Publications

Displaying 301 - 400 of 1091
  • Enfield, N. J. (2011). Taste in two tongues: A Southeast Asian study of semantic convergence. The Senses & Society, 6(1), 30-37. doi:10.2752/174589311X12893982233632.

    Abstract

    This article examines vocabulary for taste and flavor in two neighboring but unrelated languages (Lao and Kri) spoken in Laos, Southeast Asia. There are very close similarities in underlying semantic distinctions made in the taste/flavor domain in these two languages, not just in the set of basic tastes distinguished (sweet, salty, bitter, sour, umami or glutamate), but in a series of further basic terms for flavors, specifying texture and other sensations in the mouth apart from pure taste (e.g. starchy, dry in the mouth, minty, tingly, spicy). After presenting sets of taste/flavor vocabulary in the two languages and showing their high degree of convergence, the article discusses some methodological and theoretical issues that arise from the observation of close convergence in semantic structure across languages, in particular the issue of how much inter-speaker variation is possible not only across apparently highly convergent systems, but also within languages. The final section raises possible causes for the close convergence of semantic structure in the two languages. The conclusion is that the likely cause of this convergence is historical social contact between speech communities in the area, although the precise mode of influence (e.g. direction of transmission) is unknown.
  • Enfield, N. J. (2011). Sources of asymmetry in human interaction: Enchrony, status, knowledge and agency. In T. Stivers, L. Mondada, & J. Steensig (Eds.), The morality of knowledge in conversation (pp. 285-312). Cambridge: Cambridge University Press.
  • Enfield, N. J. (2010). Without social context? [Book review of Fitch 2010 and Larson et al. 2010]. Science, 329(5999), 1600-1601. doi:10.1126/science.1194229.

    Abstract

    Both of these considerations of the evolution of language draw on research from a wide range of fields, although Enfield believes they do not pay sufficient attention to the dynamic context of human social behavior.
  • Englert, C. (2010). Questions and responses in Dutch conversations. Journal of Pragmatics, 42, 2666-2684. doi:10.1016/j.pragma.2010.04.005.

    Abstract

    Based on an analysis of 350 questions and their responses in a corpus of ordinary interactions, this paper gives a descriptive overview of the ways Dutch interactants formulate their utterances to make them recognizable as doing questioning and the options they rely on to respond to these questions. I describe the formal options for formulating questions and responses in Dutch and the range of social actions (e.g. requests for information, requests for confirmation) that are implemented through questions in the corpus. Finally, I focus on answer design and discuss some of the coherence relations between questions, answers, and social actions. Questions that are asked to elicit information are associated with the more prototypical, lexico-morpho-syntactically defined question type such as polar interrogatives and, mainly, content questions. Most polar questions with declarative syntax are not primarily concerned with obtaining information but with doing other kinds of social actions
  • Ernestus, M., & Baayen, R. H. (2011). Corpora and exemplars in phonology. In J. A. Goldsmith, J. Riggle, & A. C. Yu (Eds.), The handbook of phonological theory (2nd ed.) (pp. 374-400). Oxford: Wiley-Blackwell.
  • Ernestus, M., & Warner, N. (2011). An introduction to reduced pronunciation variants [Editorial]. Journal of Phonetics, 39(SI), 253-260. doi:10.1016/S0095-4470(11)00055-6.

    Abstract

    Words are often pronounced very differently in formal speech than in everyday conversations. In conversational speech, they may contain weaker segments, fewer sounds, and even fewer syllables. The English word yesterday, for instance, may be pronounced as [j epsilon integral eI]. This article forms an introduction to the phenomenon of reduced pronunciation variants and to the eight research articles in this issue on the characteristics, production, and comprehension of these variants. We provide a description of the phenomenon, addressing its high frequency of occurrence in casual conversations in various languages, the gradient nature of many reduction processes, and the intelligibility of reduced variants to native listeners. We also describe the relevance of research on reduced variants for linguistic and psychological theories as well as for applications in speech technology and foreign language acquisition. Since reduced variants occur more often in spontaneous than in formal speech, they are hard to study in the laboratory under well controlled conditions. We discuss the advantages and disadvantages of possible solutions, including the research methods employed in the articles in this special issue, based on corpora and experiments. This article ends with a short overview of the articles in this issue.
  • Ernestus, M. (2011). Gradience and categoricality in phonological theory. In M. Van Oostendorp, C. J. Ewen, E. Hume, & K. Rice (Eds.), The Blackwell companion to phonology (pp. 2115-2136). Wiley-Blackwell.
  • Ernestus, M., & Warner, N. (Eds.). (2011). Speech reduction [Special Issue]. Journal of Phonetics, 39(SI).
  • Eschenko, O., Canals, S., Simanova, I., & Logothetis, N. K. (2010). Behavioral, electrophysiological and histopathological consequences of systemic manganese administration in MEMRI. Magnetic Resonance Imaging, 28, 1165-1174. doi:10.1016/j.mri.2009.12.022.

    Abstract

    Manganese (Mn2+)-enhanced magnetic resonance imaging (MEMRI) offers the possibility to generate longitudinal maps of brain activity in unrestrained and behaving animals. However, Mn2+ is a metabolic toxin and a competitive inhibitor for Ca2+, and therefore, a yet unsolved question in MEMRI studies is whether the concentrations of metal ion used may alter brain physiology. In the present work we have investigated the behavioral, electrophysiological and histopathological consequences of MnCl2 administration at concentrations and dosage protocols regularly used in MEMRI. Three groups of animals were sc injected with saline, 0.1 and 0.5 mmol/kg MnCl2, respectively. In vivo electrophysiological recordings in the hippocampal formation revealed a mild but detectable decrease in both excitatory postsynaptic potentials (EPSP) and population spike (PS) amplitude under the highest MnCl2 dose. The EPSP to PS ratio was preserved at control levels, indicating that neuronal excitability was not affected. Experiments of pair pulse facilitation demonstrated a dose dependent increase in the potentiation of the second pulse, suggesting presynaptic Ca2+ competition as the mechanism for the decreased neuronal response. Tetanization of the perforant path induced a long-term potentiation of synaptic transmission that was comparable in all groups, regardless of treatment. Accordingly, the choice accuracy tested on a hippocampal-dependent learning task was not affected. However, the response latency in the same task was largely increased in the group receiving 0.5 mmol/kg of MnCl2. Immunohistological examination of the hippocampus at the end of the experiments revealed no sign of neuronal toxicity or glial reaction. Although we show that MEMRI at 0.1 mmol/Kg MnCl2 may be safely applied to the study of cognitive networks, a detailed assessment of toxicity is strongly recommended for each particular study and Mn2+ administration protocol.
  • Eschenko, O., Canals, S., Simanova, I., Beyerlein, M., Murayama, Y., & Logothetis, N. K. (2010). Mapping of functional brain activity in freely behaving rats during voluntary running using manganese-enhanced MRI: Implication for longitudinal studies. Neuroimage, 49, 2544-2555. doi:10.1016/j.neuroimage.2009.10.079.

    Abstract

    Magnetic resonance imaging (MRI) is widely used in basic and clinical research to map the structural and functional organization of the brain. An important need of MR research is for contrast agents that improve soft-tissue contrast, enable visualization of neuronal tracks, and enhance the capacity of MRI to provide functional information at different temporal scales. Unchelated manganese can be such an agent, and manganese-enhanced MRI (MEMRI) can potentially be an excellent technique for localization of brain activity (for review see Silva et al., 2004). Yet, the toxicity of manganese presents a major limitation for employing MEMRI in behavioral paradigms. We have tested systematically the voluntary wheel running behavior of rats after systemic application of MnCl2 in a dose range of 16–80 mg/kg, which is commonly used in MEMRI studies. The results show a robust dose-dependent decrease in motor performance, which was accompanied by weight loss and decrease in food intake. The adverse effects lasted for up to 7 post-injection days. The lowest dose of MnCl2 (16 mg/kg) produced minimal adverse effects, but was not sufficient for functional mapping. We have therefore evaluated an alternative method of manganese delivery via osmotic pumps, which provide a continuous and slow release of manganese. In contrast to a single systemic injection, the pump method did not produce any adverse locomotor effects, while achieving a cumulative concentration of manganese (80 mg/kg) sufficient for functional mapping. Thus, MEMRI with such an optimized manganese delivery that avoids toxic effects can be safely applied for longitudinal studies in behaving animals.
  • Evans, N., Levinson, S. C., Gaby, A., & Majid, A. (2011). Introduction: Reciprocals and semantic typology. In N. Evans, A. Gaby, S. C. Levinson, & A. Majid (Eds.), Reciprocals and semantic typology (pp. 1-28). Amsterdam: Benjamins.

    Abstract

    Reciprocity lies at the heart of social cognition, and with it so does the encoding of reciprocity in language via reciprocal constructions. Despite the prominence of strong universal claims about the semantics of reciprocal constructions, there is considerable descriptive literature on the semantics of reciprocals that seems to indicate variable coding and subtle cross-linguistic differences in meaning of reciprocals, both of which would make it impossible to formulate a single, essentialising definition of reciprocal semantics. These problems make it vital for studies in the semantic typology of reciprocals to employ methodologies that allow the relevant categories to emerge objectively from cross-linguistic comparison of standardised stimulus materials. We situate the rationale for the 20-language study that forms the basis for this book within this empirical approach to semantic typology, and summarise some of the findings.

    Files private

    Request files
  • Evans, N., Gaby, A., Levinson, S. C., & Majid, A. (Eds.). (2011). Reciprocals and semantic typology. Amsterdam: Benjamins.

    Abstract

    Reciprocals are an increasingly hot topic in linguistic research. This reflects the intersection of several factors: the semantic and syntactic complexity of reciprocal constructions, their centrality to some key points of linguistic theorizing (such as Binding Conditions on anaphors within Government and Binding Theory), and the centrality of reciprocity to theories of social structure, human evolution and social cognition. No existing work, however, tackles the question of exactly what reciprocal constructions mean cross-linguistically. Is there a single, Platonic ‘reciprocal’ meaning found in all languages, or is there a cluster of related concepts which are nonetheless impossible to characterize in any single way? That is the central goal of this volume, and it develops and explains new techniques for tackling this question. At the same time, it confronts a more general problem facing semantic typology: how to investigate a category cross-linguistically without pre-loading the definition of the phenomenon on the basis of what is found in more familiar languages.
  • Fawcett, C. A., & Markson, L. (2010). Children reason about shared preferences. Developmental Psychology, 46, 299-309. doi:10.1037/a0018539.

    Abstract

    Two-year-old children’s reasoning about the relation between their own and others’ preferences was investigated across two studies. In Experiment 1, children first observed 2 actors display their individual preferences for various toys. Children were then asked to make inferences about new, visually inaccessible toys and books that were described as being the favorite of each actor, unfamiliar to each actor, or disliked by each actor. Children tended to select the favorite toys and books from the actor who shared their own preference but chose randomly when the new items were unfamiliar to or disliked by the two actors. Experiment 2 extended these findings, showing that children do not generalize a shared preference across unrelated categories of items. Taken together, the results suggest that young children readily recognize when another person holds a preference similar to their own and use that knowledge appropriately to achieve desired outcomes.
  • Fawcett, C., & Markson, L. (2010). Similarity predicts liking in 3-year-old children. Journal of Experimental Child Psychology, 105, 345-358. doi:10.1016/j.jecp.2009.12.002.

