The effect of literacy on phonological processing has been described in terms of a virus that “infects all speech processing” (Frith, 1998). Empirical data has established that literacy leads to changes to the way in which phonological information is processed. Harm & Seidenberg (1999) demonstrated that a connectionist network trained to map between English orthographic and phonological representations display’s more componential phonological processing than a network trained only to stably represent the phonological forms of words. Within this study we use a similar model yet manipulate the transparency of orthographic-to-phonological mappings. We observe that networks trained on a transparent orthography are better at restoring phonetic features and phonemes. However, networks trained on non-transparent orthographies are more likely to restore corrupted phonological segments with legal, coarser linguistic units (e.g. onset, coda). Our study therefore provides an explicit description of how differences in orthographic transparency can lead to varying strains and symptoms of the ‘literacy virus’.