contests several claims of La Heij, Starreveld, and Kuipers (this issue) concerning the modelling of spoken word planning. The claims are about the relevance of error findings, the interaction between semantic and phonological factors, the explanation of word-word findings, the semantic relatedness paradox, and production rules.
  • Roelofs, A. (2007). A critique of simple name-retrieval models of spoken word planning. Language and Cognitive Processes, 22(8), 1237-1260. doi:10.1080/01690960701461582.

    Abstract

    Simple name-retrieval models of spoken word planning (Bloem & La Heij, 2003; Starreveld & La Heij, 1996) maintain (1) that there are two levels in word planning, a conceptual and a lexical phonological level, and (2) that planning a word in both object naming and oral reading involves the selection of a lexical phonological representation. Here, the name retrieval models are compared to more complex models with respect to their ability to account for relevant data. It appears that the name retrieval models cannot easily account for several relevant findings, including some speech error biases, types of morpheme errors, and context effects on the latencies of responding to pictures and words. New analyses of the latency distributions in previous studies also pose a challenge. More complex models account for all these findings. It is concluded that the name retrieval models are too simple and that the greater complexity of the other models is warranted
  • Roelofs, A. (2007). Attention and gaze control in picture naming, word reading, and word categorizing. Journal of Memory and Language, 57(2), 232-251. doi:10.1016/j.jml.2006.10.001.

    Abstract

    The trigger for shifting gaze between stimuli requiring vocal and manual responses was examined. Participants were presented with picture–word stimuli and left- or right-pointing arrows. They vocally named the picture (Experiment 1), read the word (Experiment 2), or categorized the word (Experiment 3) and shifted their gaze to the arrow to manually indicate its direction. The experiments showed that the temporal coordination of vocal responding and gaze shifting depends on the vocal task and, to a lesser extent, on the type of relationship between picture and word. There was a close temporal link between gaze shifting and manual responding, suggesting that the gaze shifts indexed shifts of attention between the vocal and manual tasks. Computer simulations showed that a simple extension of WEAVER++ [Roelofs, A. (1992). A spreading-activation theory of lemma retrieval in speaking. Cognition, 42, 107–142.; Roelofs, A. (2003). Goal-referenced selection of verbal action: modeling attentional control in the Stroop task. Psychological Review, 110, 88–125.] with assumptions about attentional control in the coordination of vocal responding, gaze shifting, and manual responding quantitatively accounts for the key findings.
  • Roelofs, A., Özdemir, R., & Levelt, W. J. M. (2007). Influences of spoken word planning on speech recognition. Journal of Experimental Psychology: Learning, Memory, and Cognition, 33(5), 900-913. doi:10.1037/0278-7393.33.5.900.

    Abstract

    In 4 chronometric experiments, influences of spoken word planning on speech recognition were examined. Participants were shown pictures while hearing a tone or a spoken word presented shortly after picture onset. When a spoken word was presented, participants indicated whether it contained a prespecified phoneme. When the tone was presented, they indicated whether the picture name contained the phoneme (Experiment 1) or they named the picture (Experiment 2). Phoneme monitoring latencies for the spoken words were shorter when the picture name contained the prespecified phoneme compared with when it did not. Priming of phoneme monitoring was also obtained when the phoneme was part of spoken nonwords (Experiment 3). However, no priming of phoneme monitoring was obtained when the pictures required no response in the experiment, regardless of monitoring latency (Experiment 4). These results provide evidence that an internal phonological pathway runs from spoken word planning to speech recognition and that active phonological encoding is a precondition for engaging the pathway. (PsycINFO Database Record (c) 2007 APA, all rights reserved)
  • Roelofs, A. (1997). The WEAVER model of word-form encoding in speech production. Cognition, 64, 249-284. doi:10.1016/S0010-0277(97)00027-9.

    Abstract

    Lexical access in speaking consists of two major steps: lemma retrieval and word-form encoding. In Roelofs (Roelofs, A. 1992a. Cognition 42. 107-142; Roelofs. A. 1993. Cognition 47, 59-87.), I described a model of lemma retrieval. The present paper extends this work by presenting a comprehensive model of the second access step, word-form encoding. The model is called WEAVER (Word-form Encoding by Activation and VERification). Unlike other models of word-form generation, WEAVER is able to provide accounts of response time data, particularly from the picture-word interference paradigm and the implicit priming paradigm. Its key features are (1) retrieval by spreading activation, (2) verification of activated information by a production rule, (3) a rightward incremental construction of phonological representations using a principle of active syllabification, syllables are constructed on the fly rather than stored with lexical items, (4) active competitive selection of syllabic motor programs using a mathematical formalism that generates response times and (5) the association of phonological speech errors with the selection of syllabic motor programs due to the failure of verification.
  • Rösler, D., & Skiba, R. (1988). Möglichkeiten für den Einsatz einer Lehrmaterial-Datenbank in der Lehrerfortbildung. Deutsch lernen, 14(1), 24-31.
  • Rowland, C. F. (2007). Explaining errors in children’s questions. Cognition, 104(1), 106-134. doi:10.1016/j.cognition.2006.05.011.

    Abstract

    The ability to explain the occurrence of errors in children’s speech is an essential component of successful theories of language acquisition. The present study tested some generativist and constructivist predictions about error on the questions produced by ten English-learning children between 2 and 5 years of age. The analyses demonstrated that, as predicted by some generativist theories [e.g. Santelmann, L., Berk, S., Austin, J., Somashekar, S. & Lust. B. (2002). Continuity and development in the acquisition of inversion in yes/no questions: dissociating movement and inflection, Journal of Child Language, 29, 813–842], questions with auxiliary DO attracted higher error rates than those with modal auxiliaries. However, in wh-questions, questions with modals and DO attracted equally high error rates, and these findings could not be explained in terms of problems forming questions with why or negated auxiliaries. It was concluded that the data might be better explained in terms of a constructivist account that suggests that entrenched item-based constructions may be protected from error in children’s speech, and that errors occur when children resort to other operations to produce questions [e.g. Dąbrowska, E. (2000). From formula to schema: the acquisition of English questions. Cognitive Liguistics, 11, 83–102; Rowland, C. F. & Pine, J. M. (2000). Subject-auxiliary inversion errors and wh-question acquisition: What children do know? Journal of Child Language, 27, 157–181; Tomasello, M. (2003). Constructing a language: A usage-based theory of language acquisition. Cambridge, MA: Harvard University Press]. However, further work on constructivist theory development is required to allow researchers to make predictions about the nature of these operations.
  • Rubio-Fernández, P. (2007). Suppression in metaphor interpretation: Differences between meaning selection and meaning construction. Journal of Semantics, 24(4), 345-371. doi:10.1093/jos/ffm006.

    Abstract

    Various accounts of metaphor interpretation propose that it involves constructing an ad hoc concept on the basis of the concept encoded by the metaphor vehicle (i.e. the expression used for conveying the metaphor). This paper discusses some of the differences between these theories and investigates their main empirical prediction: that metaphor interpretation involves enhancing properties of the metaphor vehicle that are relevant for interpretation, while suppressing those that are irrelevant. This hypothesis was tested in a cross-modal lexical priming study adapted from early studies on lexical ambiguity. The different patterns of suppression of irrelevant meanings observed in disambiguation studies and in the experiment on metaphor reported here are discussed in terms of differences between meaning selection and meaning construction.
  • De Ruiter, J. P. (2007). Postcards from the mind: The relationship between speech, imagistic gesture and thought. Gesture, 7(1), 21-38.