    Abstract

    Two studies examined the influence of similarity on 3-year-old children’s initial liking of their peers. Children were presented with pairs of childlike puppets who were either similar or dissimilar to them on a specified dimension and then were asked to choose one of the puppets to play with as a measure of liking. Children selected the puppet whose food preferences or physical appearance matched their own. Unpacking the physical appearance finding revealed that the stable similarity of hair color may influence liking more strongly than the transient similarity of shirt color. A second study showed that children also prefer to play with a peer who shares their toy preferences, yet importantly, show no bias toward a peer who is similar on an arbitrary dimension. The findings provide insight into the earliest development of peer relations in young children.
  • Lu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., Lowe, R., Yan, Q., Zhang, J., Vu, H., Ablaeva, J., Acosta-Rodriguez, V. A., Adams, D. M., Almunia, J., Aloysius, A., Ardehali, R., Arneson, A., Baker, C. S., Banks, G., Belov, K. and 168 moreLu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., Lowe, R., Yan, Q., Zhang, J., Vu, H., Ablaeva, J., Acosta-Rodriguez, V. A., Adams, D. M., Almunia, J., Aloysius, A., Ardehali, R., Arneson, A., Baker, C. S., Banks, G., Belov, K., Bennett, N. C., Black, P., Blumstein, D. T., Bors, E. K., Breeze, C. E., Brooke, R. T., Brown, J. L., Carter, G. G., Caulton, A., Cavin, J. M., Chakrabarti, L., Chatzistamou, I., Chen, H., Cheng, K., Chiavellini, P., Choi, O. W., Clarke, S. M., Cooper, L. N., Cossette, M. L., Day, J., DeYoung, J., DiRocco, S., Dold, C., Ehmke, E. E., Emmons, C. K., Emmrich, S., Erbay, E., Erlacher-Reid, C., Faulkes, C. G., Ferguson, S. H., Finno, C. J., Flower, J. E., Gaillard, J. M., Garde, E., Gerber, L., Gladyshev, V. N., Gorbunova, V., Goya, R. G., Grant, M. J., Green, C. B., Hales, E. N., Hanson, M. B., Hart, D. W., Haulena, M., Herrick, K., Hogan, A. N., Hogg, C. J., Hore, T. A., Huang, T., Izpisua Belmonte, J. C., Jasinska, A. J., Jones, G., Jourdain, E., Kashpur, O., Katcher, H., Katsumata, E., Kaza, V., Kiaris, H., Kobor, M. S., Kordowitzki, P., Koski, W. R., Krützen, M., Kwon, S. B., Larison, B., Lee, S. G., Lehmann, M., Lemaitre, J. F., Levine, A. J., Li, C., Li, X., Lim, A. R., Lin, D. T. S., Lindemann, D. M., Little, T. J., Macoretta, N., Maddox, D., Matkin, C. O., Mattison, J. A., McClure, M., Mergl, J., Meudt, J. J., Montano, G. A., Mozhui, K., Munshi-South, J., Naderi, A., Nagy, M., Narayan, P., Nathanielsz, P. W., Nguyen, N. B., Niehrs, C., O’Brien, J. K., O’Tierney Ginn, P., Odom, D. T., Ophir, A. G., Osborn, S., Ostrander, E. A., Parsons, K. M., Paul, K. C., Pellegrini, M., Peters, K. J., Pedersen, A. B., Petersen, J. L., Pietersen, D. W., Pinho, G. M., Plassais, J., Poganik, J. R., Prado, N. A., Reddy, P., Rey, B., Ritz, B. R., Robbins, J., Rodriguez, M., Russell, J., Rydkina, E., Sailer, L. L., Salmon, A. B., Sanghavi, A., Schachtschneider, K. M., Schmitt, D., Schmitt, T., Schomacher, L., Schook, L. B., Sears, K. E., Seifert, A. W., Seluanov, A., Shafer, A. B. A., Shanmuganayagam, D., Shindyapina, A. V., Simmons, M., Singh, K., Sinha, I., Slone, J., Snell, R. G., Soltanmaohammadi, E., Spangler, M. L., Spriggs, M. C., Staggs, L., Stedman, N., Steinman, K. J., Stewart, D. T., Sugrue, V. J., Szladovits, B., Takahashi, J. S., Takasugi, M., Teeling, E. C., Thompson, M. J., Van Bonn, B., Vernes, S. C., Villar, D., Vinters, H. V., Wallingford, M. C., Wang, N., Wayne, R. K., Wilkinson, G. S., Williams, C. K., Williams, R. W., Yang, X. W., Yao, M., Young, B. G., Zhang, B., Zhang, Z., Zhao, P., Zhao, Y., Zhou, W., Zimmermann, J., Ernst, J., Raj, K., & Horvath, S. (2023). Universal DNA methylation age across mammalian tissues. Nature aging, 3, 1144-1166. doi:10.1038/s43587-023-00462-6.

    Abstract

    Aging, often considered a result of random cellular damage, can be accurately estimated using DNA methylation profiles, the foundation of pan-tissue epigenetic clocks. Here, we demonstrate the development of universal pan-mammalian clocks, using 11,754 methylation arrays from our Mammalian Methylation Consortium, which encompass 59 tissue types across 185 mammalian species. These predictive models estimate mammalian tissue age with high accuracy (r > 0.96). Age deviations correlate with human mortality risk, mouse somatotropic axis mutations and caloric restriction. We identified specific cytosines with methylation levels that change with age across numerous species. These sites, highly enriched in polycomb repressive complex 2-binding locations, are near genes implicated in mammalian development, cancer, obesity and longevity. Our findings offer new evidence suggesting that aging is evolutionarily conserved and intertwined with developmental processes across all mammals.
  • Feinberg, H., Taylor, M. E., Razi, N., McBride, R., Knirel, Y. A., Graham, S. A., Drickamer, K., & Weis, W. I. (2011). Structural basis for langerin recognition of diverse pathogen and mammalian glycans through a single binding site. Journal of Molecular Biology, 405, 1027-1039. doi:10.1016/j.jmb.2010.11.039.

    Abstract

    Langerin mediates the carbohydrate-dependent uptake of pathogens by Langerhans cells in the first step of antigen presentation to the adaptive immune system. Langerin binds to an unusually diverse number of endogenous and pathogenic cell surface carbohydrates, including mannose-containing O-specific polysaccharides derived from bacterial lipopolysaccharides identified here by probing a microarray of bacterial polysaccharides. Crystal structures of the carbohydrate-recognition domain from human langerin bound to a series of oligomannose compounds, the blood group B antigen, and a fragment of β-glucan reveal binding to mannose, fucose, and glucose residues by Ca(2+) coordination of vicinal hydroxyl groups with similar stereochemistry. Oligomannose compounds bind through a single mannose residue, with no other mannose residues contacting the protein directly. There is no evidence for a second Ca(2+)-independent binding site. Likewise, a β-glucan fragment, Glcβ1-3Glcβ1-3Glc, binds to langerin through the interaction of a single glucose residue with the Ca(2+) site. The fucose moiety of the blood group B trisaccharide Galα1-3(Fucα1-2)Gal also binds to the Ca(2+) site, and selective binding to this glycan compared to other fucose-containing oligosaccharides results from additional favorable interactions of the nonreducing terminal galactose, as well as of the fucose residue. Surprisingly, the equatorial 3-OH group and the axial 4-OH group of the galactose residue in 6SO(4)-Galβ1-4GlcNAc also coordinate Ca(2+), a heretofore unobserved mode of galactose binding in a C-type carbohydrate-recognition domain bearing the Glu-Pro-Asn signature motif characteristic of mannose binding sites. Salt bridges between the sulfate group and two lysine residues appear to compensate for the nonoptimal binding of galactose at this site.

    Additional information

    Feinberg_2011_Suppl_Table.pdf
  • Fenk, L. M., Heidlmayr, K., Lindner, P., & Schmid, A. (2010). Pupil Size in Spider Eyes Is Linked to Post-Ecdysal Lens Growth. PLoS One, 5(12): e15838. doi:10.1371/journal.pone.0015838.

    Abstract

    In this study we describe a distinctive pigment ring that appears in spider eyes after ecdysis and successively decreases in size in the days thereafter. Although pigment stops in spider eyes are well known, size variability is, to our knowledge, reported here for the first time. Representative species from three families (Ctenidae, Sparassidae and Lycosidae) are investigated and, for one of these species (Cupiennius salei, Ctenidae), the progressive increase in pupil diameter is monitored. In this species the pupil occupies only a fourth of the total projected lens surface after ecdysis and reaches its final size after approximately ten days. MicroCT images suggest that the decrease of the pigment ring is linked to the growth of the corneal lens after ecdysis. The pigment rings might improve vision in the immature eye by shielding light rays that would otherwise enter the eye via peripheral regions of the cornea, beside the growing crystalline lens.
  • Ferré, G. (2023). Pragmatic gestures and prosody. In W. Pouw, J. Trujillo, H. R. Bosker, L. Drijvers, M. Hoetjes, J. Holler, S. Kadava, L. Van Maastricht, E. Mamus, & A. Ozyurek (Eds.), Gesture and Speech in Interaction (GeSpIn) Conference. doi:10.17617/2.3527215.

    Abstract

    The study presented here focuses on two pragmatic gestures:
    the hand flip (Ferré, 2011), a gesture of the Palm Up Open
    Hand/PUOH family (Müller, 2004) and the closed hand which
    can be considered as the opposite kind of movement to the open-
    ing of the hands present in the PUOH gesture. Whereas one of
    the functions of the hand flip has been described as presenting
    a new point in speech (Cienki, 2021), the closed hand gesture
    has not yet been described in the literature to the best of our
    knowledge. It can however be conceived of as having the oppo-
    site function of announcing the end of a point in discourse. The
    object of the present study is therefore to determine, with the
    study of prosodic features, if the two gestures are found in the
    same type of speech units and what their respective scope is.
    Drawing from a corpus of three TED Talks in French the
    prosodic characteristics of the speech that accompanies the two
    gestures will be examined. The hypothesis developed in the
    present paper is that their scope should be reflected in the
    prosody of accompanying speech, especially pitch key, tone,
    and relative pitch range. The prediction is that hand flips and
    closing hand gestures are expected to be located at the periph-
    ery of Intonation Phrases (IPs), Inter-Pausal Units (IPUs) or
    more conversational Turn Constructional Units (TCUs), and are
    likely to be co-occurrent with pauses in speech. But because of
    the natural slope of intonation in speech, the speech that accom-
    pany early gestures in Intonation Phrases should reveal different
    features from the speech at the end of intonational units. Tones
    should be different as well, considering the prosodic structure
    of spoken French.
  • Ferreira, F., & Huettig, F. (2023). Fast and slow language processing: A window into dual-process models of cognition. [Open Peer commentary on De Neys]. Behavioral and Brain Sciences, 46: e121. doi:10.1017/S0140525X22003041.

    Abstract

    Our understanding of dual-process models of cognition may benefit from a consideration of language processing, as language comprehension involves fast and slow processes analogous to those used for reasoning. More specifically, De Neys's criticisms of the exclusivity assumption and the fast-to-slow switch mechanism are consistent with findings from the literature on the construction and revision of linguistic interpretations.
  • Fikkert, P., & Chen, A. (2011). The role of word-stress and intonation in word recognition in Dutch 14- and 24-month-olds. In N. Danis, K. Mesh, & H. Sung (Eds.), Proceedings of the 35th annual Boston University Conference on Language Development (pp. 222-232). Somerville, MA: Cascadilla Press.
  • Fisher, S. E. (2010). Genetic susceptibility to stuttering [Editorial]. New England Journal of Medicine, 362, 750-752. doi:10.1056/NEJMe0912594.
  • Fitz, H., Chang, F., & Christansen, M. H. (2011). A connectionist account of the acquisition and processing of relative clauses. In E. Kidd (Ed.), The acquisition of relative clauses. Processing, typology and function (pp. 39-60). Amsterdam: Benjamins.

    Abstract

    Relative clause processing depends on the grammatical role of the head noun in the subordinate clause. This has traditionally been explained in terms of cognitive limitations. We suggest that structure-related processing differences arise from differences in experience with these structures. We present a connectionist model which learns to produce utterances with relative clauses from exposure to message-sentence pairs. The model shows how various factors such as frequent subsequences, structural variations, and meaning conspire to create differences in the processing of these structures. The predictions of this learning-based account have been confirmed in behavioral studies with adults. This work shows that structural regularities that govern relative clause processing can be explained within a usage-based approach to recursion.
  • Fitz, H. (2011). A liquid-state model of variability effects in learning nonadjacent dependencies. In L. Carlson, C. Hölscher, & T. Shipley (Eds.), Proceedings of the 33rd Annual Conference of the Cognitive Science Society (pp. 897-902). Austin, TX: Cognitive Science Society.

    Abstract

    Language acquisition involves learning nonadjacent dependencies that can obtain between words in a sentence. Several artificial grammar learning studies have shown that the ability of adults and children to detect dependencies between A and B in frames AXB is influenced by the amount of variation in the X element. This paper presents a model of statistical learning which displays similar behavior on this task and generalizes in a human-like way. The model was also used to predict human behavior for increased distance and more variation in dependencies. We compare our model-based approach with the standard invariance account of the variability effect.
  • Fitz, H. (2010). Statistical learning of complex questions. In S. Ohlsson, & R. Catrambone (Eds.), Proceedings of the 32nd Annual Conference of the Cognitive Science Society (pp. 2692-2698). Austin, TX: Cognitive Science Society.

    Abstract

    The problem of auxiliary fronting in complex polar questions occupies a prominent position within the nature versus nurture controversy in language acquisition. We employ a model of statistical learning which uses sequential and semantic information to produce utterances from a bag of words. This linear learner is capable of generating grammatical questions without exposure to these structures in its training environment. We also demonstrate that the model performs superior to n-gram learners on this task. Implications for nativist theories of language acquisition are discussed.
  • FitzPatrick, I. (2011). Lexical interactions in non-native speech comprehension: Evidence from electro-encephalography, eye-tracking, and functional magnetic resonance imaging. PhD Thesis, Radboud University Nijmegen, Nijmegen.
  • FitzPatrick, I., & Indefrey, P. (2010). Lexical competition in nonnative speech comprehension. Journal of Cognitive Neuroscience, 22, 1165-1178. doi:10.1162/jocn.2009.21301.

    Abstract

    Electrophysiological studies consistently find N400 effects of semantic incongruity in nonnative (L2) language comprehension. These N400 effects are often delayed compared with native (L1) comprehension, suggesting that semantic integration in one's second language occurs later than in one's first language. In this study, we investigated whether such a delay could be attributed to (1) intralingual lexical competition and/or (2) interlingual lexical competition. We recorded EEG from Dutch–English bilinguals who listened to English (L2) sentences in which the sentence-final word was (a) semantically fitting and (b) semantically incongruent or semantically incongruent but initially congruent due to sharing initial phonemes with (c) the most probable sentence completion within the L2 or (d) the L1 translation equivalent of the most probable sentence completion. We found an N400 effect in each of the semantically incongruent conditions. This N400 effect was significantly delayed to L2 words but not to L1 translation equivalents that were initially congruent with the sentence context. Taken together, these findings firstly demonstrate that semantic integration in nonnative listening can start based on word initial phonemes (i.e., before a single lexical candidate could have been selected based on the input) and secondly suggest that spuriously elicited L1 lexical candidates are not available for semantic integration in L2 speech comprehension.
  • Fiveash, A., Ferreri, L., Bouwer, F. L., Kösem, A., Moghimi, S., Ravignani, A., Keller, P. E., & Tillmann, B. (2023). Can rhythm-mediated reward boost learning, memory, and social connection? Perspectives for future research. Neuroscience and Biobehavioral Reviews, 149: 105153. doi:10.1016/j.neubiorev.2023.105153.