    Abstract

    In this paper, I compare three different assumptions about the relationship between speech, thought and gesture. These assumptions have profound consequences for theories about the representations and processing involved in gesture and speech production. I associate these assumptions with three simplified processing architectures. In the Window Architecture, gesture provides us with a 'window into the mind'. In the Language Architecture, properties of language have an influence on gesture. In the Postcard Architecture, gesture and speech are planned by a single process to become one multimodal message. The popular Window Architecture is based on the assumption that gestures come, as it were, straight out of the mind. I argue that during the creation of overt imagistic gestures, many processes, especially those related to (a) recipient design, and (b) effects of language structure, cause an observable gesture to be very different from the original thought that it expresses. The Language Architecture and the Postcard Architecture differ from the Window Architecture in that they both incorporate a central component which plans gesture and speech together, however they differ from each other in the way they align gesture and speech. The Postcard Architecture assumes that the process creating a multimodal message involving both gesture and speech has access to the concepts that are available in speech, while the Language Architecture relies on interprocess communication to resolve potential conflicts between the content of gesture and speech.
  • Salverda, A. P., Dahan, D., Tanenhaus, M. K., Crosswhite, K., Masharov, M., & McDonough, J. (2007). Effects of prosodically modulated sub-phonetic variation on lexical competition. Cognition, 105(2), 466-476. doi:10.1016/j.cognition.2006.10.008.

    Abstract

    Eye movements were monitored as participants followed spoken instructions to manipulate one of four objects pictured on a computer screen. Target words occurred in utterance-medial (e.g., Put the cap next to the square) or utterance-final position (e.g., Now click on the cap). Displays consisted of the target picture (e.g., a cap), a monosyllabic competitor picture (e.g., a cat), a polysyllabic competitor picture (e.g., a captain) and a distractor (e.g., a beaker). The relative proportion of fixations to the two types of competitor pictures changed as a function of the position of the target word in the utterance, demonstrating that lexical competition is modulated by prosodically conditioned phonetic variation.
  • Sauter, D., & Scott, S. K. (2007). More than one kind of happiness: Can we recognize vocal expressions of different positive states? Motivation and Emotion, 31(3), 192-199.

    Abstract

    Several theorists have proposed that distinctions are needed between different positive emotional states, and that these discriminations may be particularly useful in the domain of vocal signals (Ekman, 1992b, Cognition and Emotion, 6, 169–200; Scherer, 1986, Psychological Bulletin, 99, 143–165). We report an investigation into the hypothesis that positive basic emotions have distinct vocal expressions (Ekman, 1992b, Cognition and Emotion, 6, 169–200). Non-verbal vocalisations are used that map onto five putative positive emotions: Achievement/Triumph, Amusement, Contentment, Sensual Pleasure, and Relief. Data from categorisation and rating tasks indicate that each vocal expression is accurately categorised and consistently rated as expressing the intended emotion. This pattern is replicated across two language groups. These data, we conclude, provide evidence for the existence of robustly recognisable expressions of distinct positive emotions.
  • Scharenborg, O., Seneff, S., & Boves, L. (2007). A two-pass approach for handling out-of-vocabulary words in a large vocabulary recognition task. Computer, Speech & Language, 21, 206-218. doi:10.1016/j.csl.2006.03.003.

    Abstract

    This paper addresses the problem of recognizing a vocabulary of over 50,000 city names in a telephone access spoken dialogue system. We adopt a two-stage framework in which only major cities are represented in the first stage lexicon. We rely on an unknown word model encoded as a phone loop to detect OOV city names (referred to as ‘rare city’ names). We use SpeM, a tool that can extract words and word-initial cohorts from phone graphs from a large fallback lexicon, to provide an N-best list of promising city name hypotheses on the basis of the phone graph corresponding to the OOV. This N-best list is then inserted into the second stage lexicon for a subsequent recognition pass. Experiments were conducted on a set of spontaneous telephone-quality utterances; each containing one rare city name. It appeared that SpeM was able to include nearly 75% of the correct city names in an N-best hypothesis list of 3000 city names. With the names found by SpeM to extend the lexicon of the second stage recognizer, a word accuracy of 77.3% could be obtained. The best one-stage system yielded a word accuracy of 72.6%. The absolute number of correctly recognized rare city names almost doubled, from 62 for the best one-stage system to 102 for the best two-stage system. However, even the best two-stage system recognized only about one-third of the rare city names retrieved by SpeM. The paper discusses ways for improving the overall performance in the context of an application.
  • Scharenborg, O., Ten Bosch, L., & Boves, L. (2007). 'Early recognition' of polysyllabic words in continuous speech. Computer, Speech & Language, 21, 54-71. doi:10.1016/j.csl.2005.12.001.

    Abstract

    Humans are able to recognise a word before its acoustic realisation is complete. This in contrast to conventional automatic speech recognition (ASR) systems, which compute the likelihood of a number of hypothesised word sequences, and identify the words that were recognised on the basis of a trace back of the hypothesis with the highest eventual score, in order to maximise efficiency and performance. In the present paper, we present an ASR system, SpeM, based on principles known from the field of human word recognition that is able to model the human capability of ‘early recognition’ by computing word activation scores (based on negative log likelihood scores) during the speech recognition process. Experiments on 1463 polysyllabic words in 885 utterances showed that 64.0% (936) of these polysyllabic words were recognised correctly at the end of the utterance. For 81.1% of the 936 correctly recognised polysyllabic words the local word activation allowed us to identify the word before its last phone was available, and 64.1% of those words were already identified one phone after their lexical uniqueness point. We investigated two types of predictors for deciding whether a word is considered as recognised before the end of its acoustic realisation. The first type is related to the absolute and relative values of the word activation, which trade false acceptances for false rejections. The second type of predictor is related to the number of phones of the word that have already been processed and the number of phones that remain until the end of the word. The results showed that SpeM’s performance increases if the amount of acoustic evidence in support of a word increases and the risk of future mismatches decreases.
  • Scharenborg, O. (2007). Reaching over the gap: A review of efforts to link human and automatic speech recognition research. Speech Communication, 49, 336-347. doi:10.1016/j.specom.2007.01.009.

    Abstract

    The fields of human speech recognition (HSR) and automatic speech recognition (ASR) both investigate parts of the speech recognition process and have word recognition as their central issue. Although the research fields appear closely related, their aims and research methods are quite different. Despite these differences there is, however, lately a growing interest in possible cross-fertilisation. Researchers from both ASR and HSR are realising the potential benefit of looking at the research field on the other side of the ‘gap’. In this paper, we provide an overview of past and present efforts to link human and automatic speech recognition research and present an overview of the literature describing the performance difference between machines and human listeners. The focus of the paper is on the mutual benefits to be derived from establishing closer collaborations and knowledge interchange between ASR and HSR. The paper ends with an argument for more and closer collaborations between researchers of ASR and HSR to further improve research in both fields.
  • Scharenborg, O., Wan, V., & Moore, R. K. (2007). Towards capturing fine phonetic variation in speech using articulatory features. Speech Communication, 49, 811-826. doi:10.1016/j.specom.2007.01.005.

    Abstract

    The ultimate goal of our research is to develop a computational model of human speech recognition that is able to capture the effects of fine-grained acoustic variation on speech recognition behaviour. As part of this work we are investigating automatic feature classifiers that are able to create reliable and accurate transcriptions of the articulatory behaviour encoded in the acoustic speech signal. In the experiments reported here, we analysed the classification results from support vector machines (SVMs) and multilayer perceptrons (MLPs). MLPs have been widely and successfully used for the task of multi-value articulatory feature classification, while (to the best of our knowledge) SVMs have not. This paper compares the performance of the two classifiers and analyses the results in order to better understand the articulatory representations. It was found that the SVMs outperformed the MLPs for five out of the seven articulatory feature classes we investigated while using only 8.8–44.2% of the training material used for training the MLPs. The structure in the misclassifications of the SVMs and MLPs suggested that there might be a mismatch between the characteristics of the classification systems and the characteristics of the description of the AF values themselves. The analyses showed that some of the misclassified features are inherently confusable given the acoustic space. We concluded that in order to come to a feature set that can be used for a reliable and accurate automatic description of the speech signal; it could be beneficial to move away from quantised representations.
  • Schiller, N. O., Meyer, A. S., & Levelt, W. J. M. (1997). The syllabic structure of spoken words: Evidence from the syllabification of intervocalic consonants. Language and Speech, 40(2), 103-140.

    Abstract

    A series of experiments was carried out to investigate the syllable affiliation of intervocalic consonants following short vowels, long vowels, and schwa in Dutch. Special interest was paid to words such as letter ['leter] ''id.,'' where a short vowel is followed by a single consonant. On phonological grounds one may predict that the first syllable should always be closed, but earlier psycholinguistic research had shown that speakers tend to leave these syllables open. In our experiments, bisyllabic word forms were presented aurally, and participants produced their syllables in reversed order (Experiments 1 through 5), or repeated the words inserting a pause between the syllables (Experiment 6). The results showed that participants generally closed syllables with a short vowel. However, in a significant number of the cases they produced open short vowel syllables. Syllables containing schwa, like syllables with a long vowel, were hardly ever closed. Word stress, the phonetic quality of the vowel in the first syllable, and the experimental context influenced syllabification. Taken together, the experiments show that native speakers syllabify bisyllabic Dutch nouns in accordance with a small set of prosodic output constraints. To account for the variability of the results, we propose that these constraints differ in their probabilities of being applied.
  • Segurado, R., Hamshere, M. L., Glaser, B., Nikolov, I., Moskvina, V., & Holmans, P. A. (2007). Combining linkage data sets for meta-analysis and mega-analysis: the GAW15 rheumatoid arthritis data set. BMC Proceedings, 1(Suppl 1): S104.

    Abstract

    We have used the genome-wide marker genotypes from Genetic Analysis Workshop 15 Problem 2 to explore joint evidence for genetic linkage to rheumatoid arthritis across several samples. The data consisted of four high-density genome scans on samples selected for rheumatoid arthritis. We cleaned the data, removed intermarker linkage disequilibrium, and assembled the samples onto a common genetic map using genome sequence positions as a reference for map interpolation. The individual studies were combined first at the genotype level (mega-analysis) prior to a multipoint linkage analysis on the combined sample, and second using the genome scan meta-analysis method after linkage analysis of each sample. The two approaches were compared, and give strong support to the HLA locus on chromosome 6 as a susceptibility locus. Other regions of interest include loci on chromosomes 11, 2, and 12.
  • Senft, G. (1988). A grammar of Manam by Frantisek Lichtenberk [Book review]. Language and linguistics in Melanesia, 18, 169-173.
  • Senft, G. (1988). [Review of the book Functional syntax: Anaphora, discourse and empathy by Susumu Kuno]. Journal of Pragmatics, 12, 396-399. doi:10.1016/0378-2166(88)90040-9.
  • Senft, G. (1997). [Review of the book The design of language: An introduction to descriptive linguistics by Terry Crowley, John Lynch, Jeff Siegel, and Julie Piau]. Linguistics, 35, 781-785.
  • Senft, G. (2007). [Review of the book Bislama reference grammar by Terry Crowley]. Linguistics, 45(1), 235-239.
  • Senft, G. (2007). [Review of the book Serial verb constructions - A cross-linguistic typology by Alexandra Y. Aikhenvald and Robert M. W. Dixon]. Linguistics, 45(4), 833-840. doi:10.1515/LING.2007.024.
  • Senft, G. (1997). Magical conversation on the Trobriand Islands. Anthropos, 92, 369-391.
  • Senft, G. (1987). Kilivila color terms. Studies in Language, 11, 313-346.
  • Senft, G. (1987). Nanam'sa Bwena - Gutes Denken: Eine ethnolinguistische Fallstudie über eine Dorfversammlung auf den Trobriand Inseln. Zeitschrift für Ethnologie, 112, 181-222.
  • Senft, G. (1987). Rituelle Kommunikation auf den Trobriand Inseln. Zeitschrift für Literaturwissenschaft und Linguistik, 65, 105-130.
  • Senft, G. (1987). The system of classificatory particles in Kilivila reconsidered: First results on its inventory, its acquisition, and its usage. Language and Linguistics in Melanesia, 16, 100-125.
  • Seuren, P. A. M. (2007). The theory that dare not speak its name: A rejoinder to Mufwene and Francis. Language Sciences, 29(4), 571-573. doi:10.1016/j.langsci.2007.02.001.
  • Seuren, P. A. M. (1987). A note on siki. Journal of Pidgin and Creole Languages, 2(1), 57-62. doi:10.1075/jpcl.2.1.07pie.
  • Seuren, P. A. M. (1982). De spellingsproblematiek in Suriname: Een inleiding. OSO, 1(1), 71-79.
  • Seuren, P. A. M. (1988). [Review of the book Pidgin and Creole linguistics by P. Mühlhäusler]. Studies in Language, 12(2), 504-513.
  • Seuren, P. A. M. (1997). [Review of the book Schets van de Nederlandse Taal. Grammatica, poëtica en retorica by Adriaen Verwer, Naar de editie van E. van Driel (1783) vertaald door J. Knol. Ed. Th.A.J.M. Janssen & J. Noordegraaf]. Nederlandse Taalkunde, 4, 370-374.
  • Seuren, P. A. M. (1988). [Review of the Collins Cobuild English Language Dictionary (Collins Birmingham University International Language Database)]. Journal of Semantics, 6, 169-174. doi:10.1093/jos/6.1.169.
  • Seuren, P. A. M. (1987). How relevant?: A commentary on Sperber and Wilson "Précis of relevance: Communication and cognition'. Behavioral and Brain Sciences, 10, 731-733. doi:10.1017/S0140525X00055564.
  • Seuren, P. A. M. (1987). Les paradoxes et le langage. Logique et Analyse, 30(120), 365-383.
  • Seuren, P. A. M. (1982). Internal variability in competence. Linguistische Berichte, 77, 1-31.
  • Seuren, P. A. M. (1989). Neue Entwicklungen im Wahrheitsbegriff. Studia Leibnitiana, 21(2), 155-173.
  • Seuren, P. A. M. (1988). Presupposition and negation. Journal of Semantics, 6(3/4), 175-226. doi:10.1093/jos/6.1.175.