    Abstract

    Studies of rhythm processing and of reward have progressed separately, with little connection between the two. However, consistent links between rhythm and reward are beginning to surface, with research suggesting that synchronization to rhythm is rewarding, and that this rewarding element may in turn also boost this synchronization. The current mini review shows that the combined study of rhythm and reward can be beneficial to better understand their independent and combined roles across two central aspects of cognition: 1) learning and memory, and 2) social connection and interpersonal synchronization; which have so far been studied largely independently. From this basis, it is discussed how connections between rhythm and reward can be applied to learning and memory and social connection across different populations, taking into account individual differences, clinical populations, human development, and animal research. Future research will need to consider the rewarding nature of rhythm, and that rhythm can in turn boost reward, potentially enhancing other cognitive and social processes.
  • Flecken, M. (2011). Assessing bilingual attainment: macrostructural planning in narratives. International Journal of Bilingualism, 15(2), 164-186. doi:10.1177/1367006910381187.

    Abstract

    The present study addresses questions concerning bilinguals’ attainment in the two languages by investigating the extent to which early bilinguals manage to apply the information structure required in each language when producing a complex text. In re-narrating the content of a film, speakers have to break down the perceived series of dynamic situations and structure relevant information into units that are suited for linguistic expression. The analysis builds on typological studies of Germanic and Romance languages which investigate the role of grammaticized concepts in determining core features in information structure. It takes a global perspective in that it focuses on factors that determine information selection and information structure that hold in macrostructural terms for the text as a whole (factors driving information selection, the temporal frame used to locate events on the time line, and the means used in reference management). A first comparison focuses on Dutch and German monolingual native speakers and shows that despite overall typological similarities, there are subtle though systematic differences between the two languages in the aforementioned areas of information structure. The analyses of the bilinguals focus on their narratives in both languages, and compares the patterns found to those found in the monolingual narratives. Findings show that the method used provides insights into the individual bilingual’s attainment in the two languages and identifies either balanced levels of attainment, patterns showing higher degrees of conformity with one of the languages, as well as bilingual-specific patterns of performance.
  • Flecken, M. (2011). Event conceptualization by early Dutch-German bilinguals: Insights from linguistic and eye-tracking data. Bilingualism: Language and Cognition, 14(1), 61-77. doi:10.1017/S1366728910000027.

    Abstract

    This experimental study investigates event construal by early Dutch–German bilinguals, as reflected in their oral depiction of everyday events shown in video clips. The starting point is the finding that the expression of an aspectual perspective (progressive aspect), and its consequences for event construal, is dependent on the extent to which means are grammaticalized, as in English (e.g., progressive aspect) or not, as in German (von Stutterheim & Carroll, 2006). The present study shows that although speakers of Dutch and German have comparable means to mark this aspectual concept, at a first glance at least, they differ markedly both in the contexts as well as in the extent to which this aspectual perspective is selected, being highly frequent in specific contexts in Dutch, but not in German. The present experimental study investigates factors that lead to the use of progressive aspect by early bilinguals, using video clips (with different types of events varied along specific dimensions on a systematic basis). The study includes recordings of eye movements, and examines how far an aspectual perspective drives allocation of attention during information intake while viewing the stimulus material, both for and while speaking. Although the bilinguals have acquired the means to express progressive aspect in Dutch, their use shows a pattern that differs from monolingual Dutch speakers. Interestingly, these differences are reflected in different patterns in the direction of attention (eye movements) when verbalizing information on events.
  • Flecken, M. (2010). Event conceptualization in language production of early bilinguals. PhD Thesis, Heidelberg University and Radboud University Nijmegen. LOT dissertation series; 256.
  • Flecken, M. (2011). What native speaker judgments tell us about the grammaticalization of a progressive aspectual marker in Dutch. Linguistics, 49(3), 479-524. doi:10.1515/LING.2011.015.

    Abstract

    This paper focuses on native speaker judgments of a construction in Dutch that functions as a progressive aspectual marker (aan het X zijn, referred to as aan het-construction) and represents an event as in progression at the time of speech. The method was chosen in order to investigate how native speakers assess the scope and conditions of use of a construction which is in the process of grammaticalization. It allows for the inclusion of a large group of participants of different age groups and an investigation of potential age-related differences. The study systematically covers a range of temporal variables that were shown to be relevant in elicitation and corpus-based studies on the grammaticalization of progressive aspect constructions. The results provide insights into the selectional preferences and constraints of the aan het-construction in contemporary Dutch, as judged by native speakers, and the extent to which they correlate with production tasks.
  • Floyd, S. (2010). Discourse forms and social categorization in Cha'palaa. PhD Thesis, University of Texas, Austin, TX.

    Abstract

    This dissertation is an ethnographic study of race and other forms of social categorization as approached through the discourse of the indigenous Chachi people of northwestern lowland Ecuador and their Afro-descendant neighbors. It combines the ethnographic methods of social anthropology with the methods of descriptive linguistics, letting social questions about racial formation guide linguistic inquiry. It provides new information about the largely unstudied indigenous South American language Cha’palaa, and connects that information about linguistic form to problems of the study of race and ethnicity in Latin America. Individual descriptive chapters address how the Cha’palaa number system is based on collectivity rather than plurality according to an animacy hierarchy that codes only human and human-like social collectivities, how a nominal set of ethnonyms linked to Chachi oral history become the recipients of collective marking as human collectivities, how those collectivities are co-referentially linked to speech participants through the deployment of the pronominal system, and how the multi-modal resource of gesture adds to these rich resources supplied by the spoken language for the expression of social realities like race. The final chapters address Chachi and Afrodescendant discourses in dialogue with each other and examine naturally occurring speech data to show how the linguistic forms described in previous chapters are used in social interaction. The central argument advances a position that takes the socially constructed status of race seriously and considers that for such constructions to exist as more abstract macro-categories they must be constituted by instances of social interaction, where elements of the social order are observable at the micro-level. In this way localized articulations of social categories become vehicles for the broader circulation of discourses structured by a history of racialized social inequality, revealing the extreme depth of racialization in human social conditioning. This dissertation represents a contribution to the field of linguistic anthropology as well as to descriptive linguistics of South American languages and to critical approaches to race and ethnicity in Latin America.
  • Floyd, S. (2011). [Review of the book Racism and discourse in Latin America ed. by Teun A. van Dijk]. Language in Society, 40, 670-671. doi:10.1017/S0047404511000807.
  • Floyd, S., & Bruil, M. (2011). Interactional functions as part of the grammar: The suffix –ba in Cha’palaa. In P. K. Austin, O. Bond, D. Nathan, & L. Marten (Eds.), Proceedings of the 3rd Conference on Language Description and Theory (pp. 91-100). London: SOAS.
  • Floyd, S. (2011). Re-discovering the Quechua adjective. Linguistic Typology, 15, 25-63. doi:10.1515/LITY.2011.003.

    Abstract

    This article describes the adjective class in Quechua, countering many previous accounts of the language as a linguistic type with no adjective/noun distinction. It applies a set of common crosslinguistic criteria for distinguishing adjectives to data from several dialects of Ecuadorian Highland Quechua (EHQ), analyzing examples from a natural speech audio/video corpus, speaker intuitions of grammaticality, and controlled elicitation exercises. It is concluded that by virtually any standard Quechua shows clear evidence for a distinct class of attributive noun modifiers, and that in the future Quechua should not be considered a “flexible” noun/adjective language for the purposes of crosslinguistic comparison.
  • Folia, V., Uddén, J., De Vries, M., Forkstam, C., & Petersson, K. M. (2010). Artificial language learning in adults and children. In M. Gullberg, & P. Indefrey (Eds.), The earliest stages of language learning (pp. 188-220). Malden, MA: Wiley-Blackwell.
  • Folia, V., Uddén, J., De Vries, M., Forkstam, C., & Petersson, K. M. (2010). Artificial language learning in adults and children. Language learning, 60(s2), 188-220. doi:10.1111/j.1467-9922.2010.00606.x.

    Abstract

    This article briefly reviews some recent work on artificial language learning in children and adults. The final part of the article is devoted to a theoretical formulation of the language learning problem from a mechanistic neurobiological viewpoint and we show that it is logically possible to combine the notion of innate language constraints with, for example, the notion of domain general learning mechanisms. A growing body of empirical evidence suggests that the mechanisms involved in artificial language learning and in structured sequence processing are shared with those of natural language acquisition and natural language processing. Finally, by theoretically analyzing a formal learning model, we highlight Fodor’s insight that it is logically possible to combine innate, domain-specific constraints with domain-general learning mechanisms.
  • Folia, V., Forkstam, C., Ingvar, M., Hagoort, P., & Petersson, K. M. (2011). Implicit artificial syntax processing: Genes, preference, and bounded recursion. Biolinguistics, 5(1/2), 105-132.

    Abstract

    The first objective of this study was to compare the brain network engaged by preference classification and the standard grammaticality classification after implicit artificial syntax acquisition by re-analyzing previously reported event-related fMRI data. The results show that preference and grammaticality classification engage virtually identical brain networks, including Broca’s region, consistent with previous behavioral findings. Moreover, the results showed that the effects related to artificial syntax in Broca’s region were essentially the same when masked with variability related to natural syntax processing in the same participants. The second objective was to explore CNTNAP2-related effects in implicit artificial syntax learning by analyzing behavioral and event-related fMRI data from a subsample. The CNTNAP2 gene has been linked to specific language impairment and is controlled by the FOXP2 transcription factor. CNTNAP2 is expressed in language related brain networks in the developing human brain and the FOXP2–CNTNAP2 pathway provides a mechanistic link between clinically distinct syndromes involving disrupted language. Finally, we discuss the implication of taking natural language to be a neurobiological system in terms of bounded recursion and suggest that the left inferior frontal region is a generic on-line sequence processor that unifies information from various sources in an incremental and recursive manner.
  • Forkel, S. J., Dell’Acqua, F., Kalra, L., Williams, S. C., & Catani, M. (2011). Lateralisation of the Arcuate Fasciculus Predicts Aphasia Recovery at 6 Months. Procedia - Social and Behavioral Sciences, 23, 164-166. doi:10.1016/j.sbspro.2011.09.221.
  • Fortunato, L., & Jordan, F. (2010). Your place or mine? A phylogenetic comparative analysis of marital residence in Indo-European and Austronesian societies. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 365(1559), 3913 -3922. doi:10.1098/rstb.2010.0017.

    Abstract

    Accurate reconstruction of prehistoric social organization is important if we are to put together satisfactory multidisciplinary scenarios about, for example, the dispersal of human groups. Such considerations apply in the case of Indo-European and Austronesian, two large-scale language families that are thought to represent Neolithic expansions. Ancestral kinship patterns have mostly been inferred through reconstruction of kin terminologies in ancestral proto-languages using the linguistic comparative method, and through geographical or distributional arguments based on the comparative patterns of kin terms and ethnographic kinship ‘facts’. While these approaches are detailed and valuable, the processes through which conclusions have been drawn from the data fail to provide explicit criteria for systematic testing of alternative hypotheses. Here, we use language trees derived using phylogenetic tree-building techniques on Indo-European and Austronesian vocabulary data. With these trees, ethnographic data and Bayesian phylogenetic comparative methods, we statistically reconstruct past marital residence and infer rates of cultural change between different residence forms, showing Proto-Indo-European to be virilocal and Proto-Malayo-Polynesian uxorilocal. The instability of uxorilocality and the rare loss of virilocality once gained emerge as common features of both families
  • Fournier, R., Gussenhoven, C., Jensen, O., & Hagoort, P. (2010). Lateralization of tonal and intonational pitch processing: An MEG study. Brain Research, 1328, 79-88. doi:10.1016/j.brainres.2010.02.053.

    Abstract

    An MEG experiment was carried out in order to compare the processing of lexical-tonal and intonational contrasts, based on the tonal dialect of Roermond (the Netherlands). A set of words with identical phoneme sequences but distinct pitch contours, which represented different lexical meanings or discourse meanings (statement vs. question), were presented to native speakers as well as to a control group of speakers of Standard Dutch, a non-tone language. The stimuli were arranged in a mismatch paradigm, under three experimental conditions: in the first condition (lexical), the pitch contour differences between standard and deviant stimuli reflected differences between lexical meanings; in the second condition (intonational), the stimuli differed in their discourse meaning; in the third condition (combined), they differed both in their lexical and discourse meaning. In all three conditions, native as well as non-native responses showed a clear MMNm (magnetic mismatch negativity) in a time window from 150 to 250 ms after the divergence point of standard and deviant pitch contours. In the lexical condition, a stronger response was found over the left temporal cortex of native as well as non-native speakers. In the intonational condition, the same activation pattern was observed in the control group, but not in the group of native speakers, who showed a right-hemisphere dominance instead. Finally, in the combined (lexical and intonational) condition, brain reactions appeared to represent the summation of the patterns found in the other two conditions. In sum, the lateralization of pitch processing is condition-dependent in the native group only, which suggests that language experience determines how processes should be distributed over both temporal cortices, according to the functions available in the grammar.
  • Francks, C. (2011). Leucine-rich repeat genes and the fine-tuning of synapses. Biological Psychiatry, 69, 820-821. doi:10.1016/j.biopsych.2010.12.018.
  • Francks, C., Tozzi, F., Farmer, A., Vincent, J. B., Rujescu, D., St Clair, D., & Muglia, P. (2010). Population-based linkage analysis of schizophrenia and bipolar case-control cohorts identifies a potential susceptibility locus on 19q13. Molecular Psychiatry, 15, 319-325. doi:10.1038/mp.2008.100.