    Abstract

    This paper is an attempt to show that given the available observations on the behaviour of negation and presuppositions there is no simpler explanation than to assume that natural language has two distinct negation operators, the minimal negation which preserves presuppositions and the radical negation which does not. The three-valued logic emerging from this distinction, and especially its model-theory, are discussed in detail. It is, however, stressed that the logic itself is only epiphenomenal on the structures and processes involved in the interpretation of sentences. Horn (1985) brings new observations to bear, related with metalinguistic uses of negation, and proposes a “pragmatic” ambiguity in negation to the effect that in descriptive (or “straight”) use negation is the classical bivalent operator, whereas in metalinguistic use it is non-truthfunctional but only pragmatic. Van der Sandt (to appear) accepts Horn's observations but proposes a different solution: he proposes an ambiguity in the argument clause of the negation operator (which, for him, too, is classical and bivalent), according to whether the negation takes only the strictly asserted proposition or covers also the presuppositions, the (scalar) implicatures and other implications (in particular of style and register) of the sentence expressing that proposition. These theories are discussed at some length. The three-valued analysis is defended on the basis of partly new observations, which do not seem to fit either Horn's or Van der Sandt's solution. It is then placed in the context of incremental discourse semantics, where both negations are seen to do the job of keeping increments out of the discourse domain, though each does so in its own specific way. The metalinguistic character of the radical negation is accounted for in terms of the incremental apparatus. The metalinguistic use of negation in denials of implicatures or implications of style and register is regarded as a particular form of minimal negation, where the negation denies not the proposition itself but the appropriateness of the use of an expression in it. This appropriateness negation is truth-functional and not pragmatic, but it applies to a particular, independently motivated, analysis of the argument clause. The ambiguity of negation in natural language is different from the ordinary type of ambiguity found in the lexicon. Normally, lexical ambiguities are idiosyncratic, highly contingent, and unpredictable from language to language. In the case of negation, however, the two meanings are closely related, both truth-conditionally and incrementally. Moreover, the mechanism of discourse incrementation automatically selects the right meaning. These properties are taken to provide a sufficient basis for discarding the, otherwise valid, objection that negation is unlikely to be ambiguous because no known language makes a lexical distinction between the two readings.
  • Shopen, T., Reid, N., Shopen, G., & Wilkins, D. G. (1997). Ensuring the survival of Aboriginal and Torres Strait islander languages into the 21st century. Australian Review of Applied Linguistics, 10(1), 143-157.

    Abstract

    Aboriginal languages threatened by speakers poor economic and social conditions; some may survive through support for community development, language maintenance, bilingual education and training of Aboriginal teachers and linguists, and nonAboriginal teachers of Aboriginal and Islander students.
  • Slobin, D. I., & Bowerman, M. (2007). Interfaces between linguistic typology and child language research. Linguistic Typology, 11(1), 213-226. doi:10.1515/LINGTY.2007.015.
  • Smith, M. R., Cutler, A., Butterfield, S., & Nimmo-Smith, I. (1989). The perception of rhythm and word boundaries in noise-masked speech. Journal of Speech and Hearing Research, 32, 912-920.

    Abstract

    The present experiment tested the suggestion that human listeners may exploit durational information in speech to parse continuous utterances into words. Listeners were presented with six-syllable unpredictable utterances under noise-masking, and were required to judge between alternative word strings as to which best matched the rhythm of the masked utterances. For each utterance there were four alternative strings: (a) an exact rhythmic and word boundary match, (b) a rhythmic mismatch, and (c) two utterances with the same rhythm as the masked utterance, but different word boundary locations. Listeners were clearly able to perceive the rhythm of the masked utterances: The rhythmic mismatch was chosen significantly less often than any other alternative. Within the three rhythmically matched alternatives, the exact match was chosen significantly more often than either word boundary mismatch. Thus, listeners both perceived speech rhythm and used durational cues effectively to locate the position of word boundaries.
  • Snijders, T. M., Kooijman, V., Cutler, A., & Hagoort, P. (2007). Neurophysiological evidence of delayed segmentation in a foreign language. Brain Research, 1178, 106-113. doi:10.1016/j.brainres.2007.07.080.

    Abstract

    Previous studies have shown that segmentation skills are language-specific, making it difficult to segment continuous speech in an unfamiliar language into its component words. Here we present the first study capturing the delay in segmentation and recognition in the foreign listener using ERPs. We compared the ability of Dutch adults and of English adults without knowledge of Dutch (‘foreign listeners’) to segment familiarized words from continuous Dutch speech. We used the known effect of repetition on the event-related potential (ERP) as an index of recognition of words in continuous speech. Our results show that word repetitions in isolation are recognized with equivalent facility by native and foreign listeners, but word repetitions in continuous speech are not. First, words familiarized in isolation are recognized faster by native than by foreign listeners when they are repeated in continuous speech. Second, when words that have previously been heard only in a continuous-speech context re-occur in continuous speech, the repetition is detected by native listeners, but is not detected by foreign listeners. A preceding speech context facilitates word recognition for native listeners, but delays or even inhibits word recognition for foreign listeners. We propose that the apparent difference in segmentation rate between native and foreign listeners is grounded in the difference in language-specific skills available to the listeners.
  • Snowdon, C. T., & Cronin, K. A. (2007). Cooperative breeders do cooperate. Behavioural Processes, 76, 138-141. doi:10.1016/j.beproc.2007.01.016.

    Abstract

    Bergmuller et al. (2007) make an important contribution to studies of cooperative breeding and provide a theoretical basis for linking the evolution of cooperative breeding with cooperative behavior.We have long been involved in empirical research on the only family of nonhuman primates to exhibit cooperative breeding, the Callitrichidae, which includes marmosets and tamarins, with studies in both field and captive contexts. In this paper we expand on three themes from Bergm¨uller et al. (2007) with empirical data. First we provide data in support of the importance of helpers and the specific benefits that helpers can gain in terms of fitness. Second, we suggest that mechanisms of rewarding helpers are more common and more effective in maintaining cooperative breeding than punishments. Third, we present a summary of our own research on cooperative behavior in cotton-top tamarins (Saguinus oedipus) where we find greater success in cooperative problem solving than has been reported for non-cooperatively breeding species.
  • Spiteri, E., Konopka, G., Coppola, G., Bomar, J., Oldham, M., Ou, J., Vernes, S. C., Fisher, S. E., Ren, B., & Geschwind, D. (2007). Identification of the transcriptional targets of FOXP2, a gene linked to speech and language, in developing human brain. American Journal of Human Genetics, 81(6), 1144-1157. doi:10.1086/522237.

    Abstract

    Mutations in FOXP2, a member of the forkhead family of transcription factor genes, are the only known cause of developmental speech and language disorders in humans. To date, there are no known targets of human FOXP2 in the nervous system. The identification of FOXP2 targets in the developing human brain, therefore, provides a unique tool with which to explore the development of human language and speech. Here, we define FOXP2 targets in human basal ganglia (BG) and inferior frontal cortex (IFC) by use of chromatin immunoprecipitation followed by microarray analysis (ChIP-chip) and validate the functional regulation of targets in vitro. ChIP-chip identified 285 FOXP2 targets in fetal human brain; statistically significant overlap of targets in BG and IFC indicates a core set of 34 transcriptional targets of FOXP2. We identified targets specific to IFC or BG that were not observed in lung, suggesting important regional and tissue differences in FOXP2 activity. Many target genes are known to play critical roles in specific aspects of central nervous system patterning or development, such as neurite outgrowth, as well as plasticity. Subsets of the FOXP2 transcriptional targets are either under positive selection in humans or differentially expressed between human and chimpanzee brain. This is the first ChIP-chip study to use human brain tissue, making the FOXP2-target genes identified in these studies important to understanding the pathways regulating speech and language in the developing human brain. These data provide the first insight into the functional network of genes directly regulated by FOXP2 in human brain and by evolutionary comparisons, highlighting genes likely to be involved in the development of human higher-order cognitive processes.
  • Stewart, A., Holler, J., & Kidd, E. (2007). Shallow processing of ambiguous pronouns: Evidence for delay. Quarterly Journal of Experimental Psychology, 60, 1680-1696. doi:10.1080/17470210601160807.
  • Stivers, T., & Majid, A. (2007). Questioning children: Interactional evidence of implicit bias in medical interviews. Social Psychology Quarterly, 70(4), 424-441.