    Abstract

    Population-based linkage analysis is a new method for analysing genomewide single nucleotide polymorphism (SNP) genotype data in case-control samples, which does not assume a common disease, common variant model. The genome is scanned for extended segments that show increased identity-by-descent sharing within case-case pairs, relative to case-control or control-control pairs. The method is robust to allelic heterogeneity and is suited to mapping genes which contain multiple, rare susceptibility variants of relatively high penetrance. We analysed genomewide SNP datasets for two schizophrenia case-control cohorts, collected in Aberdeen (461 cases, 459 controls) and Munich (429 cases, 428 controls). Population-based linkage testing must be performed within homogeneous samples and it was therefore necessary to analyse the cohorts separately. Each cohort was first subjected to several procedures to improve genetic homogeneity, including identity-by-state outlier detection and multidimensional scaling analysis. When testing only cases who reported a positive family history of major psychiatric disease, consistent with a model of strongly penetrant susceptibility alleles, we saw a distinct peak on chromosome 19q in both cohorts that appeared in meta-analysis (P=0.000016) to surpass the traditional level for genomewide significance for complex trait linkage. The linkage signal was also present in a third case-control sample for familial bipolar disorder, such that meta-analysing all three datasets together yielded a linkage P=0.0000026. A model of rare but highly penetrant disease alleles may be more applicable to some instances of major psychiatric diseases than the common disease common variant model, and we therefore suggest that other genome scan datasets are analysed with this new, complementary method.
  • Franke, B., Vasquez, A. A., Johansson, S., Hoogman, M., Romanos, J., Boreatti-Hümmer, A., Heine, M., Jacob, C. P., Lesch, K.-P., Casas, M., Ribasés, M., Bosch, R., Sánchez-Mora, C., Gómez-Barros, N., Fernàndez-Castillo, N., Bayés, M., Halmøy, A., Halleland, H., Landaas, E. T., Fasmer, O. B. and 13 moreFranke, B., Vasquez, A. A., Johansson, S., Hoogman, M., Romanos, J., Boreatti-Hümmer, A., Heine, M., Jacob, C. P., Lesch, K.-P., Casas, M., Ribasés, M., Bosch, R., Sánchez-Mora, C., Gómez-Barros, N., Fernàndez-Castillo, N., Bayés, M., Halmøy, A., Halleland, H., Landaas, E. T., Fasmer, O. B., Knappskog, P. M., Heister, A. J. G. A. M., Kiemeney, L. A., Kooij, J. J. S., Boonstra, A. M., Kan, C. C., Asherson, P., Faraone, S. V., Buitelaar, J. K., Haavik, J., Cormand, B., Ramos-Quiroga, J. A., & Reif, A. (2010). Multicenter analysis of the SLC6A3/DAT1 VNTR haplotype in persistent ADHD suggests differential involvement of the gene in childhood and persistent ADHD. Neuropsychopharmacology, 35(3), 656-664. doi:10.1038/npp.2009.170.

    Abstract

    Attention deficit/hyperactivity disorder (ADHD) is one of the most common neuropsychiatric disorders with a worldwide prevalence around 4–5% in children and 1–4% in adults. Although ADHD is highly heritable and familial risk may contribute most strongly to the persistent form of the disorder, there are few studies on the genetics of ADHD in adults. In this paper, we present the first results of the International Multicentre Persistent ADHD Genetics CollaboraTion (IMpACT) that has been set up with the goal of performing research into the genetics of persistent ADHD. In this study, we carried out a combined analysis as well as a meta-analysis of the association of the SLC6A3/DAT1 gene with persistent ADHD in 1440 patients and 1769 controls from IMpACT and an earlier report. DAT1, encoding the dopamine transporter, is one of the most frequently studied genes in ADHD, though results have been inconsistent. A variable number tandem repeat polymorphism (VNTR) in the 3′-untranslated region (UTR) of the gene and, more recently, a haplotype of this VNTR with another VNTR in intron 8 have been the target of most studies. Although the 10/10 genotype of the 3′-UTR VNTR and the 10-6 haplotype of the two VNTRs are thought to be risk factors for ADHD in children, we found the 9/9 genotype and the 9-6 haplotype associated with persistent ADHD. In conclusion, a differential association of DAT1 with ADHD in children and in adults might help explain the inconsistencies observed in earlier association studies. However, the data might also imply that DAT1 has a modulatory rather than causative role in ADHD.
  • Freathy, R. M., Mook-Kanamori, D. O., Sovio, U., Prokopenko, I., Timpson, N. J., Berry, D. J., Warrington, N. M., Widen, E., Hottenga, J. J., Kaakinen, M., Lange, L. A., Bradfield, J. P., Kerkhof, M., Marsh, J. A., Mägi, R., Chen, C.-M., Lyon, H. N., Kirin, M., Adair, L. S., Aulchenko, Y. S. and 64 moreFreathy, R. M., Mook-Kanamori, D. O., Sovio, U., Prokopenko, I., Timpson, N. J., Berry, D. J., Warrington, N. M., Widen, E., Hottenga, J. J., Kaakinen, M., Lange, L. A., Bradfield, J. P., Kerkhof, M., Marsh, J. A., Mägi, R., Chen, C.-M., Lyon, H. N., Kirin, M., Adair, L. S., Aulchenko, Y. S., Bennett, A. J., Borja, J. B., Bouatia-Naji, N., Charoen, P., Coin, L. J. M., Cousminer, D. L., de Geus, E. J. C., Deloukas, P., Elliott, P., Evans, D. M., Froguel, P., Glaser, B., Groves, C. J., Hartikainen, A.-L., Hassanali, N., Hirschhorn, J. N., Hofman, A., Holly, J. M. P., Hyppönen, E., Kanoni, S., Knight, B. A., Laitinen, J., Lindgren, C. M., McArdle, W. L., O'Reilly, P. F., Pennell, C. E., Postma, D. S., Pouta, A., Ramasamy, A., Rayner, N. W., Ring, S. M., Rivadeneira, F., Shields, B. M., Strachan, D. P., Surakka, I., Taanila, A., Tiesler, C., Uitterlinden, A. G., van Duijn, C. M., Wijga, A. H., Willemsen, G., Zhang, H., Zhao, J., Wilson, J. F., Steegers, E. A. P., Hattersley, A. T., Eriksson, J. G., Peltonen, L., Mohlke, K. L., Grant, S. F. A., Hakonarson, H., Koppelman, G. H., Dedoussis, G. V., Heinrich, J., Gillman, M. W., Palmer, L. J., Frayling, T. M., Boomsma, D. I., Davey Smith, G., Power, C., Jaddoe, V. W. V., Jarvelin, M.-R., McCarthy, M. I., The Genetic Investigation of ANthropometric Traits (GIANT) Consortium, The Meta-Analyses of Glucose and Insulin-related traits Consortium (MAGIC), The Wellcome Trust Case Control Consortium (WTCCC), & the Early Growth Genetics (EGG) Consortium (2010). Variants in ADCY5 and near CCNL1 are associated with fetal growth and birth weight. Nature Genetics, 42(5), 430-435. doi:10.1038/ng.567.

    Abstract

    To identify genetic variants associated with birth weight, we meta-analyzed six genome-wide association (GWA) studies (n = 10,623 Europeans from pregnancy/birth cohorts) and followed up two lead signals in 13 replication studies (n = 27,591). rs900400 near LEKR1 and CCNL1 (P = 2 x 10(-35)) and rs9883204 in ADCY5 (P = 7 x 10(-15)) were robustly associated with birth weight. Correlated SNPs in ADCY5 were recently implicated in regulation of glucose levels and susceptibility to type 2 diabetes, providing evidence that the well-described association between lower birth weight and subsequent type 2 diabetes has a genetic component, distinct from the proposed role of programming by maternal nutrition. Using data from both SNPs, we found that the 9% of Europeans carrying four birth weight-lowering alleles were, on average, 113 g (95% CI 89-137 g) lighter at birth than the 24% with zero or one alleles (P(trend) = 7 x 10(-30)). The impact on birth weight is similar to that of a mother smoking 4-5 cigarettes per day in the third trimester of pregnancy.
  • De La Fuente, J., Casasanto, D., Román, A., & Santiago, J. (2011). Searching for cultural influences on the body-specific association of preferred hand and emotional valence. In L. Carlson, C. Holscher, & T. Shipley (Eds.), Proceedings of the 33rd Annual Meeting of the Cognitive Science Society (pp. 2616-2620). Austin, TX: Cognitive Science Society.
  • Furman, R., Ozyurek, A., & Küntay, A. C. (2010). Early language-specificity in Turkish children's caused motion event expressions in speech and gesture. In K. Franich, K. M. Iserman, & L. L. Keil (Eds.), Proceedings of the 34th Boston University Conference on Language Development. Volume 1 (pp. 126-137). Somerville, MA: Cascadilla Press.
  • Galke, L., Vagliano, I., Franke, B., Zielke, T., & Scherp, A. (2023). Lifelong learning on evolving graphs under the constraints of imbalanced classes and new classes. Neural networks, 164, 156-176. doi:10.1016/j.neunet.2023.04.022.

    Abstract

    Lifelong graph learning deals with the problem of continually adapting graph neural network (GNN) models to changes in evolving graphs. We address two critical challenges of lifelong graph learning in this work: dealing with new classes and tackling imbalanced class distributions. The combination of these two challenges is particularly relevant since newly emerging classes typically resemble only a tiny fraction of the data, adding to the already skewed class distribution. We make several contributions: First, we show that the amount of unlabeled data does not influence the results, which is an essential prerequisite for lifelong learning on a sequence of tasks. Second, we experiment with different label rates and show that our methods can perform well with only a tiny fraction of annotated nodes. Third, we propose the gDOC method to detect new classes under the constraint of having an imbalanced class distribution. The critical ingredient is a weighted binary cross-entropy loss function to account for the class imbalance. Moreover, we demonstrate combinations of gDOC with various base GNN models such as GraphSAGE, Simplified Graph Convolution, and Graph Attention Networks. Lastly, our k-neighborhood time difference measure provably normalizes the temporal changes across different graph datasets. With extensive experimentation, we find that the proposed gDOC method is consistently better than a naive adaption of DOC to graphs. Specifically, in experiments using the smallest history size, the out-of-distribution detection score of gDOC is 0.09 compared to 0.01 for DOC. Furthermore, gDOC achieves an Open-F1 score, a combined measure of in-distribution classification and out-of-distribution detection, of 0.33 compared to 0.25 of DOC (32% increase).

    Additional information

    Link to preprint version code datasets
  • Gamba, M., Raimondi, T., De Gregorio, C., Valente, D., Carugati, F., Cristiano, W., Ferrario, V., Torti, V., Favaro, L., Friard, O., Giacoma, C., & Ravignani, A. (2023). Rhythmic categories across primate vocal displays. In A. Astolfi, F. Asdrubali, & L. Shtrepi (Eds.), Proceedings of the 10th Convention of the European Acoustics Association Forum Acusticum 2023 (pp. 3971-3974). Torino: European Acoustics Association.

    Abstract

    The last few years have revealed that several species may share the building blocks of Musicality with humans. The recognition of these building blocks (e.g., rhythm, frequency variation) was a necessary impetus for a new round of studies investigating rhythmic variation in animal vocal displays. Singing primates are a small group of primate species that produce modulated songs ranging from tens to thousands of vocal units. Previous studies showed that the indri, the only singing lemur, is currently the only known species that perform duet and choruses showing multiple rhythmic categories, as seen in human music. Rhythmic categories occur when temporal intervals between note onsets are not uniformly distributed, and rhythms with a small integer ratio between these intervals are typical of human music. Besides indris, white-handed gibbons and three crested gibbon species showed a prominent rhythmic category corresponding to a single small integer ratio, isochrony. This study reviews previous evidence on the co-occurrence of rhythmic categories in primates and focuses on the prospects for a comparative, multimodal study of rhythmicity in this clade.
  • Ganushchak, L. Y., Verdonschot, R. G., & Schiller, N. O. (2011). When leaf becomes neuter: Event related potential evidence for grammatical gender transfer in bilingualism. Neuroreport, 22(3), 106-110. doi:10.1097/WNR.0b013e3283427359.

    Abstract

    This study addressed the question as to whether grammatical properties of a first language are transferred to a second language. Dutch-English bilinguals classified Dutch words in white print according to their grammatical gender and colored words (i.e. Dutch common and neuter words, and their English translations) according to their color. Both the classifications were made with the same hand (congruent trials) or different hands (incongruent trials). Performance was more erroneous and the error-elated negativity was enhanced on incongruent compared with congruent trials. This effect was independent of the language in which words were presented. These results provide evidence for the fact thatbilinguals may transfer grammatical characteristics oftheir first language to a second language, even when such characteristics are absent in the grammar of the latter.

    Files private

    Request files
  • Ganushchak, L. Y., Krott, A., & Meyer, A. S. (2010). Electroencephalographic responses to SMS shortcuts. Brain Research, 1348, 120-127. doi:10.1016/j.brainres.2010.06.026.

    Abstract

    As the popularity of sending messages electronically increases, so does the necessity of conveying messages more efficiently. One way of increasing efficiency is to abbreviate words and expressions by combining letters with numbers such as gr8 for “great,” using acronyms, such as lol for “laughing out loud,” or clippings such as msg for “message.” The present study compares the processing of shortcuts to the processing of closely matched pseudo-shortcuts. ERPs were recorded while participants were performing a lexical decision task. Response times showed that shortcuts were categorized more slowly as nonwords than pseudo-shortcuts. The ERP results showed no differences between shortcuts and pseudo-shortcuts at time windows 50–150 ms and 150–270 ms, but there were significant differences between 270 and 500 ms. These results suggest that at early stages of word recognition, the orthographic and phonological processing is similar for shortcuts and pseudo-shortcuts. However, at the time of lexical access, shortcuts diverge from pseudo-shortcuts, suggesting that shortcuts activate stored lexical representations.
  • Ganushchak, L. Y., & Schiller, N. O. (2010). Detection of speech errors in the speech of others: An ERP study. NeuroImage, 49, 3331-3337. doi:10.1016/j.neuroimage.2009.11.063.

    Abstract

    The current event-related brain potential study examined the processing of observed speech errors.
    Participants were asked to detect errors in the speech of others while listening to the description of a visual
    network. Networks consisted of colored drawings of objects connected by straight or curved lines. We
    investigated the processing of two types of errors in the network descriptions, i.e., incorrect color and errors
    in determiners usage (gender agreement violations). In the 100- to 300-ms and 300- to 550-ms time
    windows, we found larger PMN and N400 amplitudes for both color and determiner error trials compared to
    correct trials. Furthermore, color but not determiner errors led to larger P600 amplitudes compared to
    correct color trials. Color errors also showed enhanced P600 amplitudes compared to determiner errors.
    Taken together, processing erroneous network descriptions elicits different brain potentials than listening to
    the corresponding correct utterances. Hence, speech is monitored for errors not only during speech
    production but also during listening to the naturally occurring speech of others.
  • Ganushchak, L. Y., Krott, A., & Meyer, A. S. (2010). Is it a letter? Is it a number? Processing of numbers within SMS shortcuts. Psychonomic Bulletin & Review, 17, 101-105. doi:10.3758/PBR.17.1.101.

    Abstract

    For efficiency reasons, words in electronic messages are sometimes formed by combining letters with numbers, as in gr8 for “great.” The aim of this study was to investigate whether a digit incorporated into a letter—digit shortcut would retain its numerosity. A priming paradigm was used with letter—digit shortcuts (e.g., gr8) and matched pseudoshortcuts (e.g., qr8) as primes. The primes were presented simultaneously with sets of dots (targets) for which even/odd decisions were required, or they appeared 250 msec before target onset. When pseudoshortcuts were presented, decision latencies were shorter when the target and the digit in the prime were matched in parity than when they were mismatched. This main effect of match was not significant for shortcuts. The results suggest that the number concepts of digits combined with letters become activated but are quickly suppressed or deactivated when the digit is part of an existing shortcut.
  • Ganushchak, L. Y., Christoffels, I., & Schiller, N. (2011). The use of electroencephalography (EEG) in language production research: A review. Frontiers in Psychology, 2, 208. doi:10.3389/fpsyg.2011.00208.

    Abstract

    Speech production long avoided electrophysiological experiments due to the suspicion that potential artifacts caused by muscle activity of overt speech may lead to a bad signal-to-noise ratio in the measurements. Therefore, researchers have sought to assess speech production by using indirect speech production tasks, such as tacit or implicit naming, delayed naming, or metalinguistic tasks, such as phoneme monitoring. Covert speech may, however, involve different processes than overt speech production. Recently, overt speech has been investigated using EEG. As the number of papers published is rising steadily, this clearly indicates the increasing interest and demand for overt speech research within the field of cognitive neuroscience of language. Our main goal here is to review all currently available results of overt speech production involving EEG measurements, such as picture naming, Stroop naming, and reading aloud. We conclude that overt speech production can be successfully studied using electrophysiological measures, for instance, event-related brain potentials (ERPs). We will discuss possible relevant components in the ERP waveform of speech production and aim to address the issue of how to interpret the results of ERP research using overt speech, and whether the ERP components in language production are comparable to results from other fields.
  • Garcia, R., Roeser, J., & Kidd, E. (2023). Finding your voice: Voice-specific effects in Tagalog reveal the limits of word order priming. Cognition, 236: 105424. doi:10.1016/j.cognition.2023.105424.

    Abstract

    The current research investigated structural priming in Tagalog, a symmetrical voice language containing rich verbal morphology that results in changes in mapping between syntactic positions and thematic roles. This grammatically rare feature, which results in multiple transitive structures that are balanced in terms of the grammatical status of their arguments, provides the opportunity to test whether word order priming is sensitive to the voice morphology of the verb. In three sentence priming experiments (Ns = 64), we manipulated whether the target-verb prompt carried the same voice as the verb in the prime sentence. In all experiments, priming occurred only when the prime and target had the same voice morphology. Additionally, we found that the strength of word order priming depends on voice: stronger priming effects were found for the voice morpheme associated with a more flexible word order. The findings are consistent with learning-based accounts where language-specific representations for syntax emerge across developmental time. We discuss the implications of these results in the context of Tagalog's grammar. The results reveal the value of crosslinguistic data for theory-testing, and the value of structural priming in determining the representational nature of linguistic structure.

    Additional information

    data and analysis scripts
  • Garcia, R., Albert, H. M. D., Bondoc, I. P., & Marzan, J. C. B. (2023). Collecting language acquisition data from understudied urban communities: A reply to Cristia et al. Journal of Child Language, 50(3), 522-526. doi:10.1017/S0305000922000721.

    Abstract

    In the target article, Cristia, Foushee, Aravena-Bravo, Cychosz, Scaff, and Casillas (2022) convincingly show the need to broaden the current language acquisition research base, not only in linguistic diversity, but also in terms of regions and cultural groups studied. In conducting acquisition research in understudied populations, such as in rural settings, the authors highlight the importance of using a multi-method approach. They present the challenges in adapting these methods to new settings and offer possible ways to promote this type of research. In this commentary, we extend the discussion to understudied urban communities, as we encounter several of the concerns raised in Cristia et al. when collecting observational and experimental language acquisition data from Metro Manila, Philippines. We first describe the community we study, the challenges and modifications needed for conducting research in this setting, and end with a discussion of possible strategies to promote research in communities with understudied populations.
  • Garrido Rodriguez, G., Norcliffe, E., Brown, P., Huettig, F., & Levinson, S. C. (2023). Anticipatory processing in a verb-initial Mayan language: Eye-tracking evidence during sentence comprehension in Tseltal. Cognitive Science, 47(1): e13292. doi:10.1111/cogs.13219.

    Abstract

    We present a visual world eye-tracking study on Tseltal (a Mayan language) and investigate whether verbal information can be used to anticipate an upcoming referent. Basic word order in transitive sentences in Tseltal is Verb-Object-Subject (VOS). The verb is usually encountered first, making argument structure and syntactic information available at the outset, which should facilitate anticipation of the post-verbal arguments. Tseltal speakers listened to verb-initial sentences with either an object-predictive verb (e.g., ‘eat’) or a general verb (e.g., ‘look for’) (e.g., “Ya slo’/sle ta stukel on te kereme”, Is eating/is looking (for) by himself the avocado the boy/ “The boy is eating/is looking (for) an avocado by himself”) while seeing a visual display showing one potential referent (e.g., avocado) and three distractors (e.g., bag, toy car, coffee grinder). We manipulated verb type (predictive vs. general) and recorded participants' eye-movements while they listened and inspected the visual scene. Participants’ fixations to the target referent were analysed using multilevel logistic regression models. Shortly after hearing the predictive verb, participants fixated the target object before it was mentioned. In contrast, when the verb was general, fixations to the target only started to increase once the object was heard. Our results suggest that Tseltal hearers pre-activate semantic features of the grammatical object prior to its linguistic expression. This provides evidence from a verb-initial language for online incremental semantic interpretation and anticipatory processing during language comprehension. These processes are comparable to the ones identified in subject-initial languages, which is consistent with the notion that different languages follow similar universal processing principles.
  • Gaub, S., Groszer, M., Fisher, S. E., & Ehret, G. (2010). The structure of innate vocalizations in Foxp2-deficient mouse pups. Genes, Brain and Behavior, 9, 390-401. doi:10.1111/j.1601-183X.2010.00570.x.

    Abstract

    Heterozygous mutations of the human FOXP2 gene are implicated in a severe speech and language disorder. Aetiological mutations of murine Foxp2 yield abnormal synaptic plasticity and impaired motor-skill learning in mutant mice, while knockdown of the avian orthologue in songbirds interferes with auditory-guided vocal learning. Here, we investigate influences of two distinct Foxp2 point mutations on vocalizations of 4-day-old mouse pups (Mus musculus). The R552H missense mutation is identical to that causing speech and language deficits in a large well-studied human family, while the S321X nonsense mutation represents a null allele that does not produce Foxp2 protein. We ask whether vocalizations, based solely on innate mechanisms of production, are affected by these alternative Foxp2 mutations. Sound recordings were taken in two different situations: isolation and distress, eliciting a range of call types, including broadband vocalizations of varying noise content, ultrasonic whistles and clicks. Sound production rates and several acoustic parameters showed that, despite absence of functional Foxp2, homozygous mutants could vocalize all types of sounds in a normal temporal pattern, but only at comparably low intensities. We suggest that altered vocal output of these homozygotes may be secondary to developmental delays and somatic weakness. Heterozygous mutants did not differ from wild-types in any of the measures that we studied (R552H ) or in only a few (S321X ), which were in the range of differences routinely observed for different mouse strains. Thus, Foxp2 is not essential for the innate production of emotional vocalizations with largely normal acoustic properties by mouse pups.
  • Gebre, B. G. (2010). Part of speech tagging for Amharic. Master Thesis, University of Wolverhampton, Wolverhampton.
  • Gertz, J., Varley, K. E., Reddy, T. E., Bowling, K. M., Pauli, F., Parker, S. L., Kucera, K. S., Willard, H. F., & Myers, R. M. (2011). Analysis of DNA Methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation. PLoS Genetics, 7, e1002228. doi:10.1371/journal.pgen.1002228.

    Abstract

    The methylation of cytosines in CpG dinucleotides is essential for cellular differentiation and the progression of many cancers, and it plays an important role in gametic imprinting. To assess variation and inheritance of genome-wide patterns of DNA methylation simultaneously in humans, we applied reduced representation bisulfite sequencing (RRBS) to somatic DNA from six members of a three-generation family. We observed that 8.1% of heterozygous SNPs are associated with differential methylation in cis, which provides a robust signature for Mendelian transmission and relatedness. The vast majority of differential methylation between homologous chromosomes (>92%) occurs on a particular haplotype as opposed to being associated with the gender of the parent of origin, indicating that genotype affects DNA methylation of far more loci than does gametic imprinting. We found that 75% of genotype-dependent differential methylation events in the family are also seen in unrelated individuals and that overall genotype can explain 80% of the variation in DNA methylation. These events are under-represented in CpG islands, enriched in intergenic regions, and located in regions of low evolutionary conservation. Even though they are generally not in functionally constrained regions, 22% (twice as many as expected by chance) of genes harboring genotype-dependent DNA methylation exhibited allele-specific gene expression as measured by RNA-seq of a lymphoblastoid cell line, indicating that some of these events are associated with gene expression differences. Overall, our results demonstrate that the influence of genotype on patterns of DNA methylation is widespread in the genome and greatly exceeds the influence of imprinting on genome-wide methylation patterns.
  • Geurts, H. M., Broeders, m., & Nieuwland, M. S. (2010). Thinking outside the executive functions box: Theory of mind and pragmatic abilities in attention deficit/hyperactivity disorder. European Journal of Developmental Psychology, 7(1), 135-151. doi:10.1080/17405620902906965.

    Abstract

    An endophenotype for attention deficit/hyperactivity disorder (AD/HD) is executive functioning. In the autism and developmental literature executive dysfunctions has also been linked to theory of mind (ToM) and pragmatic language use. The central question of this review is whether deficits in ToM and pragmatic language use are common in AD/HD. AD/HD seems to be associated with pragmatic deficits, but not with ToM deficits. In this review we address how this pattern of findings might facilitate the understanding of the commonalities and differences between executive functioning, ToM, and pragmatic abilities. Based on the reviewed studies we conclude that ToM is not likely to be a potential endophenotype for AD/HD, while it is too early to draw such a conclusion for pragmatic language use.
  • Giering, E., Sheer, R., Tinbergen, M., & Verbunt, A. (2011). Research Report 2009 | 2010. Nijmegen: Max Planck Institute for Psycholinguistics.
  • Giglio, L. (2023). Speaking in the Brain: How the brain produces and understands language. PhD Thesis, Radboud University Nijmegen, Nijmegen.
  • Gillespie, K., & San Roque, L. (2011). Music and language in Duna pikono. In A. Rumsey, & D. Niles (Eds.), Sung tales from the Papua New Guinea Highlands: Studies in form, meaning and sociocultural context (pp. 49-63). Canberra: ANU E Press.
  • Gipper, S. (2011). Evidentiality and intersubjectivity in Yurakaré: An interactional account. PhD Thesis, Radboud University Nijmegen, Nijmegen.
  • Glaser, B., Gunnell, D., Timpson, N. J., Joinson, C., Zammit, S., Smith, G. D., & Lewis, G. (2011). Age- and puberty-dependent association between IQ score in early childhood and depressive symptoms in adolescence. Psychological Medicine, 41(2), 333-343. doi:10.1017/S0033291710000814.