    Abstract

    Social psychologists have shown experimentally that implicit race bias can influence an individual's behavior. Implicit bias has been suggested to be more subtle and less subject to cognitive control than more explicit forms of racial prejudice. Little is known about how implicit bias is manifest in naturally occurring social interaction. This study examines the factors associated with physicians selecting children rather than parents to answer questions in pediatric interviews about routine childhood illnesses. Analysis of the data using a Generalized Linear Latent and Mixed Model demonstrates a significant effect of parent race and education on whether physicians select children to answer questions. Black children and Latino children of low-education parents are less likely to be selected to answer questions than their same aged white peers irrespective of education. One way that implicit bias manifests itself in naturally occurring interaction may be through the process of speaker selection during questioning.
  • Suomi, K., McQueen, J. M., & Cutler, A. (1997). Vowel harmony and speech segmentation in Finnish. Journal of Memory and Language, 36, 422-444. doi:10.1006/jmla.1996.2495.

    Abstract

    Finnish vowel harmony rules require that if the vowel in the first syllable of a word belongs to one of two vowel sets, then all subsequent vowels in that word must belong either to the same set or to a neutral set. A harmony mismatch between two syllables containing vowels from the opposing sets thus signals a likely word boundary. We report five experiments showing that Finnish listeners can exploit this information in an on-line speech segmentation task. Listeners found it easier to detect words likehymyat the end of the nonsense stringpuhymy(where there is a harmony mismatch between the first two syllables) than in the stringpyhymy(where there is no mismatch). There was no such effect, however, when the target words appeared at the beginning of the nonsense string (e.g.,hymypuvshymypy). Stronger harmony effects were found for targets containing front harmony vowels (e.g.,hymy) than for targets containing back harmony vowels (e.g.,paloinkypaloandkupalo). The same pattern of results appeared whether target position within the string was predictable or unpredictable. Harmony mismatch thus appears to provide a useful segmentation cue for the detection of word onsets in Finnish speech.
  • Swaab, T. Y., Brown, C. M., & Hagoort, P. (1997). Spoken sentence comprehension in aphasia: Event-related potential evidence for a lexical integration deficit. Journal of Cognitive Neuroscience, 9(1), 39-66.

    Abstract

    In this study the N400 component of the event-related potential was used to investigate spoken sentence understanding in Broca's and Wernicke's aphasics. The aim of the study was to determine whether spoken sentence comprehension problems in these patients might result from a deficit in the on-line integration of lexical information. Subjects listened to sentences spoken at a normal rate. In half of these sentences, the meaning of the final word of the sentence matched the semantic specifications of the preceding sentence context. In the other half of the sentences, the sentence-final word was anomalous with respect to the preceding sentence context. The N400 was measured to the sentence-final words in both conditions. The results for the aphasic patients (n = 14) were analyzed according to the severity of their comprehension deficit and compared to a group of 12 neurologically unimpaired age-matched controls, as well as a group of 6 nonaphasic patients with a lesion in the right hemisphere. The nonaphasic brain damaged patients and the aphasic patients with a light comprehension deficit (high comprehenders, n = 7) showed an N400 effect that was comparable to that of the neurologically unimpaired subjects. In the aphasic patients with a moderate to severe comprehension deficit (low comprehenders, n = 7), a reduction and delay of the N400 effect was obtained. In addition, the P300 component was measured in a classical oddball paradigm, in which subjects were asked to count infrequent low tones in a random series of high and low tones. No correlation was found between the occurrence of N400 and P300 effects, indicating that changes in the N400 results were related to the patients' language deficit. Overall, the pattern of results was compatible with the idea that aphasic patients with moderate to severe comprehension problems are impaired in the integration of lexical information into a higher order representation of the preceding sentence context.
  • Swingley, D., & Aslin, R. N. (2007). Lexical competition in young children's word learning. Cognitive Psychology, 54(2), 99-132.

    Abstract

    In two experiments, 1.5-year-olds were taught novel words whose sound patterns were phonologically similar to familiar words (novel neighbors) or were not (novel nonneighbors). Learning was tested using a picture-fixation task. In both experiments, children learned the novel nonneighbors but not the novel neighbors. In addition, exposure to the novel neighbors impaired recognition performance on familiar neighbors. Finally, children did not spontaneously use phonological differences to infer that a novel word referred to a novel object. Thus, lexical competition—inhibitory interaction among words in speech comprehension—can prevent children from using their full phonological sensitivity in judging words as novel. These results suggest that word learning in young children, as in adults, relies not only on the discrimination and identification of phonetic categories, but also on evaluating the likelihood that an utterance conveys a new word.
  • Swingley, D. (2007). Lexical exposure and word-from encoding in 1.5-year-olds. Developmental Psychology, 43(2), 454-464. doi:10.1037/0012-1649.43.2.454.

    Abstract

    In this study, 1.5-year-olds were taught a novel word. Some children were familiarized with the word's phonological form before learning the word's meaning. Fidelity of phonological encoding was tested in a picture-fixation task using correctly pronounced and mispronounced stimuli. Only children with additional exposure in familiarization showed reduced recognition performance given slight mispronunciations relative to correct pronunciations; children with fewer exposures did not. Mathematical modeling of vocabulary exposure indicated that children may hear thousands of words frequently enough for accurate encoding. The results provide evidence compatible with partial failure of phonological encoding at 19 months of age, demonstrate that this limitation in learning does not always hinder word recognition, and show the value of infants' word-form encoding in early lexical development.
  • Takashima, A., Nieuwenhuis, I. L. C., Rijpkema, M., Petersson, K. M., Jensen, O., & Fernández, G. (2007). Memory trace stabilization leads to large-scale changes in the retrieval network: A functional MRI study on associative memory. Learning & Memory, 14, 472-479. doi:10.1101/lm.605607.

    Abstract

    Spaced learning with time to consolidate leads to more stabile memory traces. However, little is known about the neural correlates of trace stabilization, especially in humans. The present fMRI study contrasted retrieval activity of two well-learned sets of face-location associations, one learned in a massed style and tested on the day of learning (i.e., labile condition) and another learned in a spaced scheme over the course of one week (i.e., stabilized condition). Both sets of associations were retrieved equally well, but the retrieval of stabilized association was faster and accompanied by large-scale changes in the network supporting retrieval. Cued recall of stabilized as compared with labile associations was accompanied by increased activity in the precuneus, the ventromedial prefrontal cortex, the bilateral temporal pole, and left temporo–parietal junction. Conversely, memory representational areas such as the fusiform gyrus for faces and the posterior parietal cortex for locations did not change their activity with stabilization. The changes in activation in the precuneus, which also showed increased connectivity with the fusiform area, are likely to be related to the spatial nature of our task. The activation increase in the ventromedial prefrontal cortex, on the other hand, might reflect a general function in stabilized memory retrieval. This area might succeed the hippocampus in linking distributed neocortical representations.
  • Tendolkar, I., Arnold, J., Petersson, K. M., Weis, S., Brockhaus-Dumke, A., Van Eijndhoven, P., Buitelaar, J., & Fernández, G. (2007). Probing the neural correlates of associative memory formation: A parametrically analyzed event-related functional MRI study. Brain Research, 1142, 159-168. doi:10.1016/j.brainres.2007.01.040.