    Abstract

    BACKGROUND: Lower cognitive functioning in early childhood has been proposed as a risk factor for depression in later life but its association with depressive symptoms during adolescence has rarely been investigated. Our study examines the relationship between total intelligence quotient (IQ) score at age 8 years, and depressive symptoms at 11, 13, 14 and 17 years. METHOD: Study participants were 5250 children and adolescents from the Avon Longitudinal Study of Parents and their Children (ALSPAC), UK, for whom longitudinal data on depressive symptoms were available. IQ was assessed with the Wechsler Intelligence Scale for Children III, and self-reported depressive symptoms were measured with the Short Mood and Feelings Questionnaire (SMFQ). RESULTS: Multi-level analysis on continuous SMFQ scores showed that IQ at age 8 years was inversely associated with depressive symptoms at age 11 years, but the association changed direction by age 13 and 14 years (age-IQ interaction, p<}0.0001; age squared-IQ interaction, p{<}0.0001) when a higher IQ score was associated with a higher risk of depressive symptoms. This change in IQ effect was also found in relation to pubertal stage (pubertal stage-IQ interaction, 0.00049{

    Additional information

    S0033291710000814sup001.doc
  • Glaser, B., Ades, A. E., Lewis, S., Emmet, P., Lewis, G., Smith, G. D., & Zammit, S. (2010). Perinatal folate-related exposures and risk of psychotic symptoms in the ALSPAC birth cohort. Schizophrenia Research, 120, 177-183. doi:10.1016/j.schres.2010.03.006.

    Abstract

    BACKGROUND: It is unclear to what extent non-clinical psychotic experiences during childhood and adolescence share underlying aetiological mechanisms with schizophrenia. One candidate mechanism for schizophrenia involves the epigenetic status of the developing fetus, which depends on the internal folate-status of mother and child. Our study examines the relationships between multiple determinants of perinatal folate-status and development of psychotic experiences in adolescence. METHODS: Study participants were up to 5344 mother-child pairs from the Avon Longitudinal Study of Parents and their Children, UK, with information on maternal and/or child MTHFR C677T genotype, maternal folate intake (supplementation at 18/32- weeks gestation; dietary intake at 32- weeks gestation) and psychosis-like symptoms (PLIKS) for children assessed at age 12. RESULTS: Nominal evidence was observed that maternal folate supplementation at 18 weeks increased the odds of PLIKS in children (odds ratio(OR)=1.34; 95%-CI:[1.00;1.76]) and, consistent with this, that children of MTHFR C667T TT homozygous mothers had decreased odds of PLIKS (OR=0.72; 95%CI:[0.50;1.02]; recessive model) with strongest effects in boys (OR=0.44, 95%-CI:[0.22;0.79]; sex-specific p=0.029). None of the reported effects remained significant when corrected for multiple testing. CONCLUSIONS: Overall, this study found no support that maternal/child MTHFR C677T genotype and maternal folate intake during pregnancy contribute to common aetiological pathways that are shared between schizophrenia and non-clinical psychotic symptoms in adolescents, assuming that decreased folate-status increases schizophrenia risk.
  • Glaser, B., Shelton, K. H., & van den Bree, M. B. M. (2010). The moderating role of close friends in the relationship between conduct problems and adolescent substance use. Journal of Adolescent Health, 47(1), 35-42. doi:10.1016/j.jadohealth.2009.12.022.

    Abstract

    PURPOSE: Conduct problems and peer effects are among the strongest risk factors for adolescent substance use and problem use. However, it is unclear to what extent the effects of conduct problems and peer behavior interact, and whether adolescents' capacity to refuse the offer of substances may moderate such links. This study was conducted to examine relationships between conduct problems, close friends' substance use, and refusal assertiveness with adolescents' alcohol use problems, tobacco, and marijuana use. METHODS: We studied a population-based sample of 1,237 individuals from the Cardiff Study of All Wales and North West of England Twins aged 11-18 years. Adolescent and mother-reported information was obtained. Statistical analyses included cross-sectional and prospective logistic regression models and family-based permutations. RESULTS: Conduct problems and close friends' substance use were associated with increased adolescents' substance use, whereas refusal assertiveness was associated with lower use of cigarettes, alcohol, and marijuana. Peer substance use moderated the relationship between conduct problems and alcohol use problems, such that conduct problems were only related to increased risk for alcohol use problems in the presence of substance-using friends. This effect was found in both cross-sectional and prospective analyses and confirmed using the permutation approach. CONCLUSIONS: Reduced opportunities for interaction with alcohol-using peers may lower the risk of alcohol use problems in adolescents with conduct problems.
  • González-Peñas, J., De Hoyos, L., Díaz-Caneja, C. M., Andreu-Bernabeu, Á., Stella, C., Gurriarán, X., Fañanás, L., Bobes, J., González-Pinto, A., Crespo-Facorro, B., Martorell, L., Vilella, E., Muntané, G., Molto, M. D., Gonzalez-Piqueras, J. C., Parellada, M., Arango, C., & Costas, J. (2023). Recent natural selection conferred protection against schizophrenia by non-antagonistic pleiotropy. Scientific Reports, 13: 15500. doi:10.1038/s41598-023-42578-0.

    Abstract

    Schizophrenia is a debilitating psychiatric disorder associated with a reduced fertility and decreased life expectancy, yet common predisposing variation substantially contributes to the onset of the disorder, which poses an evolutionary paradox. Previous research has suggested balanced selection, a mechanism by which schizophrenia risk alleles could also provide advantages under certain environments, as a reliable explanation. However, recent studies have shown strong evidence against a positive selection of predisposing loci. Furthermore, evolutionary pressures on schizophrenia risk alleles could have changed throughout human history as new environments emerged. Here in this study, we used 1000 Genomes Project data to explore the relationship between schizophrenia predisposing loci and recent natural selection (RNS) signatures after the human diaspora out of Africa around 100,000 years ago on a genome-wide scale. We found evidence for significant enrichment of RNS markers in derived alleles arisen during human evolution conferring protection to schizophrenia. Moreover, both partitioned heritability and gene set enrichment analyses of mapped genes from schizophrenia predisposing loci subject to RNS revealed a lower involvement in brain and neuronal related functions compared to those not subject to RNS. Taken together, our results suggest non-antagonistic pleiotropy as a likely mechanism behind RNS that could explain the persistence of schizophrenia common predisposing variation in human populations due to its association to other non-psychiatric phenotypes.
  • Goudbeek, M., & Broersma, M. (2010). The Demo/Kemo corpus: A principled approach to the study of cross-cultural differences in the vocal expression and perception of emotion. In Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010) (pp. 2211-2215). Paris: ELRA.

    Abstract

    This paper presents the Demo / Kemo corpus of Dutch and Korean emotional speech. The corpus has been specifically developed for the purpose of cross-linguistic comparison, and is more balanced than any similar corpus available so far: a) it contains expressions by both Dutch and Korean actors as well as judgments by both Dutch and Korean listeners; b) the same elicitation technique and recording procedure was used for recordings of both languages; c) the same nonsense sentence, which was constructed to be permissible in both languages, was used for recordings of both languages; and d) the emotions present in the corpus are balanced in terms of valence, arousal, and dominance. The corpus contains a comparatively large number of emotions (eight) uttered by a large number of speakers (eight Dutch and eight Korean). The counterbalanced nature of the corpus will enable a stricter investigation of language-specific versus universal aspects of emotional expression than was possible so far. Furthermore, given the carefully controlled phonetic content of the expressions, it allows for analysis of the role of specific phonetic features in emotional expression in Dutch and Korean.
  • Graham, S. A., Antonopoulos, A., Hitchen, P. G., Haslam, S. M., Dell, A., Drickamer, K., & Taylor, M. E. (2011). Identification of neutrophil granule glycoproteins as Lewisx-containing ligands cleared by the scavenger receptor C-type lectin. Journal of Biological Chemistry, 286, 24336-24349. doi:10.1074/jbc.M111.244772.

    Abstract

    The scavenger receptor C-type lectin (SRCL) is a glycan-binding receptor that has the capacity to mediate endocytosis of glycoproteins carrying terminal Lewis(x) groups (Galβ1-4(Fucα1-3)GlcNAc). A screen for glycoprotein ligands for SRCL using affinity chromatography on immobilized SRCL followed by mass spectrometry-based proteomic analysis revealed that soluble glycoproteins from secondary granules of neutrophils, including lactoferrin and matrix metalloproteinases 8 and 9, are major ligands. Binding competition and surface plasmon resonance analysis showed affinities in the low micromolar range. Comparison of SRCL binding to neutrophil and milk lactoferrin indicates that the binding is dependent on cell-specific glycosylation in the neutrophils, as the milk form of the glycoprotein is a much poorer ligand. Binding to neutrophil glycoproteins is fucose dependent and mass spectrometry-based glycomic analysis of neutrophil and milk lactoferrin was used to establish a correlation between high affinity binding to SRCL and the presence of multiple, clustered terminal Lewis(x) groups on a heterogeneous mixture of branched glycans, some with poly N-acetyllactosamine extensions. The ability of SRCL to mediate uptake of neutrophil lactoferrin was confirmed using fibroblasts transfected with SRCL. The common presence of Lewis(x) groups in granule protein glycans can thus target granule proteins for clearance by SRCL. PCR and immunohistochemical analysis confirms that SRCL is widely expressed on endothelial cells and thus represents a distributed system which could scavenge released neutrophil glycoproteins both locally at sites of inflammation or systemically when they are released in the circulation.

    Additional information

    graham_supp_info.pdf
  • Green, K., Osei-Cobbina, C., Perlman, M., & Kita, S. (2023). Infants can create different types of iconic gestures, with and without parental scaffolding. In W. Pouw, J. Trujillo, H. R. Bosker, L. Drijvers, M. Hoetjes, J. Holler, S. Kadava, L. Van Maastricht, E. Mamus, & A. Ozyurek (Eds.), Gesture and Speech in Interaction (GeSpIn) Conference. doi:10.17617/2.3527188.

    Abstract

    Despite the early emergence of pointing, children are generally not documented to produce iconic gestures until later in development. Although research has described this developmental trajectory and the types of iconic gestures that emerge first, there has been limited focus on iconic gestures within interactional contexts. This study identified the first 10 iconic gestures produced by five monolingual English-speaking children in a naturalistic longitudinal video corpus and analysed the interactional contexts. We found children produced their first iconic gesture between 12 and 20 months and that gestural types varied. Although 34% of gestures could have been imitated or derived from adult or child actions in the preceding context, the majority were produced independently of any observed model. In these cases, adults often led the interaction in a direction where iconic gesture was an appropriate response. Overall, we find infants can represent a referent symbolically and possess a greater capacity for innovation than previously assumed. In order to develop our understanding of how children learn to produce iconic gestures, it is important to consider the immediate interactional context. Conducting naturalistic corpus analyses could be a more ecologically valid approach to understanding how children learn to produce iconic gestures in real life contexts.
  • Groen, W. B., Tesink, C. M. J. Y., Petersson, K. M., Van Berkum, J. J. A., Van der Gaag, R. J., Hagoort, P., & Buitelaar, J. K. (2010). Semantic, factual, and social language comprehension in adolescents with autism: An fMRI study. Cerebral Cortex, 20(8), 1937-1945. doi:10.1093/cercor/bhp264.

    Abstract

    Language in high-functioning autism is characterized by pragmatic and semantic deficits, and people with autism have a reduced tendency to integrate information. Because the left and right inferior frontal (LIF and RIF) regions are implicated with integration of speaker information, world knowledge, and semantic knowledge, we hypothesized that abnormal functioning of the LIF and RIF regions might contribute to pragmatic and semantic language deficits in autism. Brain activation of sixteen 12- to 18-year-old, high-functioning autistic participants was measured with functional magnetic resonance imaging during sentence comprehension and compared with that of twenty-six matched controls. The content of the pragmatic sentence was congruent or incongruent with respect to the speaker characteristics (male/female, child/adult, and upper class/lower class). The semantic- and world-knowledge sentences were congruent or incongruent with respect to semantic expectancies and factual expectancies about the world, respectively. In the semanticknowledge and world-knowledge condition, activation of the LIF region did not differ between groups. In sentences that required integration of speaker information, the autism group showed abnormally reduced activation of the LIF region. The results suggest that people with autism may recruit the LIF region in a different manner in tasks that demand integration of social information.
  • Gubian, M., Bergmann, C., & Boves, L. (2010). Investigating word learning processes in an artificial agent. In Proceedings of the IXth IEEE International Conference on Development and Learning (ICDL). Ann Arbor, MI, 18-21 Aug. 2010 (pp. 178 -184). IEEE.

    Abstract

    Researchers in human language processing and acquisition are making an increasing use of computational models. Computer simulations provide a valuable platform to reproduce hypothesised learning mechanisms that are otherwise very difficult, if not impossible, to verify on human subjects. However, computational models come with problems and risks. It is difficult to (automatically) extract essential information about the developing internal representations from a set of simulation runs, and often researchers limit themselves to analysing learning curves based on empirical recognition accuracy through time. The associated risk is to erroneously deem a specific learning behaviour as generalisable to human learners, while it could also be a mere consequence (artifact) of the implementation of the artificial learner or of the input coding scheme. In this paper a set of simulation runs taken from the ACORNS project is investigated. First a look `inside the box' of the learner is provided by employing novel quantitative methods for analysing changing structures in large data sets. Then, the obtained findings are discussed in the perspective of their ecological validity in the field of child language acquisition.
  • Le Guen, O. (2011). Materiality vs. expressivity: The use of sensory vocabulary in Yucatec Maya. The Senses & Society, 6(1), 117-126. doi:10.2752/174589311X12893982233993.