    Abstract

    The medial temporal lobe (MTL) is crucial for declarative memory formation, but the function of its subcomponents in associative memory formation remains controversial. Most functional imaging studies on this topic are based on a stepwise approach comparing a condition with and one without associative encoding. Extending this approach we applied additionally a parametric analysis by varying the amount of associative memory formation. We found a hippocampal subsequent memory effect of almost similar magnitude regardless of the amount of associations formed. By contrast, subsequent memory effects in rhinal and parahippocampal cortices were parametrically and positively modulated by the amount of associations formed. Our results indicate that the parahippocampal region supports associative memory formation as tested here and the hippocampus adds a general mnemonic operation. This pattern of results might suggest a new interpretation. Instead of having either a fixed division of labor between the hippocampus (associative memory formation) and the rhinal cortex (non-associative memory formation) or a functionally unitary MTL system, in which all substructures are contributing to memory formation in a similar way, we propose that the location where associations are formed within the MTL depends on the kind of associations bound: If visual single-dimension associations, as used here, can already be integrated within the parahippocampal region, the hippocampus might add a general purpose mnemonic operation only. In contrast, if associations have to be formed across widely distributed neocortical representations, the hippocampus may provide a binding operation in order to establish a coherent memory.
  • Terrill, A. (2007). [Review of ‘Andrew Pawley, Robert Attenborough, Jack Golson, and Robin Hide, eds. 2005. Papuan pasts: Cultural, linguistic and biological histories of Papuan-speaking people]. Oceanic Linguistics, 46(1), 313-321. doi:10.1353/ol.2007.0025.
  • Tomasello, M., Carpenter, M., & Liszkowski, U. (2007). A new look at infant pointing. Child Development, 78, 705-722. doi:10.1111/j.1467-8624.2007.01025.x.

    Abstract

    The current article proposes a new theory of infant pointing involving multiple layers of intentionality and shared intentionality. In the context of this theory, evidence is presented for a rich interpretation of prelinguistic communication, that is, one that posits that when 12-month-old infants point for an adult they are in some sense trying to influence her mental states. Moreover, evidence is also presented for a deeply social view in which infant pointing is best understood—on many levels and in many ways—as depending on uniquely human skills and motivations for cooperation and shared intentionality (e.g., joint intentions and attention with others). Children's early linguistic skills are built on this already existing platform of prelinguistic communication.
  • Van Wijk, C., & Kempen, G. (1987). A dual system for producing self-repairs in spontaneous speech: Evidence from experimentally elicited corrections. Cognitive Psychology, 19, 403-440. doi:10.1016/0010-0285(87)90014-4.

    Abstract

    This paper presents a cognitive theory on the production and shaping of selfrepairs during speaking. In an extensive experimental study, a new technique is tried out: artificial elicitation of self-repairs. The data clearly indicate that two mechanisms for computing the shape of self-repairs should be distinguished. One is based on the repair strategy called reformulation, the second one on lemma substitution. W. Levelt’s (1983, Cognition, 14, 41- 104) well-formedness rule, which connects self-repairs to coordinate structures, is shown to apply only to reformulations. In case of lemma substitution, a totally different set of rules is at work. The linguistic unit of central importance in reformulations is the major syntactic constituent; in lemma substitutions it is a prosodic unit. the phonological phrase. A parametrization of the model yielded a very satisfactory fit between observed and reconstructed scores.
  • Van Wijk, C., & Kempen, G. (1982). De ontwikkeling van syntactische formuleervaardigheid bij kinderen van 9 tot 16 jaar. Nederlands Tijdschrift voor de Psychologie en haar Grensgebieden, 37(8), 491-509.

    Abstract

    An essential phenomenon in the development towards syntactic maturity after early childhood is the increasing use of so-called sentence-combining transformations. Especially by using subordination, complex sentences are produced. The research reported here is an attempt to arrive at a more adequate characterization and explanation. Our starting point was an analysis of 280 texts written by Dutch-speaking pupils of the two highest grades of the primary school and the four lowest grades of three different types of secondary education. It was examined whether systematic shifts in the use of certain groups of so-called function words could be traced. We concluded that the development of the syntactic formulating ability can be characterized as an increase in connectivity: the use of all kinds of function words which explicitly mark logico-semantic relations between propositions. This development starts by inserting special adverbs and coordinating conjunctions resulting in various types of coordination. In a later stage, the syntactic patterning of the sentence is affected as well (various types of subordination). The increase in sentence complexity is only one aspect of the entire development. An explanation for the increase in connectivity is offered based upon a distinction between narrative and expository language use. The latter, but not the former, is characterized by frequent occurrence of connectives. The development in syntactic formulating ability includes a high level of skill in expository language use. Speed of development is determined by intensity of training, e.g. in scholastic and occupational settings.
  • Van Turennout, M., Hagoort, P., & Brown, C. M. (1997). Electrophysiological evidence on the time course of semantic and phonological processes in speech production. Journal of Experimental Psychology: Learning, Memory, and Cognition, 23(4), 787-806.

    Abstract

    The temporal properties of semantic and phonological processes in speech production were investigated in a new experimental paradigm using movement-related brain potentials. The main experimental task was picture naming. In addition, a 2-choice reaction go/no-go procedure was included, involving a semantic and a phonological categorization of the picture name. Lateralized readiness potentials (LRPs) were derived to test whether semantic and phonological information activated motor processes at separate moments in time. An LRP was only observed on no-go trials when the semantic (not the phonological) decision determined the response hand. Varying the position of the critical phoneme in the picture name did not affect the onset of the LRP but rather influenced when the LRP began to differ on go and no-go trials and allowed the duration of phonological encoding of a word to be estimated. These results provide electrophysiological evidence for early semantic activation and later phonological encoding.
  • Van Berkum, J. J. A., Koornneef, A. W., Otten, M., & Nieuwland, M. S. (2007). Establishing reference in language comprehension: An electrophysiological perspective. Brain Research, 1146, 158-171. doi:10.1016/j.brainres.2006.06.091.

    Abstract

    The electrophysiology of language comprehension has long been dominated by research on syntactic and semantic integration. However, to understand expressions like "he did it" or "the little girl", combining word meanings in accordance with semantic and syntactic constraints is not enough--readers and listeners also need to work out what or who is being referred to. We review our event-related brain potential research on the processes involved in establishing reference, and present a new experiment in which we examine when and how the implicit causality associated with specific interpersonal verbs affects the interpretation of a referentially ambiguous pronoun. The evidence suggests that upon encountering a singular noun or pronoun, readers and listeners immediately inspect their situation model for a suitable discourse entity, such that they can discriminate between having too many, too few, or exactly the right number of referents within at most half a second. Furthermore, our implicit causality findings indicate that a fragment like "David praised Linda because..." can immediately foreground a particular referent, to the extent that a subsequent "he" is at least initially construed as a syntactic error. In all, our brain potential findings suggest that referential processing is highly incremental, and not necessarily contingent upon the syntax. In addition, they demonstrate that we can use ERPs to relatively selectively keep track of how readers and listeners establish reference.
  • Van Wingen, G., Van Broekhoven, F., Verkes, R. J., Petersson, K. M., Bäckström, T., Buitelaar, J., & Fernández, G. (2007). How progesterone impairs memory for biologically salient stimuli in healthy young women. Journal of Neuroscience, 27(42), 11416-11423. doi:10.1523/JNEUROSCI.1715-07.2007.

    Abstract

    Progesterone, or rather its neuroactive metabolite allopregnanolone, modulates amygdala activity and thereby influences anxiety. Cognition and, in particular, memory are also altered by allopregnanolone. In the present study, we investigated whether allopregnanolone modulates memory for biologically salient stimuli by influencing amygdala activity, which in turn may affect neural processes in other brain regions. A single progesterone dose was administered orally to healthy young women in a double-blind, placebo-controlled, crossover design, and participants were asked to memorize and recognize faces while undergoing functional magnetic resonance imaging. Progesterone decreased recognition accuracy without affecting reaction times. The imaging results show that the amygdala, hippocampus, and fusiform gyrus supported memory formation. Importantly, progesterone decreased responses to faces in the amygdala and fusiform gyrus duringmemoryencoding, whereas it increased hippocampal responses. The progesterone-induced decrease in neural activity in the amygdala and fusiform gyrus predicted the decrease in memory performance across subjects. However, progesterone did not modulate the differential activation between subsequently remembered and subsequently forgotten faces in these areas. A similar pattern of results was observed in the fusiform gyrus and prefrontal cortex during memory retrieval. These results suggest that allopregnanolone impairs memory by reducing the recruitment of those brain regions that support memory formation and retrieval. Given the important role of the amygdala in the modulation of memory, these results suggest that allopregnanolone alters memory by influencing amygdala activity, which in turn may affect memory processes in other brain regions
  • Van Valin Jr., R. D. (2007). Some thoughts on the reason for the lesser status of typology in the USA as opposed to Europe. Linguistic Typology, 11(1), 253-257. doi:10.1515/LINGTY.2007.019.

    Abstract

    This article addresses the issue of the different status that typology has in American linguistics as opposed to European linguistics. The historical roots of the difference lie in both structural and generative linguistics, in the contrasts between post-Bloomfieldian structuralism in the US vs. Praguean structuralism in Europe, and in the extent of the influence of generative grammar on the two continents.
  • Van Berkum, J. J. A. (1997). Syntactic processes in speech production: The retrieval of grammatical gender. Cognition, 64(2), 115-152. doi:10.1016/S0010-0277(97)00026-7.

    Abstract

    Jescheniak and Levelt (Jescheniak, J.-D., Levelt, W.J.M. 1994. Journal of Experimental Psychology: Learning, Memory and Cognition 20 (4), 824–843) have suggested that the speed with which native speakers of a gender-marking language retrieve the grammatical gender of a noun from their mental lexicon may depend on the recency of earlier access to that same noun's gender, as the result of a mechanism that is dedicated to facilitate gender-marked anaphoric reference to recently introduced discourse entities. This hypothesis was tested in two picture naming experiments. Recent gender access did not facilitate the production of gender-marked adjective noun phrases (Experiment 1), nor that of gender-marked definite article noun phrases (Experiment 2), even though naming times for the latter utterances were sensitive to the gender of a written distractor word superimposed on the picture to be named. This last result replicates and extends earlier gender-specific picture-word interference results (Schriefers, H. 1993. Journal of Experimental Psychology: Learning, Memory, and Cognition 19 (4), 841–850), showing that one can selectively tap into the production of grammatical gender agreement during speaking. The findings are relevant to theories of speech production and the representation of grammatical gender for that process.
  • Van Wijk, C., & Kempen, G. (1982). Syntactische formuleervaardigheid en het schrijven van opstellen. Pedagogische Studiën, 59, 126-136.

    Abstract

    Meermalen is getracht om syntactische formuleenuuirdigheid direct en objectief te meten aan de hand van gesproken of geschreven teksten. Uitgangspunt hierbij vormde in de regel de syntactische complexiteit van de geproduceerde taaluitingen. Dit heeft echter niet geleid tot een plausibele, duidelijk omschreven en praktisch bruikbare index. N.a.v. een kritische bespreking van de notie complexiteit wordt in dit artikel als nieuw criterium voorgesteld de connectiviteit van de taaluitingen; de expliciete aanduiding van logiscli-scmantische relaties tussen proposities. Connectiviteit is gemakkelijk scoorbaar aan de hand van functiewoorden die verschillende vormen van nevenschikkend en onderschikkend zinsverband markeren. Deze nieuwe index ondetrangt de kritiek die op complexiteit gegeven kon worden, blijkt duidelijk te discrimineren tussen groepen leerlingen die van elkaar verschillen naar leeftijd en opleidingsniveau, en sluit aan bij recente taalpsychologische en sociolinguïstische theorie. Tot besluit worden enige onderwijskundige implicaties aangegeven.
  • Van Uytvanck, D., Dukers, A., Ringersma, J., & Wittenburg, P. (2007). Using Google Earth to access language resources. Language Archive Newsletter, (9), 4-7.

    Abstract

    Over the past ten years Geographic Information Systems (GIS) have evolved from a highly specialised niche technology to one that is used daily by a wide range of people. This article describes geographic browsing of language archives, which provides intuitive exploration of resources and permits integration and correlation of information from different archives, even across different research disciplines. In order to facilitate both exploration and management of resources, digital language archives are organised according to criteria such as language name, research topic, project information, researchers, countries, or genres. A set of such criteria can form a tree-like classification scheme, such as in the MPI-IMDI archive, which in turn forms the main method of searching and querying the archive resources. Searching for information can be difficult for occasional users because effective use of these search-fields typically requires specialised knowledge. We assume that many non-specialist users of language resources will search by language name, language family, or geographic area, so that geographic navigation would offer a very powerful search method. We also assume that such users are familiar with maps, and that geographic browsing is more intuitive than browsing classification trees, so these users would prefer to start with a large scale map and then zoom in to find the data that interests them. Therefore, classification trees and geographic maps provide complementary methods for accessing language resources to meet the needs of different user groups. We selected Google Earth (GE) as a geographic browsing system and overlaid it with linguistic information. GE was chosen because it is available via the web, it has good navigation controls, it is familiar to many web users, and because the overlaid linguistic information can be formulated in XML, making it comparatively easy to interchange with other geographic systems.
  • Vernes, S. C., Spiteri, E., Nicod, J., Groszer, M., Taylor, J. M., Davies, K. E., Geschwind, D., & Fisher, S. E. (2007). High-throughput analysis of promoter occupancy reveals direct neural targets of FOXP2, a gene mutated in speech and language disorders. American Journal of Human Genetics, 81(6), 1232-1250. doi:10.1086/522238.

    Abstract

    We previously discovered that mutations of the human FOXP2 gene cause a monogenic communication disorder, primarily characterized by difficulties in learning to make coordinated sequences of articulatory gestures that underlie speech. Affected people have deficits in expressive and receptive linguistic processing and display structural and/or functional abnormalities in cortical and subcortical brain regions. FOXP2 provides a unique window into neural processes involved in speech and language. In particular, its role as a transcription factor gene offers powerful functional genomic routes for dissecting critical neurogenetic mechanisms. Here, we employ chromatin immunoprecipitation coupled with promoter microarrays (ChIP-chip) to successfully identify genomic sites that are directly bound by FOXP2 protein in native chromatin of human neuron-like cells. We focus on a subset of downstream targets identified by this approach, showing that altered FOXP2 levels yield significant changes in expression in our cell-based models and that FOXP2 binds in a specific manner to consensus sites within the relevant promoters. Moreover, we demonstrate significant quantitative differences in target expression in embryonic brains of mutant mice, mediated by specific in vivo Foxp2-chromatin interactions. This work represents the first identification and in vivo verification of neural targets regulated by FOXP2. Our data indicate that FOXP2 has dual functionality, acting to either repress or activate gene expression at occupied promoters. The identified targets suggest roles in modulating synaptic plasticity, neurodevelopment, neurotransmission, and axon guidance and represent novel entry points into in vivo pathways that may be disturbed in speech and language disorders.
  • Vonk, W., & Cozijn, R. (2007). Psycholinguïstiek: Een kwantitatieve wetenschap. Tijdschrift voor Nederlandse Taal- en Letterkunde, 123, 55-69.
  • Wassenaar, M., & Hagoort, P. (2007). Thematic role assignment in patients with Broca's aphasia: Sentence-picture matching electrified. Neuropsychologia, 45(4), 716-740. doi:10.1016/j.neuropsychologia.2006.08.016.