    Abstract

    In this article, sensory vocabulary relating to color, texture, and other sensory experiences in Yucatec Maya (a language spoken in Mexico) is examined, and its possible relation to material culture practices explored. In Yucatec Maya, some perceptual experience can be expressed in a fine-grained way through a compact one-word adjective. Complex notions can be succinctly expressed by combining roots with a general meaning and applying templates or compounds to those sensory roots. For instance, the root tak’, which means ‘adhere/adherence,’ can be derived to express the notion of ‘dirty red’ chak-tak’-e’en or ‘sticky with an unbounded pattern’ tak’aknak, or the root ts’ap ‘piled-up’ can express ‘several tones of green (e.g. in the forest)’ ya’axts’ape’en or ‘piled-up, known through a tactile experience’ ts’aplemak. The productive nature of this linguistic system seems at first glance to be very well fitted to orient practices relating to the production of local material culture. In examining several hours of video-recorded natural data contrasting work and non-work directed interactions, it emerges that sensory vocabulary is not used for calibrating knowledge but is instead recruited by speakers to achieve vividness in an effort to verbally reproduce the way speakers experience percepts
  • Le Guen, O. (2011). Modes of pointing to existing spaces and the use of frames of reference. Gesture, 11, 271-307. doi:10.1075/gest.11.3.02leg.

    Abstract

    This paper aims at providing a systematic framework for investigating differences in how people point to existing spaces. Pointing is considered according to two conditions: (1) A non-transposed condition where the body of the speaker always constitutes the origo and where the various types of pointing are differentiated by the status of the target and (2) a transposed condition where both the distant figure and the distant ground are identified and their relation specified according to two frames of reference (FoRs): the egocentric FoR (where spatial relationships are coded with respect to the speaker's point of view) and the geocentric FoR (where spatial relationships are coded in relation to external cues in the environment). The preference for one or the other frame of reference not only has consequences for pointing to real spaces but has some resonance in other domains, constraining the production of gesture in these related domains.
  • Le Guen, O. (2011). Speech and gesture in spatial language and cognition among the Yucatec Mayas. Cognitive Science, 35, 905-938. doi:10.1111/j.1551-6709.2011.01183.x.

    Abstract

    In previous analyses of the influence of language on cognition, speech has been the main channel examined. In studies conducted among Yucatec Mayas, efforts to determine the preferred frame of reference in use in this community have failed to reach an agreement (Bohnemeyer & Stolz, 2006; Levinson, 2003 vs. Le Guen, 2006, 2009). This paper argues for a multimodal analysis of language that encompasses gesture as well as speech, and shows that the preferred frame of reference in Yucatec Maya is only detectable through the analysis of co-speech gesture and not through speech alone. A series of experiments compares knowledge of the semantics of spatial terms, performance on nonlinguistic tasks and gestures produced by men and women. The results show a striking gender difference in the knowledge of the semantics of spatial terms, but an equal preference for a geocentric frame of reference in nonverbal tasks. In a localization task, participants used a variety of strategies in their speech, but they all exhibited a systematic preference for a geocentric frame of reference in their gestures.
  • Guest, O., & Martin, A. E. (2023). On logical inference over brains, behaviour, and artificial neural networks. Computational Brain & Behavior, 6, 213-227. doi:10.1007/s42113-022-00166-x.

    Abstract

    In the cognitive, computational, and neuro-sciences, practitioners often reason about what computational models represent or learn, as well as what algorithm is instantiated. The putative goal of such reasoning is to generalize claims about the model in question, to claims about the mind and brain, and the neurocognitive capacities of those systems. Such inference is often based on a model’s performance on a task, and whether that performance approximates human behavior or brain activity. Here we demonstrate how such argumentation problematizes the relationship between models and their targets; we place emphasis on artificial neural networks (ANNs), though any theory-brain relationship that falls into the same schema of reasoning is at risk. In this paper, we model inferences from ANNs to brains and back within a formal framework — metatheoretical calculus — in order to initiate a dialogue on both how models are broadly understood and used, and on how to best formally characterize them and their functions. To these ends, we express claims from the published record about models’ successes and failures in first-order logic. Our proposed formalization describes the decision-making processes enacted by scientists to adjudicate over theories. We demonstrate that formalizing the argumentation in the literature can uncover potential deep issues about how theory is related to phenomena. We discuss what this means broadly for research in cognitive science, neuroscience, and psychology; what it means for models when they lose the ability to mediate between theory and data in a meaningful way; and what this means for the metatheoretical calculus our fields deploy when performing high-level scientific inference.
  • Gullberg, M., Roberts, L., Dimroth, C., Veroude, K., & Indefrey, P. (2010). Adult language learning after minimal exposure to an unknown natural language. In M. Gullberg, & P. Indefrey (Eds.), The earliest stages of language learning (pp. 5-24). Malden, MA: Wiley-Blackwell.
  • Gullberg, M., Roberts, L., Dimroth, C., Veroude, K., & Indefrey, P. (2010). Adult language learning after minimal exposure to an unknown natural language. Language Learning, 60(S2), 5-24. doi:10.1111/j.1467-9922.2010.00598.x.

    Abstract

    Despite the literature on the role of input in adult second-language (L2) acquisition and on artificial and statistical language learning, surprisingly little is known about how adults break into a new language in the wild. This article reports on a series of behavioral and neuroimaging studies that examine what linguistic information adults can extract from naturalistic but controlled audiovisual input in an unknown and typologically distant L2 after minimal exposure (7–14 min) without instruction or training. We tested the stepwise development of segmental, phonotactic, and lexical knowledge in Dutch adults after minimal exposure to Mandarin Chinese and the role of item frequency, speech-associated gestures, and word length at the earliest stages of learning. In an exploratory neural connectivity study we further examined the neural correlates of word recognition in a new language, identifying brain regions whose connectivity was related to performance both before and after learning. While emphasizing the complexity of the learning task, the results suggest that the adult learning mechanism is more powerful than is normally assumed when faced with small amounts of complex, continuous audiovisual language input.
  • Gullberg, M., De Bot, K., & Volterra, V. (2010). Gestures and some key issues in the study of language development. In M. Gullberg, & K. De Bot (Eds.), Gestures in language development (pp. 3-33). Amsterdam: Benjamins.
  • Gullberg, M., & De Bot, K. (Eds.). (2010). Gestures in language development. Amsterdam: Benjamins.

    Abstract

    Gestures are prevalent in communication and tightly linked to language and speech. As such they can shed important light on issues of language development across the lifespan. This volume, originally published as a Special Issue of Gesture Volume 8:2 (2008), brings together studies from different disciplines that examine language development in children and adults from varying perspectives. It provides a review of common theoretical and empirical themes, and the contributions address topics such as gesture use in prelinguistic infants, the relationship between gestures and lexical development in typically and atypically developing children and in second language learners, what gestures reveal about discourse, and how all languages that adult second language speakers know can influence each other. The papers exemplify a vibrant new field of study with relevance for multiple disciplines.
  • Gullberg, M. (2010). Methodological reflections on gesture analysis in second language acquisition and bilingualism research. Second Language Research, 26(1), 75-102. doi:10.1177/0267658309337639.

    Abstract

    Gestures, the symbolic movements speakers perform while they speak, form a closely inter-connected system with speech where gestures serve both addressee-directed (‘communicative’) and speaker-directed (’internal’) functions. This paper aims (1) to show that a combined analysis of gesture and speech offers new ways to address theoretical issues in SLA and bilingualism studies, probing SLA and bilingualism as product and process; and (2) to outline some methodological concerns and desiderata to facilitate the inclusion of gesture in SLA and bilingualism research.
  • Gullberg, M. (2011). Multilingual multimodality: Communicative difficulties and their solutions in second-language use. In J. Streeck, C. Goodwin, & C. LeBaron (Eds.), Embodied interaction: Language and body in the material world (pp. 137-151). Cambridge: Cambridge University Press.

    Abstract

    Using a poorly mastered second language (L2) in interaction with a native speaker is a challenging task. This paper explores how L2 speakers and their native interlocutors together deploy gestures and speech to sustain problematic interaction. Drawing on native and non-native interactions in Swedish, French, and Dutch, I examine lexical, grammatical and interaction-related problems in turn. The analyses reveal that (a) different problems yield behaviours with different formal and interactive properties that are common across the language pairs and the participant roles; (b) native and non-native behaviour differs in degree, not in kind; and (c) that individual communicative style determines behaviour more than the gravity of the linguistic problem. I discuss the implications for theories opposing 'efficient' L2 communication to learning. Also, contra the traditional view of compensatory gestures, I will argue for a multi-functional 'hydraulic' view grounded in gesture theory where speech and gesture are equal partners, but where the weight carried by the modalities shifts depending on expressive pressures.
  • Gullberg, M. (2011). Language-specific encoding of placement events in gestures. In J. Bohnemeyer, & E. Pederson (Eds.), Event representation in language and cognition (pp. 166-188). New York: Cambridge University Press.

    Abstract

    This study focuses on the effect of the semantics of placement verbs on placement event representations. Specifically, it explores to what extent the semantic properties of habitually used verbs guide attention to certain types of spatial information. French, which typically uses a general placement verb (mettre, 'put'), is contrasted with Dutch, which uses a set of fine-grained (semi-)obligatory posture verbs (zetten, leggen, 'set/stand', 'lay'). Analysis of the concomitant gesture production in the two languages reveals a patterning toward two distinct, language-specific event representations. The object being placed is an essential part of the Dutch representation, while French speakers instead focus only on the (path of the) placement movement. These perspectives permeate the entire placement domain regardless of the actual verb used.
  • Gullberg, M., & Indefrey, P. (Eds.). (2010). The earliest stages of language learning. Malden, MA: Wiley-Blackwell.

    Abstract

    To understand the nature of language learning, the factors that influence it, and the mechanisms that govern it, it is crucial to study the very earliest stages of language learning. This volume provides a state-of-the art overview of what we know about the cognitive and neurobiological aspects of the adult capacity for language learning. It brings together studies from several fields that examine learning from multiple perspectives using various methods. The papers examine learning after anything from a few minutes to months of language exposure; they target the learning of both artificial and natural languages, involve both explicit and implicit learning, and cover linguistic domains ranging from phonology and semantics to morphosyntax. The findings will inform and extend further studies of language learning in multiple disciplines.
  • Gullberg, M., & Indefrey, P. (Eds.). (2010). The earliest stages of language learning [Special Issue]. Language Learning, 60(Supplement s2).
  • Gullberg, M., & Narasimhan, B. (2010). What gestures reveal about the development of semantic distinctions in Dutch children's placement verbs. Cognitive Linguistics, 21(2), 239-262. doi:10.1515/COGL.2010.009.

    Abstract

    Placement verbs describe every-day events like putting a toy in a box. Dutch uses two semi-obligatory caused posture verbs (leggen ‘lay’ and zetten ‘set/stand’) to distinguish between events based on whether the located object is placed horizontally or vertically. Although prevalent in the input, these verbs cause Dutch children difficulties even at age five (Narasimhan & Gullberg, submitted). Children overextend leggen to all placement events and underextend use of zetten. This study examines what gestures can reveal about Dutch three- and five-year-olds’ semantic representations of such verbs. The results show that children gesture differently from adults in this domain. Three-year-olds express only the path of the caused motion, whereas five-year-olds, like adults, also incorporate the located object. Crucially, gesture patterns are tied to verb use: those children who over-use leggen 'lay' for all placement events only gesture about path. Conversely, children who use the two verbs differentially for horizontal and vertical placement also incorporate objects in gestures like adults. We argue that children's gestures reflect their current knowledge of verb semantics, and indicate a developmental transition from a system with a single semantic component – (caused) movement – to an (adult-like) focus on two semantic components – (caused) movement-and-object
  • Gullberg, M. (2011). Thinking, speaking, and gesturing about motion in more than one language. In A. Pavlenko (Ed.), Thinking and speaking in two languages (pp. 143-169). Bristol: Multilingual Matters.

    Abstract

    A key problem in studies of bilingual linguistic cognition is how to probe the details of underlying representations in order to gauge whether bilinguals' conceptualizations differ from those of monolinguals, and if so how. This chapter provides an overview of a line of studies that rely on speech-associated gestures to explore these issues. The gestures of adult monolingual native speakers differ systematically across languages, reflecting consistent differences in what information is selected for expression and how it is mapped onto morphosyntactic devices. Given such differences, gestures can provide more detailed information on how multilingual speakers conceptualize events treated differently in their respective languages, and therefore, ultimately, on the nature of their representations. This chapter reviews a series of studies in the domain of (voluntary and caused) motion event construal. I first discuss speech and gesture evidence for different construals in monolingual native speakers, then review studies on second language speakers showing gestural evidence of persistent L1 construals, shifts to L2 construals, and of bidirectional influences. I consider the implications for theories of ultimate attainment in SLA, transfer and convergence. I will also discuss the methodological implications, namely what gesture data do and do not reveal about linguistic conceptualisation and linguistic relativity proper.
  • Guo, Y., Martin, R. C., Hamilton, C., Van Dyke, J., & Tan, Y. (2010). Neural basis of semantic and syntactic interference resolution in sentence comprehension. Procedia - Social and Behavioral Sciences, 6, 88-89. doi:10.1016/j.sbspro.2010.08.045.
  • Habets, B., Kita, S., Shao, Z., Ozyurek, A., & Hagoort, P. (2011). The role of synchrony and ambiguity in speech–gesture integration during comprehension. Journal of Cognitive Neuroscience, 23, 1845-1854. doi:10.1162/jocn.2010.21462.

    Abstract

    During face-to-face communication, one does not only hear speech but also see a speaker's communicative hand movements. It has been shown that such hand gestures play an important role in communication where the two modalities influence each other's interpretation. A gesture typically temporally overlaps with coexpressive speech, but the gesture is often initiated before (but not after) the coexpressive speech. The present ERP study investigated what degree of asynchrony in the speech and gesture onsets are optimal for semantic integration of the concurrent gesture and speech. Videos of a person gesturing were combined with speech segments that were either semantically congruent or incongruent with the gesture. Although gesture and speech always overlapped in time, gesture and speech were presented with three different degrees of asynchrony. In the SOA 0 condition, the gesture onset and the speech onset were simultaneous. In the SOA 160 and 360 conditions, speech was delayed by 160 and 360 msec, respectively. ERPs time locked to speech onset showed a significant difference between semantically congruent versus incongruent gesture–speech combinations on the N400 for the SOA 0 and 160 conditions. No significant difference was found for the SOA 360 condition. These results imply that speech and gesture are integrated most efficiently when the differences in onsets do not exceed a certain time span because of the fact that iconic gestures need speech to be disambiguated in a way relevant to the speech context.
  • Haghani, A., Li, C. Z., Robeck, T. R., Zhang, J., Lu, A. T., Ablaeva, J., Acosta-Rodríguez, V. A., Adams, D. M., Alagaili, A. N., Almunia, J., Aloysius, A., Amor, N. M. S., Ardehali, R., Arneson, A., Baker, C. S., Banks, G., Belov, K., Bennett, N. C., Black, P., Blumstein, D. T. and 170 moreHaghani, A., Li, C. Z., Robeck, T. R., Zhang, J., Lu, A. T., Ablaeva, J., Acosta-Rodríguez, V. A., Adams, D. M., Alagaili, A. N., Almunia, J., Aloysius, A., Amor, N. M. S., Ardehali, R., Arneson, A., Baker, C. S., Banks, G., Belov, K., Bennett, N. C., Black, P., Blumstein, D. T., Bors, E. K., Breeze, C. E., Brooke, R. T., Brown, J. L., Carter, G., Caulton, A., Cavin, J. M., Chakrabarti, L., Chatzistamou, I., Chavez, A. S., Chen, H., Cheng, K., Chiavellini, P., Choi, O.-W., Clarke, S., Cook, J. A., Cooper, L. N., Cossette, M.-L., Day, J., DeYoung, J., Dirocco, S., Dold, C., Dunnum, J. L., Ehmke, E. E., Emmons, C. K., Emmrich, S., Erbay, E., Erlacher-Reid, C., Faulkes, C. G., Fei, Z., Ferguson, S. H., Finno, C. J., Flower, J. E., Gaillard, J.-M., Garde, E., Gerber, L., Gladyshev, V. N., Goya, R. G., Grant, M. J., Green, C. B., Hanson, M. B., Hart, D. W., Haulena, M., Herrick, K., Hogan, A. N., Hogg, C. J., Hore, T. A., Huang, T., Izpisua Belmonte, J. C., Jasinska, A. J., Jones, G., Jourdain, E., Kashpur, O., Katcher, H., Katsumata, E., Kaza, V., Kiaris, H., Kobor, M. S., Kordowitzki, P., Koski, W. R., Krützen, M., Kwon, S. B., Larison, B., Lee, S.-G., Lehmann, M., Lemaître, J.-F., Levine, A. J., Li, X., Li, C., Lim, A. R., Lin, D. T. S., Lindemann, D. M., Liphardt, S. W., Little, T. J., Macoretta, N., Maddox, D., Matkin, C. O., Mattison, J. A., McClure, M., Mergl, J., Meudt, J. J., Montano, G. A., Mozhui, K., Munshi-South, J., Murphy, W. J., Naderi, A., Nagy, M., Narayan, P., Nathanielsz, P. W., Nguyen, N. B., Niehrs, C., Nyamsuren, B., O’Brien, J. K., Ginn, P. O., Odom, D. T., Ophir, A. G., Osborn, S., Ostrander, E. A., Parsons, K. M., Paul, K. C., Pedersen, A. B., Pellegrini, M., Peters, K. J., Petersen, J. L., Pietersen, D. W., Pinho, G. M., Plassais, J., Poganik, J. R., Prado, N. A., Reddy, P., Rey, B., Ritz, B. R., Robbins, J., Rodriguez, M., Russell, J., Rydkina, E., Sailer, L. L., Salmon, A. B., Sanghavi, A., Schachtschneider, K. M., Schmitt, D., Schmitt, T., Schomacher, L., Schook, L. B., Sears, K. E., Seifert, A. W., Shafer, A. B. A., Shindyapina, A. V., Simmons, M., Singh, K., Sinha, I., Slone, J., Snell, R. G., Soltanmohammadi, E., Spangler, M. L., Spriggs, M., Staggs, L., Stedman, N., Steinman, K. J., Stewart, D. T., Sugrue, V. J., Szladovits, B., Takahashi, J. S., Takasugi, M., Teeling, E. C., Thompson, M. J., Van Bonn, B., Vernes, S. C., Villar, D., Vinters, H. V., Vu, H., Wallingford, M. C., Wang, N., Wilkinson, G. S., Williams, R. W., Yan, Q., Yao, M., Young, B. G., Zhang, B., Zhang, Z., Zhao, Y., Zhao, P., Zhou, W., Zoller, J. A., Ernst, J., Seluanov, A., Gorbunova, V., Yang, X. W., Raj, K., & Horvath, S. (2023). DNA methylation networks underlying mammalian traits. Science, 381(6658): eabq5693. doi:10.1126/science.abq5693.

    Abstract

    INTRODUCTION
    Comparative epigenomics is an emerging field that combines epigenetic signatures with phylogenetic relationships to elucidate species characteristics such as maximum life span. For this study, we generated cytosine DNA methylation (DNAm) profiles (n = 15,456) from 348 mammalian species using a methylation array platform that targets highly conserved cytosines.
    RATIONALE
    Nature has evolved mammalian species of greatly differing life spans. To resolve the relationship of DNAm with maximum life span and phylogeny, we performed a large-scale cross-species unsupervised analysis. Comparative studies in many species enables the identification of epigenetic correlates of maximum life span and other traits.
    RESULTS
    We first tested whether DNAm levels in highly conserved cytosines captured phylogenetic relationships among species. We constructed phyloepigenetic trees that paralleled the traditional phylogeny. To avoid potential confounding by different tissue types, we generated tissue-specific phyloepigenetic trees. The high phyloepigenetic-phylogenetic congruence is due to differences in methylation levels and is not confounded by sequence conservation.
    We then interrogated the extent to which DNA methylation associates with specific biological traits. We used an unsupervised weighted correlation network analysis (WGCNA) to identify clusters of highly correlated CpGs (comethylation modules). WGCNA identified 55 distinct comethylation modules, of which 30 were significantly associated with traits including maximum life span, adult weight, age, sex, human mortality risk, or perturbations that modulate murine life span.
    Both the epigenome-wide association analysis (EWAS) and eigengene-based analysis identified methylation signatures of maximum life span, and most of these were independent of aging, presumably set at birth, and could be stable predictors of life span at any point in life. Several CpGs that are more highly methylated in long-lived species are located near HOXL subclass homeoboxes and other genes that play a role in morphogenesis and development. Some of these life span–related CpGs are located next to genes that are also implicated in our analysis of upstream regulators (e.g., ASCL1 and SMAD6). CpGs with methylation levels that are inversely related to life span are enriched in transcriptional start site (TSS1) and promoter flanking (PromF4, PromF5) associated chromatin states. Genes located in chromatin state TSS1 are constitutively active and enriched for nucleic acid metabolic processes. This suggests that long-living species evolved mechanisms that maintain low methylation levels in these chromatin states that would favor higher expression levels of genes essential for an organism’s survival.
    The upstream regulator analysis of the EWAS of life span identified the pluripotency transcription factors OCT4, SOX2, and NANOG. Other factors, such as POLII, CTCF, RAD21, YY1, and TAF1, showed the strongest enrichment for negatively life span–related CpGs.
    CONCLUSION
    The phyloepigenetic trees indicate that divergence of DNA methylation profiles closely parallels that of genetics through evolution. Our results demonstrate that DNA methylation is subjected to evolutionary pressures and selection. The publicly available data from our Mammalian Methylation Consortium are a rich source of information for different fields such as evolutionary biology, developmental biology, and aging.
  • Hagoort, P. (2023). The language marker hypothesis. Cognition, 230: 105252. doi:10.1016/j.cognition.2022.105252.

    Abstract

    According to the language marker hypothesis language has provided homo sapiens with a rich symbolic system that plays a central role in interpreting signals delivered by our sensory apparatus, in shaping action goals, and in creating a powerful tool for reasoning and inferencing. This view provides an important correction on embodied accounts of language that reduce language to action, perception, emotion and mental simulation. The presence of a language system has, however, also important consequences for perception, action, emotion, and memory. Language stamps signals from perception, action, and emotional systems with rich cognitive markers that transform the role of these signals in the overall cognitive architecture of the human mind. This view does not deny that language is implemented by means of universal principles of neural organization. However, language creates the possibility to generate rich internal models of the world that are shaped and made accessible by the characteristics of a language system. This makes us less dependent on direct action-perception couplings and might even sometimes go at the expense of the veridicality of perception. In cognitive (neuro)science the pendulum has swung from language as the key to understand the organization of the human mind to the perspective that it is a byproduct of perception and action. It is time that it partly swings back again.
  • Hagoort, P. (2011). The binding problem for language, and its consequences for the neurocognition of comprehension. In E. A. Gibson, & N. J. Pearlmutter (Eds.), The processing and acquisition of reference (pp. 403-436). Cambridge, MA: MIT Press.
  • Hagoort, P. (2011). The neuronal infrastructure for unification at multiple levels. In G. Gaskell, & P. Zwitserlood (Eds.), Lexical representation: A multidisciplinary approach (pp. 231-242). Berlin: De Gruyter Mouton.
  • Hagoort, P. (2023). Zij zijn ons brein en andere beschouwingen. Nijmegen: Max Planck Instituut voor Psycholinguistiek.
  • Hamans, C., & Seuren, P. A. M. (2010). Chomsky in search of a pedigree. In D. A. Kibbee (Ed.), Chomskyan (R)evolutions (pp. 377-394). Amsterdam/Philadelphia: Benjamins.

    Abstract

    This paper follows the changing fortunes of Chomsky’s search for a pedigree in the history of Western thought during the late 1960s. Having achieved a unique position of supremacy in the theory of syntax and having exploited that position far beyond the narrow circles of professional syntacticians, he felt the need to shore up his theory with the authority of history. It is shown that this attempt, resulting mainly in his Cartesian Linguistics of 1966, was widely, and rightly, judged to be a radical failure, even though it led to a sudden revival of interest in the history of linguistics. Ironically, the very upswing in historical studies caused by Cartesian Linguistics ended up showing that the real pedigree belongs to Generative Semantics, developed by the same ‘angry young men’ Chomsky was so bent on destroying.
  • Hamilton, A., & Holler, J. (Eds.). (2023). Face2face: Advancing the science of social interaction [Special Issue]. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences. Retrieved from https://royalsocietypublishing.org/toc/rstb/2023/378/1875.

    Abstract

    Face to face interaction is fundamental to human sociality but is very complex to study in a scientific fashion. This theme issue brings together cutting-edge approaches to the study of face-to-face interaction and showcases how we can make progress in this area. Researchers are now studying interaction in adult conversation, parent-child relationships, neurodiverse groups, interactions with virtual agents and various animal species. The theme issue reveals how new paradigms are leading to more ecologically grounded and comprehensive insights into what social interaction is. Scientific advances in this area can lead to improvements in education and therapy, better understanding of neurodiversity and more engaging artificial agents
  • Hamilton, A., & Holler, J. (2023). Face2face: Advancing the science of social interaction. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 378(1875): 20210470. doi:10.1098/rstb.2021.0470.

    Abstract

    Face-to-face interaction is core to human sociality and its evolution, and provides the environment in which most of human communication occurs. Research into the full complexities that define face-to-face interaction requires a multi-disciplinary, multi-level approach, illuminating from different perspectives how we and other species interact. This special issue showcases a wide range of approaches, bringing together detailed studies of naturalistic social-interactional behaviour with larger scale analyses for generalization, and investigations of socially contextualized cognitive and neural processes that underpin the behaviour we observe. We suggest that this integrative approach will allow us to propel forwards the science of face-to-face interaction by leading us to new paradigms and novel, more ecologically grounded and comprehensive insights into how we interact with one another and with artificial agents, how differences in psychological profiles might affect interaction, and how the capacity to socially interact develops and has evolved in the human and other species. This theme issue makes a first step into this direction, with the aim to break down disciplinary boundaries and emphasizing the value of illuminating the many facets of face-to-face interaction.
  • Hammarström, H. (2011). Automatic annotation of bibliographical references for descriptive language materials. In P. Forner, J. Kekäläinen, M. Lalmas, & M. De Rijke (Eds.), Multilingual and multimodal information access evaluation. Second International Conference of the Cross-Language Evaluation Forum, CLEF 2011, Amsterdam, The Netherlands, September 19-22, 2011; Proceedings (pp. 62-73). Berlin: Springer.

    Abstract

    The present paper considers the problem of annotating bibliographical references with labels/classes, given training data of references already annotated with labels. The problem is an instance of document categorization where the documents are short and written in a wide variety of languages. The skewed distributions of title words and labels calls for special carefulness when choosing a Machine Learning approach. The present paper describes how to induce Disjunctive Normal Form formulae (DNFs), which have several advantages over Decision Trees. The approach is evaluated on a large real-world collection of bibliographical references.

Share this page