    Abstract

    An event-related brain potential experiment was carried out to investigate on-line thematic role assignment during sentence–picture matching in patients with Broca's aphasia. Subjects were presented with a picture that was followed by an auditory sentence. The sentence either matched the picture or mismatched the visual information depicted. Sentences differed in complexity, and ranged from simple active semantically irreversible sentences to passive semantically reversible sentences. ERPs were recorded while subjects were engaged in sentence–picture matching. In addition, reaction time and accuracy were measured. Three groups of subjects were tested: Broca patients (N = 10), non-aphasic patients with a right hemisphere (RH) lesion (N = 8), and healthy aged-matched controls (N = 15). The results of this study showed that, in neurologically unimpaired individuals, thematic role assignment in the context of visual information was an immediate process. This in contrast to patients with Broca's aphasia who demonstrated no signs of on-line sensitivity to the picture–sentence mismatches. The syntactic contribution to the thematic role assignment process seemed to be diminished given the reduction and even absence of P600 effects. Nevertheless, Broca patients showed some off-line behavioral sensitivity to the sentence–picture mismatches. The long response latencies of Broca's aphasics make it likely that off-line response strategies were used.
  • Wassenaar, M., Hagoort, P., & Brown, C. M. (1997). Syntactic ERP effects in Broca's aphasics with agrammatic comprehension. Brain and Language, 60, 61-64. doi:10.1006/brln.1997.1911.
  • Willems, R. M., Ozyurek, A., & Hagoort, P. (2007). When language meets action: The neural integration of gesture and speech. Cerebral Cortex, 17(10), 2322-2333. doi:10.1093/cercor/bhl141.

    Abstract

    Although generally studied in isolation, language and action often co-occur in everyday life. Here we investigated one particular form of simultaneous language and action, namely speech and gestures that speakers use in everyday communication. In a functional magnetic resonance imaging study, we identified the neural networks involved in the integration of semantic information from speech and gestures. Verbal and/or gestural content could be integrated easily or less easily with the content of the preceding part of speech. Premotor areas involved in action observation (Brodmann area [BA] 6) were found to be specifically modulated by action information "mismatching" to a language context. Importantly, an increase in integration load of both verbal and gestural information into prior speech context activated Broca's area and adjacent cortex (BA 45/47). A classical language area, Broca's area, is not only recruited for language-internal processing but also when action observation is integrated with speech. These findings provide direct evidence that action and language processing share a high-level neural integration system.
  • Willems, R. M., & Hagoort, P. (2007). Neural evidence for the interplay between language, gesture, and action: A review. Brain and Language, 101(3), 278-289. doi:10.1016/j.bandl.2007.03.004.

    Abstract

    Co-speech gestures embody a form of manual action that is tightly coupled to the language system. As such, the co-occurrence of speech and co-speech gestures is an excellent example of the interplay between language and action. There are, however, other ways in which language and action can be thought of as closely related. In this paper we will give an overview of studies in cognitive neuroscience that examine the neural underpinnings of links between language and action. Topics include neurocognitive studies of motor representations of speech sounds, action-related language, sign language and co-speech gestures. It will be concluded that there is strong evidence on the interaction between speech and gestures in the brain. This interaction however shares general properties with other domains in which there is interplay between language and action.
  • Willems, R. M. (2007). The neural construction of a Tinkertoy [‘Journal club’ review]. The Journal of Neuroscience, 27, 1509-1510. doi:10.1523/JNEUROSCI.0005-07.2007.
  • Womelsdorf, T., Schoffelen, J.-M., Oostenveld, R., Singer, W., Desimone, R., Engel, A. K., & Fries, P. (2007). Modulation of neuronal interactions through neuronal synchronization. Science, 316, 1609-1612. doi:10.1126/science.1139597.

    Abstract

    Brain processing depends on the interactions between neuronal groups. Those interactions are governed by the pattern of anatomical connections and by yet unknown mechanisms that modulate the effective strength of a given connection. We found that the mutual influence among neuronal groups depends on the phase relation between rhythmic activities within the groups. Phase relations supporting interactions between the groups preceded those interactions by a few milliseconds, consistent with a mechanistic role. These effects were specific in time, frequency, and space, and we therefore propose that the pattern of synchronization flexibly determines the pattern of neuronal interactions.
  • Zavala, R. (1997). Functional analysis of Akatek voice constructions. International Journal of American Linguistics, 63(4), 439-474.

    Abstract

    L'A. étudie les corrélations entre structure syntaxique et fonction pragmatique dans les alternances de voix en akatek, une langue maya appartenant au sous-groupe Q'anjob'ala. Les alternances pragmatiques de voix sont les mécanismes par lesquels les langues encodent les différents degrés de topicalité des deux principaux participants d'un événement sémantiquement transitif, l'agent et le patient. A l'aide d'une analyse quantitative, l'A. évalue la topicalité de ces participants et identifie les structures syntaxiques permettant d'exprimer les quatre principales fonctions de voix en akatek : active-directe, inverse, passive et antipassive
  • Ziegler, A., DeStefano, A. L., König, I. R., Bardel, C., Brinza, D., Bull, S., Cai, Z., Glaser, B., Jiang, W., Lee, K. E., Li, C. X., Li, J., Li, X., Majoram, P., Meng, Y., Nicodemus, K. K., Platt, A., Schwarz, D. F., Shi, W., Shugart, Y. Y. and 7 moreZiegler, A., DeStefano, A. L., König, I. R., Bardel, C., Brinza, D., Bull, S., Cai, Z., Glaser, B., Jiang, W., Lee, K. E., Li, C. X., Li, J., Li, X., Majoram, P., Meng, Y., Nicodemus, K. K., Platt, A., Schwarz, D. F., Shi, W., Shugart, Y. Y., Stassen, H. H., Sun, Y. V., Won, S., Wang, W., Wahba, G., Zagaar, U. A., & Zhao, Z. (2007). Data mining, neural nets, trees–problems 2 and 3 of Genetic Analysis Workshop 15. Genetic Epidemiology, 31(Suppl 1), S51-S60. doi:10.1002/gepi.20280.

    Abstract

    Genome-wide association studies using thousands to hundreds of thousands of single nucleotide polymorphism (SNP) markers and region-wide association studies using a dense panel of SNPs are already in use to identify disease susceptibility genes and to predict disease risk in individuals. Because these tasks become increasingly important, three different data sets were provided for the Genetic Analysis Workshop 15, thus allowing examination of various novel and existing data mining methods for both classification and identification of disease susceptibility genes, gene by gene or gene by environment interaction. The approach most often applied in this presentation group was random forests because of its simplicity, elegance, and robustness. It was used for prediction and for screening for interesting SNPs in a first step. The logistic tree with unbiased selection approach appeared to be an interesting alternative to efficiently select interesting SNPs. Machine learning, specifically ensemble methods, might be useful as pre-screening tools for large-scale association studies because they can be less prone to overfitting, can be less computer processor time intensive, can easily include pair-wise and higher-order interactions compared with standard statistical approaches and can also have a high capability for classification. However, improved implementations that are able to deal with hundreds of thousands of SNPs at a time are required.

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